==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 26-MAY-04 1WFQ . COMPND 2 MOLECULE: UNR PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.K.GORONCY,T.KIGAWA,S.KOSHIBA,T.TOMIZAWA,N.KOBAYASHI,N.TOCH . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6634.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 57.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 29.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 129 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-106.9 13.4 -8.5 31.2 2 2 A S - 0 0 131 2,-0.1 2,-0.2 0, 0.0 0, 0.0 -0.947 360.0-113.8-158.6 175.3 13.9 -5.2 29.5 3 3 A S + 0 0 127 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.671 43.1 117.7-115.3 171.0 12.2 -2.3 27.7 4 4 A G - 0 0 68 -2,-0.2 2,-0.5 2,-0.0 -2,-0.1 -0.671 54.6-108.9 146.8 158.5 12.2 -0.9 24.2 5 5 A S S S- 0 0 105 2,-0.2 -2,-0.0 -2,-0.2 -1,-0.0 -0.740 81.2 -61.5-119.1 82.4 10.1 -0.2 21.1 6 6 A S S > S- 0 0 92 -2,-0.5 3,-0.6 2,-0.1 -2,-0.0 0.873 79.1-105.8 45.3 43.7 11.1 -2.6 18.4 7 7 A G T 3 S- 0 0 79 1,-0.2 -2,-0.2 4,-0.0 2,-0.1 -0.160 70.1 -44.7 44.4-114.5 14.6 -1.1 18.6 8 8 A G T 3 S- 0 0 62 2,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.573 80.9-100.7-152.8 83.8 14.9 1.0 15.4 9 9 A Y S < S+ 0 0 185 -3,-0.6 2,-0.1 -2,-0.1 6,-0.1 0.126 93.5 76.3 -38.3 156.8 13.7 -0.4 12.1 10 10 A P S S- 0 0 84 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 0.497 76.4-168.7 -69.8 150.3 14.5 -1.6 9.8 11 11 A N + 0 0 121 3,-0.2 -2,-0.0 -2,-0.1 -4,-0.0 -0.696 41.8 18.1-107.0 160.6 15.0 -4.8 11.8 12 12 A G S S- 0 0 63 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 0.318 100.3 -69.7 63.3 159.0 16.7 -8.1 10.8 13 13 A T S S+ 0 0 152 1,-0.1 2,-0.6 2,-0.0 -1,-0.1 0.928 122.8 67.0 -46.0 -56.8 19.2 -8.5 8.0 14 14 A S S S- 0 0 107 1,-0.0 -3,-0.2 2,-0.0 -1,-0.1 -0.585 80.6-156.0 -73.5 112.9 16.5 -8.0 5.4 15 15 A A - 0 0 67 -2,-0.6 2,-0.6 -5,-0.1 -2,-0.0 -0.167 20.9 -98.8 -80.2 178.3 15.3 -4.4 5.6 16 16 A A - 0 0 73 49,-0.0 2,-0.5 2,-0.0 -1,-0.1 -0.901 31.1-160.5-106.7 121.3 11.9 -3.1 4.5 17 17 A L - 0 0 108 -2,-0.6 49,-0.6 49,-0.2 2,-0.4 -0.881 7.8-148.3-104.1 123.7 11.7 -1.4 1.1 18 18 A R E -A 65 0A 79 -2,-0.5 2,-0.3 47,-0.2 47,-0.2 -0.751 11.6-154.1 -92.7 133.3 8.7 0.9 0.4 19 19 A E E -A 64 0A 29 45,-2.8 45,-3.0 -2,-0.4 2,-0.4 -0.743 2.1-153.2-106.1 154.1 7.3 1.2 -3.1 20 20 A T E +A 63 0A 43 -2,-0.3 16,-0.6 43,-0.2 43,-0.2 -0.983 31.1 126.6-129.6 138.6 5.5 4.1 -4.7 21 21 A G E -B 35 0A 0 41,-1.5 41,-0.4 -2,-0.4 2,-0.3 -0.291 49.7 -75.8-149.0-124.6 3.0 4.1 -7.6 22 22 A V E -B 34 0A 36 12,-0.6 12,-2.5 39,-0.2 2,-1.4 -0.989 35.5-101.7-158.0 151.3 -0.5 5.4 -8.2 23 23 A I E +B 33 0A 1 37,-1.4 36,-0.9 -2,-0.3 10,-0.3 -0.614 40.8 169.5 -78.8 93.2 -4.2 4.5 -7.4 24 24 A E E + 0 0 89 -2,-1.4 2,-0.3 8,-0.7 -1,-0.2 0.936 68.4 8.9 -69.2 -48.2 -5.3 2.9 -10.7 25 25 A K E -B 32 0A 100 7,-1.7 7,-2.3 -3,-0.2 2,-0.3 -0.964 64.5-170.6-135.6 152.1 -8.6 1.6 -9.2 26 26 A L E +B 31 0A 36 -2,-0.3 5,-0.3 5,-0.3 2,-0.2 -0.998 6.9 174.5-145.5 138.8 -10.5 2.1 -6.0 27 27 A L - 0 0 71 3,-2.4 -2,-0.0 -2,-0.3 19,-0.0 -0.711 46.5 -99.0-131.5-177.4 -13.6 0.5 -4.4 28 28 A T S S+ 0 0 150 -2,-0.2 3,-0.1 1,-0.1 25,-0.1 0.755 124.5 35.3 -76.5 -25.4 -15.6 0.5 -1.2 29 29 A S S S- 0 0 68 1,-0.3 17,-1.1 16,-0.0 2,-0.3 0.824 133.4 -35.7 -94.8 -40.6 -13.9 -2.6 0.0 30 30 A Y E - C 0 45A 79 15,-0.2 -3,-2.4 16,-0.1 -1,-0.3 -0.934 54.4-131.3-165.5-175.0 -10.4 -2.0 -1.4 31 31 A G E -BC 26 44A 0 13,-2.7 13,-2.0 -5,-0.3 2,-0.4 -0.962 15.0-118.0-150.2 166.1 -8.4 -0.5 -4.3 32 32 A F E -BC 25 43A 54 -7,-2.3 -7,-1.7 -2,-0.3 -8,-0.7 -0.867 17.1-153.3-111.4 143.5 -5.6 -1.3 -6.7 33 33 A I E -BC 23 42A 0 9,-1.3 9,-3.2 -2,-0.4 2,-1.0 -0.956 12.5-139.8-120.1 117.8 -2.3 0.6 -7.0 34 34 A Q E -BC 22 41A 55 -12,-2.5 -12,-0.6 -2,-0.5 2,-0.3 -0.629 23.6-133.6 -77.4 103.0 -0.4 0.7 -10.3 35 35 A C E >> -BC 21 40A 1 5,-2.9 4,-1.1 -2,-1.0 5,-0.5 -0.398 14.4-163.5 -60.1 117.4 3.2 0.4 -9.4 36 36 A S T 45S+ 0 0 84 -16,-0.6 -1,-0.2 -2,-0.3 -15,-0.1 0.283 87.7 51.2 -85.9 10.8 5.1 3.0 -11.4 37 37 A E T 45S+ 0 0 114 3,-0.2 -1,-0.2 -17,-0.1 -16,-0.1 0.729 122.1 23.8-112.4 -42.3 8.4 1.2 -10.6 38 38 A R T 45S- 0 0 145 2,-0.2 -2,-0.2 0, 0.0 3,-0.1 0.480 98.9-126.1-102.6 -7.2 7.6 -2.4 -11.6 39 39 A Q T <5 + 0 0 182 -4,-1.1 2,-0.4 1,-0.2 -3,-0.2 0.878 68.0 127.0 63.1 38.9 4.9 -1.5 -14.1 40 40 A A E < -C 35 0A 33 -5,-0.5 -5,-2.9 -7,-0.1 2,-0.8 -0.971 64.2-120.0-130.2 144.3 2.5 -3.9 -12.3 41 41 A R E -C 34 0A 179 -2,-0.4 -7,-0.3 -7,-0.3 2,-0.1 -0.727 34.3-163.5 -85.8 110.5 -1.0 -3.3 -10.9 42 42 A L E -C 33 0A 10 -9,-3.2 -9,-1.3 -2,-0.8 2,-0.5 -0.421 14.9-129.5 -88.9 166.8 -1.0 -4.1 -7.1 43 43 A F E -C 32 0A 68 32,-0.4 34,-0.8 -11,-0.3 2,-0.4 -0.906 24.1-173.7-123.2 103.8 -4.0 -4.7 -4.9 44 44 A F E -Cd 31 77A 0 -13,-2.0 -13,-2.7 -2,-0.5 2,-0.3 -0.777 17.9-133.7 -98.7 139.5 -4.2 -2.7 -1.7 45 45 A H E >> -C 30 0A 66 32,-0.5 3,-2.3 -2,-0.4 4,-1.1 -0.705 21.0-120.1 -93.0 141.8 -6.8 -3.3 1.0 46 46 A C T 34 S+ 0 0 49 -17,-1.1 7,-0.2 -2,-0.3 -16,-0.1 0.729 116.6 61.4 -49.1 -21.8 -8.8 -0.5 2.6 47 47 A S T 34 S+ 0 0 88 -18,-0.2 -1,-0.3 1,-0.2 -17,-0.1 0.826 94.6 60.5 -75.6 -33.0 -7.2 -1.8 5.8 48 48 A Q T <4 S+ 0 0 30 -3,-2.3 -2,-0.2 29,-0.1 -1,-0.2 0.955 84.7 86.7 -58.9 -53.5 -3.7 -1.2 4.6 49 49 A Y < - 0 0 19 -4,-1.1 32,-0.2 30,-0.2 4,-0.2 -0.269 63.2-161.6 -53.0 124.1 -4.2 2.6 4.2 50 50 A N S S+ 0 0 117 30,-2.0 -1,-0.2 2,-0.1 31,-0.1 0.891 74.1 54.5 -76.3 -41.7 -3.5 4.2 7.5 51 51 A G S S- 0 0 32 29,-0.3 2,-0.5 1,-0.1 3,-0.1 0.525 110.6 -65.7 -66.6-140.4 -5.3 7.5 6.7 52 52 A N >> - 0 0 80 1,-0.1 3,-2.7 0, 0.0 4,-1.1 -0.946 28.2-143.0-124.2 111.9 -8.9 7.6 5.5 53 53 A L T 34 S+ 0 0 36 -2,-0.5 -1,-0.1 1,-0.3 -2,-0.0 0.799 99.5 73.9 -36.9 -36.3 -9.9 6.1 2.2 54 54 A Q T 34 S+ 0 0 172 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.898 99.3 42.4 -46.5 -48.2 -12.2 9.1 2.0 55 55 A D T <4 S+ 0 0 96 -3,-2.7 -1,-0.3 2,-0.0 -2,-0.2 0.872 103.4 84.3 -68.2 -38.1 -9.3 11.4 1.3 56 56 A L < + 0 0 7 -4,-1.1 2,-0.3 1,-0.0 6,-0.0 -0.183 59.1 173.4 -63.1 158.5 -7.7 8.8 -1.1 57 57 A K > - 0 0 121 3,-0.1 3,-0.9 -32,-0.0 2,-0.7 -0.981 39.9 -81.3-161.1 165.0 -8.8 8.7 -4.7 58 58 A V T 3 S+ 0 0 78 -2,-0.3 -34,-0.2 1,-0.2 3,-0.1 -0.640 112.5 32.6 -78.0 114.5 -8.1 7.1 -8.1 59 59 A G T 3 S+ 0 0 48 -36,-0.9 2,-0.4 -2,-0.7 -1,-0.2 0.612 89.8 115.7 114.6 21.7 -5.2 8.9 -9.7 60 60 A D < - 0 0 48 -3,-0.9 -37,-1.4 -37,-0.1 -1,-0.4 -0.967 65.8-112.4-125.4 139.4 -3.1 9.9 -6.7 61 61 A D + 0 0 87 -2,-0.4 22,-0.7 -39,-0.2 23,-0.4 -0.347 39.3 175.7 -66.9 145.8 0.4 8.8 -5.7 62 62 A V E - E 0 82A 0 -41,-0.4 -41,-1.5 20,-0.2 2,-0.4 -0.986 25.7-130.3-154.8 142.4 0.7 6.7 -2.6 63 63 A E E +AE 20 81A 65 18,-3.2 18,-2.7 -2,-0.3 2,-0.3 -0.780 36.4 155.3 -97.3 136.6 3.5 4.9 -0.7 64 64 A F E -A 19 0A 0 -45,-3.0 -45,-2.8 -2,-0.4 2,-0.5 -0.891 38.7-110.5-147.9 176.3 3.1 1.2 0.3 65 65 A E E -AE 18 78A 33 13,-1.8 13,-0.7 -2,-0.3 2,-0.5 -0.967 25.5-131.9-121.4 122.2 5.1 -1.9 1.2 66 66 A V E + E 0 77A 38 -49,-0.6 2,-0.2 -2,-0.5 11,-0.2 -0.578 38.9 165.5 -73.7 119.9 5.1 -5.0 -1.1 67 67 A S E - E 0 76A 47 9,-3.1 9,-2.0 -2,-0.5 2,-0.5 -0.728 36.1-110.6-127.4 177.0 4.4 -8.1 0.9 68 68 A S E - E 0 75A 85 -2,-0.2 6,-0.1 7,-0.2 5,-0.0 -0.952 29.2-133.3-117.5 119.8 3.5 -11.8 0.4 69 69 A D - 0 0 24 5,-1.9 -1,-0.0 -2,-0.5 0, 0.0 0.049 7.1-136.5 -58.1 174.7 0.0 -13.1 1.4 70 70 A R S S+ 0 0 202 2,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.504 99.8 44.9-112.2 -12.0 -0.4 -16.3 3.3 71 71 A R S S+ 0 0 206 3,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.784 137.3 7.9 -99.7 -37.9 -3.4 -17.7 1.3 72 72 A T S S- 0 0 77 2,-0.1 -2,-0.1 0, 0.0 -3,-0.0 0.526 84.9-138.9-118.5 -16.5 -2.2 -16.9 -2.2 73 73 A G + 0 0 45 1,-0.2 -3,-0.1 -5,-0.0 0, 0.0 0.689 52.0 149.5 63.2 17.0 1.4 -15.8 -1.5 74 74 A K - 0 0 133 -6,-0.1 -5,-1.9 1,-0.1 2,-0.9 -0.501 59.6 -95.2 -83.3 152.0 0.8 -13.1 -4.1 75 75 A P E + E 0 68A 75 0, 0.0 -32,-0.4 0, 0.0 2,-0.3 -0.534 57.2 169.0 -69.8 102.6 2.6 -9.7 -3.9 76 76 A I E - E 0 67A 25 -9,-2.0 -9,-3.1 -2,-0.9 2,-0.2 -0.805 32.8-111.2-116.3 158.2 0.1 -7.4 -2.2 77 77 A A E +dE 44 66A 0 -34,-0.8 -32,-0.5 -2,-0.3 2,-0.3 -0.531 35.3 178.5 -86.5 153.6 0.4 -3.9 -0.8 78 78 A V E + E 0 65A 23 -13,-0.7 -13,-1.8 -2,-0.2 3,-0.1 -0.982 55.0 21.6-151.5 159.6 0.2 -3.1 3.0 79 79 A K E S- 0 0 116 -2,-0.3 -30,-0.2 -15,-0.2 -1,-0.1 0.900 79.7-162.4 47.0 48.3 0.5 -0.2 5.4 80 80 A L E - 0 0 0 -35,-0.2 -30,-2.0 -16,-0.1 2,-0.3 -0.210 12.3-176.7 -59.5 150.4 -0.4 2.2 2.6 81 81 A V E - E 0 63A 37 -18,-2.7 -18,-3.2 -32,-0.2 -32,-0.1 -0.895 28.7-116.3-156.7 121.9 0.4 5.9 3.1 82 82 A K E - E 0 62A 57 -2,-0.3 -20,-0.2 -20,-0.3 -21,-0.0 -0.329 17.9-151.7 -58.5 131.1 -0.3 8.9 0.9 83 83 A I S S+ 0 0 86 -22,-0.7 2,-0.6 1,-0.1 -1,-0.1 0.946 80.9 65.0 -70.0 -50.2 2.9 10.6 -0.2 84 84 A S S S+ 0 0 82 -23,-0.4 -1,-0.1 1,-0.1 -2,-0.1 -0.655 73.5 85.6 -79.9 119.1 1.5 14.1 -0.6 85 85 A G + 0 0 49 -2,-0.6 -1,-0.1 0, 0.0 -3,-0.0 0.300 34.5 173.9 150.7 65.6 0.4 15.4 2.8 86 86 A P + 0 0 137 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 0.420 42.0 134.7 -69.8 3.6 3.0 17.2 5.0 87 87 A S - 0 0 104 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.219 63.4-101.7 -56.0 142.5 0.2 18.0 7.3 88 88 A S 0 0 131 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.071 360.0 360.0 -56.8 175.2 1.0 17.4 11.0 89 89 A G 0 0 124 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.068 360.0 360.0-150.8 360.0 -0.3 14.4 12.8