==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-MAY-04 1WG1 . COMPND 2 MOLECULE: KIAA1579 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,T.NAGATA,S.SUZUKI,T.SOMEYA,T.KIGAWA,T.TERADA, . 88 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6572.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 90 A G 0 0 139 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.8 -3.0 27.4 -1.9 2 91 A S + 0 0 122 1,-0.1 2,-0.0 2,-0.0 0, 0.0 0.690 360.0 71.3-120.0 -55.0 -1.0 25.8 -4.8 3 92 A S - 0 0 119 1,-0.1 2,-0.2 46,-0.1 -1,-0.1 -0.338 65.5-162.5 -68.0 148.6 0.7 22.7 -3.5 4 93 A G - 0 0 50 -3,-0.1 2,-2.0 -2,-0.0 -1,-0.1 -0.610 38.8 -66.4-123.5-175.8 -1.4 19.6 -2.8 5 94 A S + 0 0 43 -2,-0.2 2,-1.5 1,-0.1 49,-0.2 -0.514 53.4 179.7 -75.6 81.4 -1.3 16.3 -0.9 6 95 A S + 0 0 32 -2,-2.0 2,-0.2 42,-0.1 44,-0.2 -0.618 47.5 66.3 -86.8 82.1 1.4 14.7 -3.0 7 96 A G - 0 0 0 -2,-1.5 68,-0.8 39,-0.2 2,-0.3 -0.846 55.1-154.3 171.3 152.2 1.7 11.3 -1.3 8 97 A I E -AB 45 74A 1 37,-2.3 37,-2.2 -2,-0.2 2,-0.5 -0.960 18.0-125.4-140.5 157.5 -0.1 8.1 -0.4 9 98 A L E -AB 44 73A 16 64,-2.4 64,-1.6 -2,-0.3 2,-1.0 -0.907 14.2-148.5-108.6 127.4 0.1 5.4 2.3 10 99 A V E +AB 43 72A 11 33,-2.0 33,-1.9 -2,-0.5 62,-0.2 -0.782 30.5 167.0 -96.9 97.0 0.5 1.7 1.3 11 100 A K E + B 0 71A 66 60,-3.0 60,-1.8 -2,-1.0 31,-0.1 -0.568 48.6 42.8-104.4 170.0 -1.3 -0.4 3.9 12 101 A N S S+ 0 0 73 29,-0.3 -1,-0.2 58,-0.2 30,-0.1 0.954 76.3 174.5 60.3 52.8 -2.2 -4.1 4.0 13 102 A L - 0 0 11 28,-0.9 -1,-0.2 -3,-0.2 56,-0.0 -0.597 27.4-115.5 -91.9 153.0 1.1 -5.3 2.6 14 103 A P - 0 0 20 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.152 32.3 -98.2 -69.8-168.0 2.1 -8.9 2.2 15 104 A Q S S+ 0 0 196 1,-0.2 26,-0.1 26,-0.0 -2,-0.0 0.762 123.9 42.1 -86.8 -28.7 4.9 -10.7 4.0 16 105 A D S S+ 0 0 122 2,-0.1 -1,-0.2 22,-0.0 2,-0.1 0.037 84.9 144.5-105.1 24.2 7.4 -10.3 1.1 17 106 A S + 0 0 5 -3,-0.3 2,-0.3 4,-0.1 21,-0.1 -0.371 20.1 162.9 -65.8 140.1 6.4 -6.8 0.4 18 107 A N > - 0 0 51 1,-0.1 4,-1.7 -2,-0.1 3,-0.5 -0.965 49.8-108.4-153.0 166.3 9.2 -4.5 -0.8 19 108 A a H > S+ 0 0 32 -2,-0.3 4,-3.0 1,-0.2 5,-0.3 0.956 112.4 64.4 -63.3 -52.4 9.9 -1.1 -2.5 20 109 A Q H > S+ 0 0 172 1,-0.3 4,-1.1 2,-0.2 -1,-0.2 0.796 108.5 44.8 -41.1 -33.3 11.1 -2.7 -5.7 21 110 A E H > S+ 0 0 56 -3,-0.5 4,-1.9 2,-0.2 -1,-0.3 0.903 114.3 46.2 -79.8 -44.9 7.6 -4.0 -6.0 22 111 A V H X S+ 0 0 9 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.953 109.0 55.0 -62.6 -51.9 5.8 -0.8 -5.1 23 112 A H H < S+ 0 0 98 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.929 111.5 44.0 -46.6 -55.9 7.9 1.4 -7.4 24 113 A D H >< S+ 0 0 82 -4,-1.1 3,-1.4 -5,-0.3 -1,-0.2 0.881 110.2 57.7 -58.6 -39.7 7.1 -0.8 -10.4 25 114 A L H 3< S+ 0 0 29 -4,-1.9 3,-0.5 1,-0.3 2,-0.4 0.941 110.2 41.8 -56.6 -51.1 3.4 -0.9 -9.3 26 115 A L T 3< S+ 0 0 4 -4,-2.6 -1,-0.3 1,-0.2 3,-0.3 -0.212 77.0 128.7 -91.6 43.6 3.1 2.9 -9.3 27 116 A K < + 0 0 154 -3,-1.4 -1,-0.2 -2,-0.4 -2,-0.1 0.898 63.9 63.6 -64.3 -41.6 5.1 3.2 -12.6 28 117 A D S S+ 0 0 131 -3,-0.5 -1,-0.2 -4,-0.2 2,-0.2 0.878 105.0 53.6 -49.9 -42.3 2.4 5.4 -14.2 29 118 A Y S S- 0 0 34 -3,-0.3 2,-0.7 23,-0.0 18,-0.0 -0.513 95.3-107.6 -93.6 163.6 3.1 8.0 -11.6 30 119 A D - 0 0 103 -2,-0.2 2,-0.3 19,-0.1 18,-0.1 -0.823 32.1-153.5 -96.0 112.0 6.5 9.6 -10.7 31 120 A L + 0 0 26 -2,-0.7 16,-0.2 16,-0.2 3,-0.1 -0.644 17.9 179.0 -86.1 139.3 7.8 8.4 -7.3 32 121 A K - 0 0 147 14,-2.6 2,-0.3 1,-0.4 -1,-0.1 0.752 68.8 -0.3-105.5 -38.0 10.1 10.6 -5.3 33 122 A Y - 0 0 153 13,-0.5 13,-1.9 2,-0.0 -1,-0.4 -0.994 56.3-162.3-154.3 150.2 10.7 8.5 -2.2 34 123 A a E -C 45 0A 37 -2,-0.3 2,-0.4 11,-0.2 11,-0.2 -0.991 5.1-178.2-140.4 129.3 9.7 5.1 -0.8 35 124 A Y E -C 44 0A 129 9,-1.6 9,-2.0 -2,-0.4 2,-0.4 -0.864 11.0-162.4-131.1 99.0 9.9 3.8 2.8 36 125 A V E -C 43 0A 23 -2,-0.4 2,-0.6 7,-0.3 7,-0.3 -0.663 1.9-167.3 -83.3 129.2 8.7 0.2 3.4 37 126 A D E > > +C 42 0A 43 5,-2.3 5,-1.9 -2,-0.4 3,-0.5 -0.802 11.0 176.7-119.9 89.0 7.9 -0.7 7.0 38 127 A R G > 5S+ 0 0 158 -2,-0.6 3,-1.7 3,-0.2 -1,-0.2 0.924 80.6 62.5 -54.6 -48.5 7.6 -4.4 7.4 39 128 A N G 3 5S+ 0 0 145 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.880 123.5 20.8 -44.5 -45.9 7.1 -4.1 11.1 40 129 A K G < 5S- 0 0 120 -3,-0.5 -1,-0.3 2,-0.2 -2,-0.2 0.178 104.5-127.3-109.5 14.2 3.9 -2.1 10.4 41 130 A R T < 5 + 0 0 141 -3,-1.7 -28,-0.9 -4,-0.3 2,-0.4 0.880 66.1 132.4 38.2 53.6 3.5 -3.4 6.9 42 131 A T E < - C 0 37A 12 -5,-1.9 -5,-2.3 -31,-0.1 2,-0.5 -0.995 41.2-165.4-138.1 131.0 3.3 0.2 5.6 43 132 A A E -AC 10 36A 1 -33,-1.9 -33,-2.0 -2,-0.4 2,-0.6 -0.948 12.0-149.4-120.1 114.2 5.1 1.8 2.7 44 133 A F E -AC 9 35A 70 -9,-2.0 -9,-1.6 -2,-0.5 2,-0.4 -0.712 17.8-171.1 -84.7 117.7 5.1 5.6 2.4 45 134 A V E -AC 8 34A 0 -37,-2.2 -37,-2.3 -2,-0.6 2,-0.7 -0.912 13.9-152.7-113.2 136.2 5.2 6.7 -1.2 46 135 A T - 0 0 46 -13,-1.9 -14,-2.6 -2,-0.4 -13,-0.5 -0.859 17.6-166.5-110.5 99.4 5.7 10.3 -2.4 47 136 A L - 0 0 2 -2,-0.7 -16,-0.2 -16,-0.2 3,-0.1 -0.017 29.7-108.6 -71.4-178.1 4.1 11.0 -5.7 48 137 A L S S+ 0 0 77 1,-0.2 2,-0.2 -18,-0.1 -42,-0.1 0.977 92.9 10.1 -77.7 -64.0 4.8 14.0 -7.9 49 138 A N > - 0 0 82 1,-0.1 4,-0.9 -44,-0.1 -1,-0.2 -0.731 70.0-121.2-115.5 165.6 1.5 16.0 -7.6 50 139 A G H >> S+ 0 0 8 -2,-0.2 4,-2.1 2,-0.2 3,-1.0 0.949 107.6 60.8 -70.0 -50.4 -1.5 15.6 -5.4 51 140 A E H 3> S+ 0 0 147 1,-0.3 4,-1.1 2,-0.2 5,-0.2 0.870 100.2 58.5 -43.6 -44.7 -4.1 15.1 -8.1 52 141 A Q H >> S+ 0 0 37 1,-0.2 4,-3.3 2,-0.2 3,-0.5 0.914 108.8 44.2 -53.3 -47.0 -2.2 12.0 -9.2 53 142 A A H < S+ 0 0 24 -4,-1.6 3,-2.0 -3,-0.5 -1,-0.3 0.480 95.7 124.9-115.1 -10.9 -4.9 1.1 -6.9 61 150 A H T 3< S- 0 0 55 -4,-1.6 10,-0.2 1,-0.3 9,-0.2 -0.194 88.7 -1.1 -52.6 139.7 -7.1 0.7 -3.8 62 151 A Q T 3 S+ 0 0 117 8,-1.6 -1,-0.3 7,-0.4 9,-0.2 0.802 99.1 173.8 45.7 32.1 -7.7 -2.9 -2.9 63 152 A Y E < -D 70 0B 103 -3,-2.0 7,-1.3 7,-1.1 2,-0.8 -0.204 41.3 -93.1 -66.2 160.0 -5.6 -3.7 -6.0 64 153 A S E +D 69 0B 90 5,-0.2 2,-0.3 -3,-0.1 5,-0.2 -0.671 63.4 145.6 -80.6 110.5 -4.7 -7.3 -6.8 65 154 A F E > S-D 68 0B 17 3,-1.7 3,-1.4 -2,-0.8 5,-0.1 -0.849 73.8 -21.8-151.4 109.8 -1.3 -8.0 -5.3 66 155 A R T 3 S- 0 0 149 -2,-0.3 3,-0.1 1,-0.3 -2,-0.0 0.898 120.8 -59.1 58.5 42.3 -0.2 -11.4 -3.9 67 156 A G T 3 S+ 0 0 74 1,-0.2 -1,-0.3 -53,-0.0 2,-0.2 0.675 119.3 111.6 62.0 15.6 -3.8 -12.4 -3.4 68 157 A K E < S-D 65 0B 105 -3,-1.4 -3,-1.7 -5,-0.0 2,-0.6 -0.670 73.5-119.8-115.0 171.1 -4.1 -9.4 -1.1 69 158 A D E -D 64 0B 89 -2,-0.2 -7,-0.4 -5,-0.2 -5,-0.2 -0.751 27.5-143.7-114.6 83.4 -6.0 -6.0 -1.4 70 159 A L E -D 63 0B 8 -7,-1.3 -8,-1.6 -2,-0.6 -7,-1.1 -0.218 15.3-145.4 -47.9 116.4 -3.4 -3.3 -1.3 71 160 A I E -B 11 0A 56 -60,-1.8 -60,-3.0 -10,-0.2 2,-0.5 -0.803 14.7-166.4 -93.8 117.2 -5.1 -0.5 0.7 72 161 A V E +B 10 0A 11 -2,-0.6 2,-0.2 -15,-0.3 -62,-0.2 -0.884 13.2 167.3-106.8 131.4 -4.1 3.0 -0.5 73 162 A Q E -B 9 0A 103 -64,-1.6 -64,-2.4 -2,-0.5 2,-0.1 -0.783 35.4 -88.3-132.5 176.0 -4.8 6.1 1.6 74 163 A L E -B 8 0A 75 -2,-0.2 -66,-0.2 -66,-0.2 -1,-0.1 -0.361 46.1 -99.2 -83.2 165.9 -3.9 9.8 1.7 75 164 A Q - 0 0 47 -68,-0.8 -1,-0.1 -70,-0.1 -68,-0.1 -0.436 22.3-121.3 -84.0 159.2 -0.9 11.3 3.6 76 165 A P + 0 0 86 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.755 67.9 131.2 -69.8 -25.2 -1.1 12.9 7.0 77 166 A T + 0 0 94 2,-0.1 2,-0.3 1,-0.0 -2,-0.1 -0.009 36.3 160.3 -34.2 96.4 0.3 16.2 5.6 78 167 A D - 0 0 114 -73,-0.0 -1,-0.0 2,-0.0 0, 0.0 -0.851 52.0-127.8-126.0 161.9 -2.3 18.5 7.1 79 168 A A - 0 0 84 -2,-0.3 3,-0.1 2,-0.1 -2,-0.1 -0.080 57.2-102.6 -98.2 33.1 -2.5 22.3 7.8 80 169 A L + 0 0 158 1,-0.2 2,-1.1 2,-0.1 3,-0.2 0.909 62.7 166.6 46.9 50.5 -3.5 21.7 11.5 81 170 A L + 0 0 120 1,-0.2 -1,-0.2 3,-0.0 -2,-0.1 -0.712 13.7 175.0 -98.9 84.3 -7.1 22.5 10.6 82 171 A C S S- 0 0 130 -2,-1.1 2,-0.3 -3,-0.1 -1,-0.2 0.910 70.5 -7.6 -53.1 -46.4 -9.1 21.3 13.7 83 172 A S - 0 0 96 -3,-0.2 -1,-0.1 0, 0.0 3,-0.1 -0.866 52.2-153.0-143.6 176.1 -12.3 22.7 12.2 84 173 A G + 0 0 60 -2,-0.3 -3,-0.0 1,-0.1 -2,-0.0 -0.343 28.0 153.1-156.6 66.8 -13.6 24.8 9.3 85 174 A P > + 0 0 109 0, 0.0 3,-3.2 0, 0.0 -1,-0.1 0.687 33.8 130.0 -69.8 -18.6 -16.9 26.7 10.1 86 175 A S T 3 S- 0 0 103 1,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.137 99.7 -28.8 -42.3 105.4 -15.9 29.3 7.5 87 176 A S T 3 0 0 126 1,-0.2 -1,-0.3 0, 0.0 0, 0.0 0.871 360.0 360.0 46.3 42.8 -19.1 29.5 5.5 88 177 A G < 0 0 103 -3,-3.2 -1,-0.2 0, 0.0 -2,-0.1 -0.586 360.0 360.0 -92.6 360.0 -19.7 25.9 6.4