==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 25-MAY-04 1WF0 . COMPND 2 MOLECULE: TAR DNA-BINDING PROTEIN-43; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6507.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 52.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 19.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 3,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 72.9 -12.9 17.9 2.1 2 2 A S + 0 0 131 1,-0.2 2,-0.2 0, 0.0 0, 0.0 0.904 360.0 0.6 -74.3 -43.5 -10.0 19.6 0.4 3 3 A S S S- 0 0 107 2,-0.0 2,-0.7 0, 0.0 -1,-0.2 -0.666 70.9-159.5-150.8 88.8 -7.9 16.4 0.1 4 4 A G - 0 0 55 -3,-0.3 2,-0.1 -2,-0.2 48,-0.1 -0.594 29.5-118.8 -74.8 113.1 -9.3 13.2 1.4 5 5 A S - 0 0 50 -2,-0.7 -1,-0.1 1,-0.2 -2,-0.0 -0.297 30.5-176.3 -53.5 117.1 -6.5 10.7 2.0 6 6 A S + 0 0 27 -2,-0.1 43,-0.8 43,-0.1 2,-0.4 -0.001 41.4 121.2-106.1 26.8 -7.2 7.8 -0.3 7 7 A G E -A 48 0A 1 41,-0.2 68,-0.5 68,-0.1 2,-0.4 -0.772 43.2-163.5 -96.6 135.6 -4.3 5.7 1.0 8 8 A V E -A 47 0A 0 39,-1.8 39,-1.8 -2,-0.4 2,-0.7 -0.906 17.3-129.6-118.6 146.0 -4.7 2.3 2.6 9 9 A F E -AB 46 73A 49 64,-2.2 2,-1.4 -2,-0.4 64,-0.6 -0.832 14.3-154.5 -97.4 112.7 -2.4 0.2 4.7 10 10 A V E - B 0 72A 0 35,-2.3 35,-0.4 -2,-0.7 62,-0.2 -0.661 24.2-178.9 -87.7 87.3 -1.9 -3.3 3.5 11 11 A G E + B 0 71A 20 -2,-1.4 60,-0.5 60,-1.3 33,-0.2 0.070 56.0 51.7 -72.9-170.6 -1.0 -5.2 6.6 12 12 A R S S+ 0 0 175 30,-0.2 -1,-0.2 58,-0.2 2,-0.2 0.869 88.0 133.3 45.6 43.0 -0.1 -8.9 7.0 13 13 A C - 0 0 11 30,-2.3 2,-0.2 -3,-0.2 -1,-0.2 -0.530 45.6-136.9-113.0-179.2 2.3 -8.4 4.1 14 14 A T - 0 0 59 -2,-0.2 28,-0.0 -3,-0.1 -1,-0.0 -0.728 20.8-118.4-130.7-179.9 5.9 -9.4 3.4 15 15 A G S S+ 0 0 61 -2,-0.2 -1,-0.1 1,-0.1 27,-0.0 0.720 100.8 75.2 -93.7 -25.1 9.1 -8.0 2.0 16 16 A D S S+ 0 0 157 2,-0.1 -1,-0.1 -3,-0.0 -3,-0.0 0.848 83.5 84.9 -54.8 -35.8 9.5 -10.5 -0.9 17 17 A M S S- 0 0 14 1,-0.1 2,-0.3 3,-0.0 -4,-0.0 -0.220 71.7-145.1 -65.9 158.5 6.7 -8.6 -2.6 18 18 A T >> - 0 0 67 1,-0.1 4,-1.6 0, 0.0 3,-0.7 -0.917 27.6-109.4-128.2 154.4 7.5 -5.5 -4.7 19 19 A E H 3> S+ 0 0 88 -2,-0.3 4,-1.8 1,-0.3 5,-0.1 0.787 121.8 55.9 -49.1 -28.8 5.6 -2.2 -5.4 20 20 A D H 3> S+ 0 0 100 2,-0.2 4,-2.2 3,-0.2 -1,-0.3 0.908 103.2 52.8 -71.7 -43.6 5.1 -3.6 -8.9 21 21 A E H <> S+ 0 0 74 -3,-0.7 4,-2.0 2,-0.2 3,-0.3 0.977 117.1 35.6 -55.6 -62.3 3.4 -6.8 -7.7 22 22 A L H X S+ 0 0 4 -4,-1.6 4,-2.8 1,-0.2 5,-0.2 0.912 114.8 57.8 -59.3 -44.5 0.8 -5.1 -5.6 23 23 A R H < S+ 0 0 98 -4,-1.8 9,-0.3 -5,-0.4 -1,-0.2 0.857 113.5 39.7 -54.7 -37.0 0.5 -2.2 -8.1 24 24 A E H < S+ 0 0 156 -4,-2.2 4,-0.3 -3,-0.3 -1,-0.3 0.757 114.0 54.1 -83.7 -27.1 -0.4 -4.8 -10.7 25 25 A F H < S+ 0 0 38 -4,-2.0 3,-0.4 -5,-0.2 -2,-0.2 0.801 113.2 42.1 -76.1 -30.2 -2.5 -6.8 -8.3 26 26 A F S X S+ 0 0 0 -4,-2.8 4,-1.5 1,-0.2 6,-0.3 0.381 97.0 79.5 -95.8 1.9 -4.6 -3.7 -7.4 27 27 A S T 4 S+ 0 0 62 -5,-0.2 -1,-0.2 -3,-0.2 -2,-0.2 0.640 85.8 60.0 -82.3 -15.8 -4.7 -2.6 -11.0 28 28 A Q T 4 S+ 0 0 136 -3,-0.4 -1,-0.2 -4,-0.3 -2,-0.1 0.748 107.8 44.1 -82.2 -25.9 -7.5 -5.1 -11.8 29 29 A Y T 4 S- 0 0 102 -4,-0.2 -2,-0.2 -3,-0.1 2,-0.2 0.908 130.7 -42.2 -83.9 -48.1 -9.8 -3.5 -9.2 30 30 A G S < S- 0 0 14 -4,-1.5 2,-0.5 24,-0.0 -1,-0.0 -0.495 81.4 -52.4-150.3-139.5 -9.2 0.1 -10.0 31 31 A D - 0 0 120 -2,-0.2 19,-2.5 20,-0.1 2,-1.4 -0.746 42.8-160.7-121.7 83.2 -6.5 2.6 -10.9 32 32 A V - 0 0 10 -2,-0.5 17,-0.3 -9,-0.3 3,-0.1 -0.463 6.2-156.6 -65.8 93.2 -3.7 2.4 -8.3 33 33 A M - 0 0 131 -2,-1.4 2,-0.3 1,-0.1 -1,-0.2 0.860 65.4 -41.0 -36.0 -51.4 -2.0 5.8 -8.9 34 34 A D E -C 48 0A 86 14,-1.4 14,-2.2 -3,-0.1 2,-0.4 -0.975 51.6-120.0-169.6 173.2 1.1 4.3 -7.3 35 35 A V E +C 47 0A 2 -2,-0.3 2,-0.3 12,-0.2 12,-0.2 -0.970 26.8 179.3-135.1 119.5 2.5 2.1 -4.6 36 36 A F E -C 46 0A 119 10,-2.1 10,-1.5 -2,-0.4 -2,-0.0 -0.816 20.8-142.7-117.3 157.8 5.0 3.3 -1.9 37 37 A I - 0 0 40 -2,-0.3 4,-0.1 8,-0.2 8,-0.1 -0.853 18.3-156.3-124.8 96.3 6.7 1.5 1.0 38 38 A P - 0 0 27 0, 0.0 6,-0.1 0, 0.0 -2,-0.0 -0.357 29.3 -87.9 -69.8 147.8 7.1 3.7 4.1 39 39 A K S S+ 0 0 170 1,-0.2 2,-0.1 2,-0.1 6,-0.0 -0.857 106.1 41.9-117.8 152.6 9.8 2.8 6.7 40 40 A P S S- 0 0 117 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 0.371 88.1-151.9 -69.8 135.2 10.2 1.3 9.0 41 41 A F - 0 0 54 -4,-0.1 2,-0.4 -2,-0.1 -2,-0.1 -0.659 17.6-180.0 -81.2 123.8 8.3 -1.3 7.1 42 42 A R - 0 0 209 -2,-0.5 -30,-0.2 2,-0.3 -29,-0.1 -0.726 69.9 -61.6-126.9 82.1 6.4 -3.8 9.3 43 43 A A S S+ 0 0 40 -2,-0.4 -30,-2.3 1,-0.2 2,-0.3 0.815 117.3 95.6 47.6 33.1 4.5 -6.3 7.2 44 44 A F - 0 0 53 -33,-0.2 2,-0.3 -32,-0.2 -2,-0.3 -0.996 51.6-171.2-151.5 149.4 2.6 -3.3 5.8 45 45 A A - 0 0 2 -35,-0.4 -35,-2.3 -2,-0.3 2,-0.5 -0.957 23.6-119.1-140.7 158.4 2.7 -0.9 2.8 46 46 A F E -AC 9 36A 47 -10,-1.5 -10,-2.1 -2,-0.3 2,-0.4 -0.872 28.2-174.5-103.6 126.6 1.1 2.3 1.7 47 47 A V E -AC 8 35A 0 -39,-1.8 -39,-1.8 -2,-0.5 2,-0.4 -0.970 9.7-153.4-123.5 134.5 -1.0 2.3 -1.6 48 48 A T E -AC 7 34A 44 -14,-2.2 -14,-1.4 -2,-0.4 2,-0.3 -0.876 8.2-157.7-108.7 137.1 -2.5 5.3 -3.3 49 49 A F - 0 0 5 -43,-0.8 -17,-0.2 -2,-0.4 -43,-0.1 -0.846 26.0-128.7-113.4 149.6 -5.6 5.1 -5.6 50 50 A A S S+ 0 0 49 -19,-2.5 2,-0.3 -2,-0.3 -18,-0.1 0.464 100.8 36.8 -72.2 0.4 -6.7 7.5 -8.3 51 51 A D >> - 0 0 88 -45,-0.2 4,-1.2 -20,-0.1 3,-1.2 -0.932 66.4-147.6-156.6 128.6 -10.1 7.4 -6.5 52 52 A D H 3> S+ 0 0 62 -2,-0.3 4,-2.2 1,-0.3 5,-0.3 0.785 99.0 70.1 -64.7 -27.1 -11.1 7.3 -2.9 53 53 A Q H 3> S+ 0 0 153 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.809 102.8 43.6 -60.3 -29.9 -14.2 5.3 -3.9 54 54 A I H <> S+ 0 0 44 -3,-1.2 4,-0.9 2,-0.2 -1,-0.2 0.807 112.2 51.4 -84.6 -32.9 -11.9 2.4 -4.7 55 55 A A H < S+ 0 0 1 -4,-1.2 4,-0.4 2,-0.2 -2,-0.2 0.769 114.8 44.2 -74.4 -26.6 -9.8 2.8 -1.6 56 56 A Q H >< S+ 0 0 111 -4,-2.2 3,-1.3 2,-0.2 -2,-0.2 0.915 105.7 57.4 -83.0 -48.7 -12.9 2.8 0.6 57 57 A S H 3< S+ 0 0 85 -4,-1.5 -2,-0.2 1,-0.3 -1,-0.1 0.802 109.4 49.4 -52.3 -30.0 -14.8 -0.1 -1.1 58 58 A L T >< S+ 0 0 8 -4,-0.9 3,-3.1 2,-0.1 2,-0.5 0.733 83.5 109.3 -81.7 -24.1 -11.7 -2.2 -0.3 59 59 A C T < S+ 0 0 42 -3,-1.3 14,-0.2 -4,-0.4 3,-0.1 -0.373 91.6 13.9 -57.7 107.7 -11.7 -1.1 3.3 60 60 A G T 3 S+ 0 0 61 12,-2.3 2,-0.3 -2,-0.5 -1,-0.3 0.337 100.5 121.3 106.6 -5.1 -12.8 -4.2 5.2 61 61 A E < - 0 0 95 -3,-3.1 11,-1.2 11,-0.2 2,-0.6 -0.717 56.2-138.2 -94.7 142.7 -12.3 -6.6 2.4 62 62 A D E -D 71 0A 126 -2,-0.3 2,-0.4 9,-0.1 9,-0.2 -0.883 23.5-176.7-104.2 114.8 -10.0 -9.6 2.6 63 63 A L E -D 70 0A 15 7,-1.2 7,-2.5 -2,-0.6 2,-0.5 -0.862 17.7-138.7-112.1 145.6 -7.9 -10.2 -0.5 64 64 A I E -D 69 0A 93 -2,-0.4 2,-0.5 5,-0.2 5,-0.2 -0.893 17.7-175.5-106.7 126.9 -5.4 -13.1 -1.1 65 65 A I E > S-D 68 0A 8 3,-1.7 3,-1.7 -2,-0.5 -43,-0.0 -0.956 74.3 -20.1-125.6 114.5 -2.1 -12.4 -2.8 66 66 A K T 3 S- 0 0 147 -2,-0.5 3,-0.1 1,-0.3 -1,-0.1 0.574 128.6 -54.2 68.5 7.8 0.3 -15.3 -3.7 67 67 A G T 3 S+ 0 0 63 1,-0.5 -1,-0.3 0, 0.0 2,-0.1 0.088 114.6 113.2 113.4 -22.2 -1.6 -17.3 -1.1 68 68 A I E < - D 0 65A 48 -3,-1.7 -3,-1.7 1,-0.0 2,-0.6 -0.354 66.6-120.5 -80.1 163.0 -1.2 -14.8 1.8 69 69 A S E - D 0 64A 52 -5,-0.2 2,-0.3 -57,-0.1 -5,-0.2 -0.916 28.2-169.4-110.9 113.5 -4.1 -12.9 3.4 70 70 A V E - D 0 63A 2 -7,-2.5 -7,-1.2 -2,-0.6 2,-0.5 -0.769 13.4-140.3-102.5 146.5 -3.8 -9.1 3.3 71 71 A H E -BD 11 62A 88 -60,-0.5 -60,-1.3 -2,-0.3 2,-0.6 -0.921 10.0-149.9-109.9 121.6 -6.1 -6.7 5.2 72 72 A I E +B 10 0A 0 -11,-1.2 -12,-2.3 -2,-0.5 2,-0.3 -0.796 30.1 155.5 -93.3 120.2 -7.2 -3.5 3.5 73 73 A S E -B 9 0A 48 -64,-0.6 -64,-2.2 -2,-0.6 2,-0.6 -0.976 38.0-130.5-142.7 154.8 -7.8 -0.6 5.9 74 74 A N + 0 0 49 -2,-0.3 2,-0.3 -66,-0.2 -66,-0.2 -0.916 38.0 156.0-111.9 111.4 -7.8 3.2 5.7 75 75 A A - 0 0 45 -2,-0.6 -68,-0.1 -68,-0.5 -2,-0.1 -0.967 26.2-163.6-134.7 150.2 -5.8 5.1 8.3 76 76 A E - 0 0 118 -2,-0.3 2,-0.1 -68,-0.0 -2,-0.0 -0.786 14.3-157.8-137.6 92.0 -4.1 8.5 8.6 77 77 A P - 0 0 105 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.403 18.1-124.3 -69.7 142.3 -1.5 8.9 11.4 78 78 A K + 0 0 186 -2,-0.1 2,-0.3 2,-0.0 -2,-0.0 -0.565 40.0 150.8 -87.7 152.0 -0.7 12.4 12.6 79 79 A H - 0 0 172 -2,-0.2 2,-0.4 2,-0.0 0, 0.0 -0.909 25.5-158.7-176.2 148.3 2.8 13.8 12.6 80 80 A N + 0 0 151 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.961 36.9 109.0-142.4 121.3 4.7 17.1 12.4 81 81 A S - 0 0 119 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.976 39.4-144.3-174.5 171.7 8.3 17.7 11.4 82 82 A N - 0 0 141 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.860 25.3-120.0-158.0 117.8 10.7 18.9 8.8 83 83 A S S S+ 0 0 133 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.275 71.7 94.9 -57.7 137.5 14.1 17.6 7.7 84 84 A G + 0 0 57 4,-0.0 3,-0.1 3,-0.0 -1,-0.1 0.447 28.9 166.5 138.5 67.9 16.9 20.1 8.2 85 85 A P S S+ 0 0 130 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 0.886 76.1 17.2 -69.8 -40.8 18.9 20.0 11.4 86 86 A S S S- 0 0 91 0, 0.0 2,-1.3 0, 0.0 0, 0.0 -0.963 79.9-113.2-135.3 151.9 21.7 22.2 10.1 87 87 A S 0 0 141 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 -0.673 360.0 360.0 -86.5 91.0 22.1 24.7 7.3 88 88 A G 0 0 116 -2,-1.3 -1,-0.2 0, 0.0 -4,-0.0 0.453 360.0 360.0 142.9 360.0 24.7 23.0 5.1