==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-MAY-04 1WF9 . COMPND 2 MOLECULE: NPL4 FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR X.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7200.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 10.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 94.4 -3.7 19.9 9.1 2 2 A S - 0 0 109 3,-0.2 2,-0.4 2,-0.0 5,-0.1 -0.950 360.0-142.0-124.8 143.8 -7.5 20.2 8.9 3 3 A S S S+ 0 0 127 -2,-0.4 2,-0.9 1,-0.1 3,-0.1 -0.874 78.3 10.0-107.4 136.6 -10.0 21.0 11.7 4 4 A G S S+ 0 0 77 -2,-0.4 2,-0.1 1,-0.2 -1,-0.1 -0.610 101.6 90.3 102.7 -70.6 -13.4 19.3 11.9 5 5 A S - 0 0 107 -2,-0.9 2,-0.6 1,-0.1 -1,-0.2 -0.388 69.8-142.6 -63.5 134.1 -13.0 16.5 9.4 6 6 A S - 0 0 108 -2,-0.1 2,-0.1 -3,-0.1 -1,-0.1 -0.901 11.7-145.7-105.5 122.4 -11.6 13.4 10.9 7 7 A G - 0 0 47 -2,-0.6 2,-0.4 -5,-0.1 17,-0.2 -0.375 11.7-126.1 -81.6 162.4 -9.1 11.4 8.8 8 8 A T E -A 23 0A 28 15,-1.6 15,-3.3 -2,-0.1 2,-0.4 -0.929 22.2-170.9-114.8 135.1 -8.9 7.6 8.8 9 9 A M E -A 22 0A 38 -2,-0.4 77,-0.4 13,-0.3 2,-0.3 -0.979 0.4-168.7-127.8 138.1 -5.7 5.6 9.4 10 10 A L E -A 21 0A 7 11,-2.6 11,-1.6 -2,-0.4 2,-0.7 -0.872 21.8-126.2-123.1 156.2 -5.0 1.9 9.0 11 11 A R E -Ab 20 88A 136 76,-1.6 78,-2.3 -2,-0.3 2,-0.3 -0.892 28.2-171.0-107.2 106.8 -2.1 -0.2 10.1 12 12 A V E -Ab 19 89A 5 7,-2.8 7,-3.0 -2,-0.7 2,-0.5 -0.710 11.2-145.3 -97.0 147.8 -0.6 -2.2 7.2 13 13 A R E +Ab 18 90A 108 76,-2.1 78,-2.2 -2,-0.3 5,-0.2 -0.963 22.5 172.3-118.0 123.9 2.0 -5.0 7.7 14 14 A S - 0 0 6 3,-1.3 78,-0.1 -2,-0.5 43,-0.1 -0.702 46.6-107.6-121.7 173.8 4.7 -5.6 5.1 15 15 A R S S+ 0 0 203 -2,-0.2 3,-0.1 1,-0.2 77,-0.1 0.772 122.2 51.7 -71.3 -27.1 7.8 -7.7 4.9 16 16 A D S S- 0 0 107 1,-0.3 2,-0.2 0, 0.0 -1,-0.2 0.781 130.5 -68.5 -78.2 -29.2 9.9 -4.6 5.3 17 17 A G - 0 0 31 2,-0.0 -3,-1.3 0, 0.0 2,-0.4 -0.834 64.2 -51.9 155.4 169.2 8.0 -3.6 8.4 18 18 A L E -A 13 0A 73 -2,-0.2 -5,-0.3 -5,-0.2 2,-0.3 -0.559 59.2-179.0 -72.4 125.0 4.6 -2.5 9.7 19 19 A E E -A 12 0A 64 -7,-3.0 -7,-2.8 -2,-0.4 2,-0.3 -0.765 16.7-140.2-122.0 167.9 3.4 0.6 7.8 20 20 A R E -A 11 0A 162 -9,-0.3 2,-0.3 -2,-0.3 -9,-0.2 -0.960 11.4-168.0-131.4 148.4 0.4 2.9 8.0 21 21 A V E -A 10 0A 1 -11,-1.6 -11,-2.6 -2,-0.3 2,-0.4 -0.973 20.8-123.8-136.0 149.2 -1.7 4.5 5.3 22 22 A S E +A 9 0A 61 -2,-0.3 -13,-0.3 -13,-0.2 2,-0.2 -0.791 35.0 169.7 -96.1 133.5 -4.4 7.2 5.4 23 23 A V E -A 8 0A 6 -15,-3.3 -15,-1.6 -2,-0.4 10,-0.0 -0.596 36.4-130.5-127.1-172.0 -7.8 6.5 4.0 24 24 A D - 0 0 87 1,-0.4 -1,-0.1 -2,-0.2 -15,-0.1 0.767 61.3 -84.0-109.1 -50.8 -11.2 8.1 3.9 25 25 A G > - 0 0 6 -17,-0.1 3,-0.9 4,-0.1 -1,-0.4 -0.970 56.4 -52.1 170.6-161.5 -13.6 5.3 5.0 26 26 A P T 3 S+ 0 0 68 0, 0.0 53,-0.5 0, 0.0 52,-0.3 0.739 116.3 78.2 -74.9 -24.6 -15.5 2.3 3.7 27 27 A H T 3 S+ 0 0 128 50,-0.1 2,-0.2 51,-0.1 0, 0.0 0.694 84.4 84.3 -56.6 -17.8 -17.1 4.4 1.0 28 28 A I S < S- 0 0 3 -3,-0.9 50,-1.2 4,-0.0 51,-0.3 -0.576 74.8-140.8 -87.8 151.4 -13.7 3.9 -0.7 29 29 A T B >> -D 77 0B 17 -2,-0.2 4,-2.4 48,-0.2 3,-1.1 -0.643 32.1 -97.5-108.5 166.9 -13.0 0.8 -2.7 30 30 A V H 3> S+ 0 0 0 46,-3.3 4,-2.9 43,-0.4 5,-0.4 0.848 125.4 61.3 -48.4 -37.7 -9.8 -1.3 -3.0 31 31 A S H 3> S+ 0 0 45 43,-1.7 4,-1.5 45,-0.3 -1,-0.3 0.903 108.5 40.8 -56.3 -44.5 -9.2 0.7 -6.1 32 32 A Q H <> S+ 0 0 97 -3,-1.1 4,-1.8 42,-0.3 -1,-0.2 0.822 115.7 53.4 -72.9 -33.0 -9.0 3.8 -4.0 33 33 A L H >X S+ 0 0 10 -4,-2.4 4,-2.2 2,-0.2 3,-1.1 0.999 108.9 44.1 -63.7 -69.4 -7.1 2.0 -1.3 34 34 A K H 3X S+ 0 0 18 -4,-2.9 4,-2.4 1,-0.3 9,-0.2 0.872 112.6 56.2 -41.7 -46.5 -4.3 0.6 -3.4 35 35 A T H 3X S+ 0 0 60 -4,-1.5 4,-1.8 -5,-0.4 -1,-0.3 0.898 106.1 50.0 -53.9 -44.7 -4.1 4.0 -5.0 36 36 A L H > - 0 0 12 0, 0.0 4,-3.8 0, 0.0 3,-1.4 -0.466 12.0-136.1 -75.1 144.4 2.1 -0.1 -8.0 45 45 A I T 34 S+ 0 0 54 1,-0.3 -11,-0.1 2,-0.2 -10,-0.0 0.808 107.4 63.4 -67.4 -30.3 -1.4 -1.5 -7.9 46 46 A H T 34 S+ 0 0 159 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.548 117.6 29.5 -70.4 -6.6 -0.4 -4.2 -10.3 47 47 A N T <4 S+ 0 0 19 -3,-1.4 -2,-0.2 46,-0.1 -1,-0.2 0.666 94.4 105.0-118.0 -41.2 2.0 -5.2 -7.5 48 48 A Q < - 0 0 6 -4,-3.8 2,-0.4 45,-0.1 45,-0.2 -0.133 50.8-166.4 -46.4 135.4 0.1 -4.2 -4.4 49 49 A T - 0 0 25 43,-0.5 2,-0.3 2,-0.1 43,-0.2 -0.884 1.6-163.6-135.2 101.9 -1.4 -7.2 -2.7 50 50 A L + 0 0 4 21,-0.4 21,-0.6 -2,-0.4 20,-0.4 -0.627 18.4 161.1 -85.6 142.3 -4.0 -6.6 0.1 51 51 A S B -C 90 0A 2 39,-1.0 39,-1.8 -2,-0.3 5,-0.1 -0.922 41.1-144.9-163.4 134.9 -4.8 -9.5 2.4 52 52 A T S S+ 0 0 60 -2,-0.3 2,-0.4 37,-0.2 36,-0.1 -0.053 82.3 82.1 -90.7 31.4 -6.4 -9.7 5.8 53 53 A N S > S- 0 0 68 37,-0.2 3,-1.5 1,-0.1 4,-0.2 -1.000 72.9-142.2-139.5 137.8 -4.1 -12.6 6.7 54 54 A R G > S+ 0 0 164 -2,-0.4 3,-1.6 1,-0.3 4,-0.2 0.589 94.7 84.3 -71.5 -10.3 -0.5 -12.6 8.0 55 55 A N G >> S+ 0 0 72 1,-0.3 4,-1.2 2,-0.2 3,-1.2 0.633 73.7 74.9 -66.1 -12.9 0.0 -15.6 5.7 56 56 A L G <4 S+ 0 0 1 -3,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.821 85.8 60.1 -67.8 -31.8 0.6 -13.0 3.0 57 57 A L G <4 S+ 0 0 55 -3,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.537 102.7 55.9 -72.3 -5.9 4.0 -12.3 4.5 58 58 A L T <4 S+ 0 0 110 -3,-1.2 -2,-0.2 -4,-0.2 -1,-0.2 0.839 81.1 96.8 -91.5 -42.2 4.6 -16.0 3.8 59 59 A A < + 0 0 7 -4,-1.2 -3,-0.0 1,-0.2 0, 0.0 -0.294 40.0 165.3 -52.8 121.5 3.9 -15.8 0.1 60 60 A K + 0 0 182 -2,-0.0 -1,-0.2 0, 0.0 -4,-0.0 0.646 58.2 58.5-110.6 -28.9 7.2 -15.5 -1.7 61 61 A S S > S- 0 0 73 1,-0.1 4,-1.1 33,-0.0 5,-0.0 -0.413 86.9-114.4 -96.9 175.0 6.1 -16.3 -5.2 62 62 A P H > S+ 0 0 82 0, 0.0 4,-1.4 0, 0.0 3,-0.2 0.913 114.9 52.6 -75.0 -46.0 3.4 -14.7 -7.4 63 63 A S H 4 S+ 0 0 88 1,-0.2 4,-0.3 2,-0.2 3,-0.2 0.871 104.3 58.9 -56.6 -39.4 1.1 -17.7 -7.5 64 64 A D H >4 S+ 0 0 74 1,-0.3 3,-2.1 2,-0.2 4,-0.3 0.927 104.4 49.2 -55.4 -48.6 1.2 -17.7 -3.7 65 65 A F H >< S+ 0 0 35 -4,-1.1 3,-1.6 1,-0.3 -1,-0.3 0.788 98.9 67.5 -61.5 -28.7 -0.1 -14.2 -3.6 66 66 A L T 3< S+ 0 0 121 -4,-1.4 -1,-0.3 1,-0.3 -2,-0.2 0.610 85.9 72.8 -66.8 -11.1 -2.8 -15.4 -6.0 67 67 A A T < S+ 0 0 71 -3,-2.1 2,-0.9 -4,-0.3 -1,-0.3 0.803 86.8 68.2 -72.1 -30.5 -4.0 -17.4 -3.1 68 68 A F < + 0 0 33 -3,-1.6 -1,-0.2 -4,-0.3 3,-0.1 -0.803 53.7 151.5 -96.2 100.1 -5.3 -14.2 -1.5 69 69 A T + 0 0 104 -2,-0.9 -1,-0.1 1,-0.1 4,-0.1 -0.406 39.3 101.6-124.3 53.9 -8.2 -12.9 -3.5 70 70 A D S S+ 0 0 47 -20,-0.4 -1,-0.1 1,-0.1 -19,-0.1 0.735 94.3 26.2-102.9 -35.1 -10.2 -11.1 -0.8 71 71 A M S S+ 0 0 3 -21,-0.6 -21,-0.4 -3,-0.1 -1,-0.1 -0.286 91.6 101.4-124.1 45.5 -9.1 -7.6 -1.8 72 72 A A + 0 0 55 -23,-0.1 -1,-0.1 -3,-0.0 -2,-0.1 0.786 57.1 90.7 -95.1 -36.8 -8.3 -8.0 -5.4 73 73 A D > - 0 0 84 1,-0.2 3,-0.7 -3,-0.1 -43,-0.4 -0.470 63.6-156.4 -65.6 124.2 -11.5 -6.5 -6.8 74 74 A P T 3 S+ 0 0 65 0, 0.0 -43,-1.7 0, 0.0 -42,-0.3 0.648 96.8 54.3 -75.0 -16.2 -11.0 -2.8 -7.3 75 75 A N T 3 S+ 0 0 117 -45,-0.1 2,-0.2 -46,-0.1 -2,-0.1 0.492 88.3 105.5 -92.8 -7.1 -14.8 -2.4 -7.0 76 76 A L < - 0 0 34 -3,-0.7 -46,-3.3 -47,-0.1 2,-0.3 -0.494 67.1-134.6 -75.7 143.6 -14.7 -4.1 -3.7 77 77 A R B > -D 29 0B 133 -48,-0.3 3,-2.3 -2,-0.2 -48,-0.2 -0.752 14.2-127.5-101.4 147.6 -15.2 -2.0 -0.6 78 78 A I G >> S+ 0 0 2 -50,-1.2 3,-2.5 -52,-0.3 4,-1.9 0.753 104.8 79.8 -60.8 -24.1 -13.1 -2.3 2.5 79 79 A S G 34 S+ 0 0 58 -53,-0.5 -1,-0.3 -51,-0.3 -52,-0.1 0.718 75.2 76.3 -55.6 -20.6 -16.4 -2.6 4.3 80 80 A S G <4 S+ 0 0 79 -3,-2.3 -1,-0.3 1,-0.2 -2,-0.2 0.839 111.9 22.7 -59.3 -34.5 -16.2 -6.2 3.2 81 81 A L T <4 S- 0 0 46 -3,-2.5 -2,-0.2 -4,-0.2 -1,-0.2 0.568 110.6-124.5-105.3 -17.5 -13.7 -6.8 5.9 82 82 A N < - 0 0 124 -4,-1.9 2,-0.6 1,-0.2 -3,-0.2 0.997 31.7-167.2 68.5 75.0 -14.8 -3.8 8.0 83 83 A L - 0 0 24 -5,-0.3 2,-0.2 4,-0.1 -1,-0.2 -0.866 8.9-180.0 -99.8 118.1 -11.6 -1.9 8.5 84 84 A A > - 0 0 60 -2,-0.6 2,-2.0 -59,-0.0 3,-1.9 -0.628 49.6 -68.3-110.8 170.7 -11.8 0.8 11.1 85 85 A H T 3 S+ 0 0 116 1,-0.3 -75,-0.2 -2,-0.2 -1,-0.0 -0.378 131.9 25.5 -60.7 84.6 -9.3 3.3 12.4 86 86 A G T 3 S+ 0 0 48 -2,-2.0 -1,-0.3 -77,-0.4 -76,-0.1 -0.049 86.8 129.0 150.5 -34.9 -7.1 0.7 14.0 87 87 A S < - 0 0 34 -3,-1.9 -76,-1.6 -78,-0.1 2,-0.3 0.117 53.9-122.1 -41.6 163.3 -7.8 -2.5 12.1 88 88 A M E +b 11 0A 71 -78,-0.1 2,-0.3 -36,-0.1 -76,-0.2 -0.864 30.4 173.7-117.4 151.3 -4.8 -4.3 10.8 89 89 A V E -b 12 0A 6 -78,-2.3 -76,-2.1 -2,-0.3 2,-0.5 -0.956 23.8-129.8-149.4 163.7 -3.8 -5.4 7.3 90 90 A Y E -bC 13 51A 34 -39,-1.8 -39,-1.0 -2,-0.3 2,-0.3 -0.982 17.6-158.2-125.2 124.9 -0.9 -6.9 5.4 91 91 A L - 0 0 2 -78,-2.2 2,-0.3 -2,-0.5 -76,-0.2 -0.662 9.6-178.3 -98.5 155.2 0.6 -5.5 2.2 92 92 A A + 0 0 9 -2,-0.3 -43,-0.5 -43,-0.2 2,-0.3 -0.884 5.5 169.1-157.5 120.3 2.6 -7.4 -0.4 93 93 A Y - 0 0 30 -2,-0.3 2,-0.3 -45,-0.2 -45,-0.1 -0.930 28.5-120.7-133.1 156.4 4.3 -6.2 -3.5 94 94 A E S S- 0 0 114 -2,-0.3 2,-0.5 -50,-0.1 -46,-0.1 -0.713 76.9 -12.2 -97.7 147.8 6.7 -7.5 -6.0 95 95 A G S S- 0 0 77 -2,-0.3 2,-0.2 -48,-0.0 -2,-0.1 -0.548 107.2 -51.3 71.0-119.6 10.1 -6.0 -6.8 96 96 A E - 0 0 135 -2,-0.5 -2,-0.1 1,-0.2 2,-0.0 -0.780 55.0 -88.7-141.8-176.0 10.3 -2.6 -5.2 97 97 A R - 0 0 108 -2,-0.2 -54,-0.2 1,-0.1 -1,-0.2 0.042 39.6-116.5 -84.1-163.7 8.5 0.7 -5.0 98 98 A T - 0 0 68 -56,-1.5 2,-0.4 -57,-0.3 -1,-0.1 -0.462 33.6 -76.2-122.9-165.3 8.8 3.8 -7.2 99 99 A I - 0 0 152 -2,-0.2 2,-0.1 1,-0.0 -57,-0.0 -0.856 41.3-139.6-103.7 134.8 9.9 7.4 -7.0 100 100 A R + 0 0 192 -2,-0.4 2,-0.2 -60,-0.0 -60,-0.1 -0.271 27.1 161.0 -83.9 173.8 7.7 10.0 -5.3 101 101 A G + 0 0 68 -2,-0.1 2,-0.3 0, 0.0 -2,-0.0 -0.715 7.1 163.8 169.1 139.5 7.1 13.5 -6.5 102 102 A S - 0 0 123 -2,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.891 11.7-172.2-169.3 136.8 4.6 16.4 -6.0 103 103 A G - 0 0 66 -2,-0.3 2,-0.4 2,-0.1 0, 0.0 -0.814 13.8-156.0-140.0 96.0 4.5 20.1 -6.7 104 104 A P + 0 0 128 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.589 22.2 169.7 -74.9 123.4 1.5 22.1 -5.3 105 105 A S - 0 0 119 -2,-0.4 2,-0.7 2,-0.0 -2,-0.1 -1.000 30.6-136.1-139.2 134.6 1.0 25.3 -7.3 106 106 A S 0 0 133 -2,-0.4 0, 0.0 0, 0.0 0, 0.0 -0.813 360.0 360.0 -93.6 113.1 -1.9 27.7 -7.3 107 107 A G 0 0 128 -2,-0.7 -2,-0.0 0, 0.0 0, 0.0 -0.914 360.0 360.0-109.7 360.0 -2.9 28.7 -10.8