==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-MAY-04 1WGD . COMPND 2 MOLECULE: HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAKANISHI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6760.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 55.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 14.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.8 0, 0.0 28,-0.0 0.000 360.0 360.0 360.0 86.9 15.0 -11.5 -7.9 2 2 A S + 0 0 125 2,-0.0 2,-0.3 27,-0.0 0, 0.0 -0.835 360.0 124.7 -97.0 107.8 14.2 -15.1 -8.3 3 3 A S + 0 0 71 -2,-0.8 2,-0.1 2,-0.0 24,-0.0 -0.960 17.6 155.5-162.3 144.3 10.7 -15.9 -6.9 4 4 A G + 0 0 77 -2,-0.3 -2,-0.0 3,-0.0 3,-0.0 -0.407 32.5 111.8-175.2 88.6 7.5 -17.4 -8.0 5 5 A S S S- 0 0 101 -2,-0.1 22,-0.0 0, 0.0 -2,-0.0 0.620 86.8 -76.2-125.4 -59.1 5.0 -18.9 -5.6 6 6 A S - 0 0 108 0, 0.0 2,-0.3 0, 0.0 21,-0.2 0.023 66.3 -98.7-173.1 -60.2 1.9 -16.8 -5.4 7 7 A G - 0 0 25 19,-0.1 2,-0.3 18,-0.1 20,-0.1 -0.847 32.7 -78.8 144.8-179.3 2.3 -13.6 -3.3 8 8 A V - 0 0 11 -2,-0.3 18,-1.9 68,-0.1 2,-0.7 -0.842 36.1-115.0-117.4 154.7 1.7 -12.1 0.1 9 9 A T E -A 25 0A 49 -2,-0.3 69,-2.4 16,-0.2 2,-0.6 -0.810 27.9-163.0 -93.3 116.0 -1.5 -10.7 1.6 10 10 A L E -Ab 24 78A 0 14,-3.5 14,-2.1 -2,-0.7 2,-1.0 -0.884 10.4-146.0-102.8 122.4 -1.2 -7.0 2.3 11 11 A L E -Ab 23 79A 20 67,-3.5 69,-1.5 -2,-0.6 2,-1.4 -0.771 10.0-152.0 -90.3 101.7 -3.8 -5.5 4.7 12 12 A V E +Ab 22 80A 2 10,-4.0 10,-0.8 -2,-1.0 69,-0.2 -0.614 27.3 174.7 -76.9 94.4 -4.5 -2.0 3.4 13 13 A K E - b 0 81A 67 67,-3.9 69,-0.8 -2,-1.4 8,-0.1 -0.557 21.7-137.2 -98.7 165.3 -5.5 -0.3 6.7 14 14 A S - 0 0 20 6,-0.2 2,-2.6 -2,-0.2 4,-0.2 -0.982 19.1-121.3-128.1 138.0 -6.3 3.3 7.3 15 15 A P S S- 0 0 66 0, 0.0 66,-0.0 0, 0.0 -2,-0.0 -0.434 76.6 -70.1 -75.0 69.8 -5.2 5.5 10.2 16 16 A N S S+ 0 0 150 -2,-2.6 -3,-0.0 1,-0.1 0, 0.0 0.923 112.3 110.4 40.5 65.9 -8.8 6.3 11.2 17 17 A Q S S- 0 0 71 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.095 95.1 -4.2-151.9 21.1 -9.4 8.4 8.1 18 18 A R S S- 0 0 100 -4,-0.2 2,-0.0 2,-0.0 0, 0.0 0.102 89.5-138.5 178.6 -38.5 -11.8 6.3 6.1 19 19 A H + 0 0 142 1,-0.2 0, 0.0 -5,-0.0 0, 0.0 -0.022 57.9 75.8 80.9 170.4 -12.3 3.1 8.0 20 20 A R - 0 0 190 -6,-0.1 2,-0.2 -7,-0.0 -6,-0.2 0.272 65.1-122.0 69.9 158.0 -12.6 -0.4 6.5 21 21 A D - 0 0 95 -8,-0.1 2,-0.3 2,-0.0 -8,-0.2 -0.741 10.6-148.5-127.8 175.6 -9.6 -2.4 5.2 22 22 A L E -A 12 0A 56 -10,-0.8 -10,-4.0 -2,-0.2 2,-0.6 -0.912 4.2-155.6-153.2 120.3 -8.6 -4.1 2.0 23 23 A E E +A 11 0A 104 -2,-0.3 2,-0.3 -12,-0.2 -12,-0.2 -0.879 27.5 158.3-102.1 118.2 -6.5 -7.2 1.6 24 24 A L E -A 10 0A 15 -14,-2.1 -14,-3.5 -2,-0.6 2,-0.1 -0.796 44.6 -78.8-130.7 172.3 -4.7 -7.5 -1.7 25 25 A S E -A 9 0A 47 -2,-0.3 -16,-0.2 -16,-0.2 -18,-0.1 -0.371 32.6-176.1 -72.1 151.8 -1.7 -9.4 -3.1 26 26 A G - 0 0 0 -18,-1.9 -19,-0.1 -2,-0.1 -17,-0.1 -0.237 11.5-166.0-144.9 48.1 1.8 -8.1 -2.4 27 27 A D > - 0 0 42 -21,-0.2 3,-1.6 1,-0.2 40,-0.4 -0.009 30.1-123.2 -37.9 137.5 4.1 -10.4 -4.3 28 28 A R T 3 S+ 0 0 63 1,-0.3 40,-1.2 39,-0.2 41,-0.2 0.635 115.2 57.4 -62.0 -13.1 7.7 -9.9 -3.1 29 29 A G T 3 S+ 0 0 45 38,-0.1 -1,-0.3 37,-0.1 -2,-0.1 0.686 88.0 95.8 -89.3 -22.7 8.4 -9.1 -6.7 30 30 A W S < S- 0 0 47 -3,-1.6 37,-0.5 1,-0.1 2,-0.4 0.163 73.4-124.8 -54.6-176.1 5.9 -6.3 -6.8 31 31 A S >> - 0 0 42 35,-0.2 4,-4.0 1,-0.1 3,-0.5 -0.986 9.4-130.3-143.8 128.9 7.0 -2.7 -6.3 32 32 A V H 3> S+ 0 0 0 33,-1.9 4,-2.6 -2,-0.4 32,-0.2 0.877 115.8 48.4 -38.7 -51.4 5.8 -0.2 -3.7 33 33 A G H 3> S+ 0 0 23 30,-3.8 4,-1.2 32,-0.3 -1,-0.3 0.898 118.1 40.3 -58.0 -43.9 5.5 2.3 -6.6 34 34 A H H <> S+ 0 0 112 -3,-0.5 4,-2.5 29,-0.5 5,-0.3 0.968 110.1 57.0 -69.3 -55.9 3.6 -0.3 -8.7 35 35 A L H X S+ 0 0 2 -4,-4.0 4,-3.8 1,-0.2 5,-0.2 0.893 101.1 60.0 -39.5 -54.8 1.5 -1.7 -5.8 36 36 A K H X S+ 0 0 17 -4,-2.6 4,-3.0 -5,-0.3 3,-0.3 0.911 108.7 41.6 -38.6 -65.8 0.2 1.9 -5.3 37 37 A A H X S+ 0 0 38 -4,-1.2 4,-1.4 1,-0.3 -1,-0.2 0.936 113.8 52.7 -48.5 -55.5 -1.2 2.0 -8.8 38 38 A H H X S+ 0 0 65 -4,-2.5 4,-1.5 1,-0.2 3,-0.4 0.874 111.6 48.4 -48.2 -42.6 -2.4 -1.6 -8.4 39 39 A L H X S+ 0 0 2 -4,-3.8 4,-3.1 -3,-0.3 -2,-0.2 0.976 99.7 62.3 -62.5 -58.1 -4.1 -0.4 -5.2 40 40 A S H < S+ 0 0 17 -4,-3.0 6,-0.8 1,-0.2 5,-0.3 0.767 105.5 54.2 -37.8 -30.8 -5.7 2.7 -6.7 41 41 A R H < S+ 0 0 205 -4,-1.4 -1,-0.2 -3,-0.4 4,-0.2 0.998 109.6 39.2 -68.8 -70.2 -7.4 0.1 -8.9 42 42 A V H < S+ 0 0 65 -4,-1.5 -2,-0.2 2,-0.1 -1,-0.2 0.745 105.3 90.8 -52.2 -23.2 -9.0 -2.2 -6.2 43 43 A Y S >< S- 0 0 6 -4,-3.1 3,-1.4 -5,-0.2 2,-1.3 -0.670 85.4-129.0 -81.8 123.6 -9.6 1.1 -4.5 44 44 A P T 3 S+ 0 0 103 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.587 95.4 47.6 -75.0 94.2 -13.0 2.7 -5.3 45 45 A E T 3 S- 0 0 79 -2,-1.3 -4,-0.1 -5,-0.3 -5,-0.1 0.057 98.4-119.2 166.0 -32.4 -11.9 6.2 -6.3 46 46 A R < - 0 0 200 -3,-1.4 -5,-0.1 -6,-0.8 -6,-0.1 0.988 45.1-177.4 67.9 62.4 -9.0 5.8 -8.7 47 47 A P - 0 0 22 0, 0.0 -2,-0.1 0, 0.0 39,-0.1 0.135 27.9 -85.0 -75.1-164.8 -6.4 7.7 -6.7 48 48 A R > - 0 0 144 37,-0.3 4,-2.9 1,-0.1 37,-0.2 -0.817 15.4-138.6-110.1 149.8 -2.8 8.4 -7.8 49 49 A P T 4 S+ 0 0 63 0, 0.0 -13,-0.1 0, 0.0 -12,-0.1 0.719 109.1 49.1 -75.0 -22.6 0.2 6.1 -7.4 50 50 A E T 4 S+ 0 0 172 1,-0.1 -17,-0.0 -14,-0.1 -14,-0.0 0.728 116.4 41.7 -86.2 -25.8 2.3 9.1 -6.3 51 51 A D T 4 S+ 0 0 40 2,-0.1 32,-0.1 34,-0.0 -1,-0.1 0.888 87.8 99.8 -85.7 -46.6 -0.3 10.2 -3.8 52 52 A Q < - 0 0 1 -4,-2.9 2,-0.8 1,-0.1 32,-0.2 -0.206 69.1-147.0 -46.0 109.6 -1.1 6.8 -2.4 53 53 A R E -C 83 0A 138 30,-3.2 30,-2.8 -17,-0.1 2,-0.6 -0.771 9.7-159.1 -89.3 109.5 0.9 6.8 0.8 54 54 A L E +C 82 0A 0 -2,-0.8 7,-4.5 7,-0.3 2,-0.4 -0.805 16.9 174.2 -92.7 119.0 2.1 3.2 1.5 55 55 A I E -CD 81 60A 23 26,-1.3 26,-3.1 -2,-0.6 2,-0.4 -0.954 18.4-163.6-126.8 145.2 3.0 2.7 5.1 56 56 A Y E > S-CD 80 59A 50 3,-3.0 3,-1.0 -2,-0.4 24,-0.2 -0.862 80.0 -24.5-132.8 98.1 4.0 -0.5 6.9 57 57 A S T 3 S- 0 0 95 22,-0.5 3,-0.1 -2,-0.4 23,-0.1 0.813 126.4 -51.7 71.0 31.6 3.9 -0.4 10.7 58 58 A G T 3 S+ 0 0 59 1,-0.3 2,-0.6 23,-0.0 -1,-0.3 -0.106 114.0 119.9 96.1 -33.9 4.3 3.3 10.6 59 59 A K E < -D 56 0A 137 -3,-1.0 -3,-3.0 -4,-0.1 -1,-0.3 -0.544 65.7-131.5 -69.1 112.6 7.3 3.1 8.4 60 60 A L E -D 55 0A 94 -2,-0.6 -5,-0.3 -5,-0.3 2,-0.2 -0.413 19.5-131.9 -67.0 138.8 6.4 5.0 5.2 61 61 A L - 0 0 10 -7,-4.5 -7,-0.3 1,-0.2 -1,-0.1 -0.536 9.5-151.3 -90.9 159.1 7.2 3.1 2.0 62 62 A L - 0 0 73 -2,-0.2 -8,-0.2 -9,-0.1 -1,-0.2 0.796 27.1-117.2 -91.5 -96.9 9.1 4.6 -0.9 63 63 A D S S+ 0 0 78 -31,-0.1 -30,-3.8 -28,-0.0 -29,-0.5 0.080 102.3 55.3-177.4 -45.0 8.2 3.1 -4.3 64 64 A H S S+ 0 0 136 -32,-0.2 -30,-0.0 -31,-0.1 -3,-0.0 0.778 85.4 104.9 -76.2 -28.4 11.3 1.5 -5.7 65 65 A Q S S- 0 0 65 -34,-0.1 -33,-1.9 1,-0.1 2,-0.3 -0.161 72.2-126.6 -53.3 146.2 11.6 -0.6 -2.6 66 66 A C > - 0 0 50 -35,-0.2 4,-2.3 1,-0.1 -35,-0.2 -0.723 7.7-130.2 -98.8 149.0 10.6 -4.2 -3.0 67 67 A L H > S+ 0 0 0 -37,-0.5 4,-2.0 -40,-0.4 -39,-0.2 0.882 105.7 66.9 -62.3 -39.6 8.1 -5.9 -0.8 68 68 A R H 4 S+ 0 0 116 -40,-1.2 -1,-0.2 -38,-0.2 -39,-0.1 0.920 108.3 36.7 -45.1 -56.3 10.5 -8.8 -0.3 69 69 A D H 4 S+ 0 0 107 -41,-0.2 -1,-0.2 -3,-0.1 -2,-0.2 0.959 123.5 44.4 -62.5 -53.3 12.9 -6.5 1.6 70 70 A L H < S+ 0 0 28 -4,-2.3 -2,-0.2 -42,-0.1 -3,-0.2 0.981 107.4 59.5 -53.2 -79.5 10.1 -4.6 3.3 71 71 A L S < S- 0 0 2 -4,-2.0 7,-0.1 1,-0.1 -5,-0.0 -0.053 94.2-109.3 -49.4 154.7 7.9 -7.5 4.3 72 72 A P - 0 0 44 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.081 13.3-126.4 -75.0-168.5 9.5 -10.1 6.6 73 73 A K S S+ 0 0 149 3,-0.0 3,-0.1 -4,-0.0 -2,-0.0 -0.236 96.3 28.3-137.7 43.7 10.5 -13.6 5.8 74 74 A Q S S+ 0 0 169 1,-0.2 0, 0.0 0, 0.0 0, 0.0 0.162 93.6 83.1-161.1 -62.7 8.7 -15.6 8.4 75 75 A E S S- 0 0 151 1,-0.1 2,-0.4 0, 0.0 -1,-0.2 0.130 76.5-111.8 -49.5 173.5 5.5 -14.0 9.7 76 76 A K - 0 0 178 -3,-0.1 -1,-0.1 -68,-0.0 -68,-0.1 -0.907 68.7 -12.0-117.2 144.3 2.3 -14.5 7.8 77 77 A R S S- 0 0 146 -2,-0.4 2,-0.3 1,-0.1 -67,-0.2 0.259 71.6-120.5 53.7 170.8 0.3 -11.8 6.0 78 78 A H E -b 10 0A 19 -69,-2.4 -67,-3.5 -7,-0.1 2,-0.7 -0.992 3.4-137.9-147.8 148.7 1.1 -8.1 6.3 79 79 A V E +b 11 0A 57 -2,-0.3 -22,-0.5 -69,-0.2 2,-0.2 -0.915 28.6 180.0-113.2 105.6 -0.8 -5.0 7.5 80 80 A L E -bC 12 56A 2 -69,-1.5 -67,-3.9 -2,-0.7 2,-0.4 -0.539 22.2-138.4 -99.3 167.6 -0.1 -2.0 5.3 81 81 A H E -bC 13 55A 46 -26,-3.1 -26,-1.3 -69,-0.2 2,-0.8 -0.865 14.8-170.6-132.2 97.5 -1.5 1.5 5.5 82 82 A L E - C 0 54A 0 -69,-0.8 2,-0.6 -2,-0.4 -28,-0.2 -0.801 8.3-164.7 -92.1 108.5 -2.5 3.1 2.3 83 83 A V E - C 0 53A 22 -30,-2.8 -30,-3.2 -2,-0.8 2,-0.3 -0.843 10.8-141.9 -97.8 123.3 -3.3 6.7 2.9 84 84 A C - 0 0 29 -2,-0.6 2,-0.4 -32,-0.2 -32,-0.1 -0.633 17.9-172.5 -84.4 140.2 -5.2 8.5 0.1 85 85 A N - 0 0 88 -2,-0.3 -37,-0.3 -37,-0.2 -33,-0.1 -0.968 1.6-170.0-139.1 119.2 -4.2 12.1 -0.6 86 86 A V - 0 0 109 -2,-0.4 3,-0.1 -35,-0.1 2,-0.0 0.208 30.1-109.7 -84.1-151.9 -6.1 14.4 -3.0 87 87 A K - 0 0 168 1,-0.5 -2,-0.0 0, 0.0 -36,-0.0 -0.494 67.8 -60.5-148.2 69.7 -5.0 17.7 -4.3 88 88 A S - 0 0 120 2,-0.0 -1,-0.5 1,-0.0 0, 0.0 0.478 58.7-125.8 63.0 146.2 -7.2 20.5 -2.8 89 89 A G - 0 0 58 -3,-0.1 2,-2.1 0, 0.0 -1,-0.0 -0.823 27.6 -91.7-124.0 163.3 -10.9 20.6 -3.3 90 90 A P - 0 0 130 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.507 52.2-151.0 -75.1 79.0 -13.4 23.1 -4.5 91 91 A S + 0 0 101 -2,-2.1 0, 0.0 2,-0.1 0, 0.0 0.037 58.9 23.9 -45.7 159.1 -14.2 24.6 -1.1 92 92 A S 0 0 115 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.326 360.0 360.0 60.3 160.3 -17.7 26.1 -0.7 93 93 A G 0 0 133 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.631 360.0 360.0 97.8 360.0 -20.7 25.0 -2.8