==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 28-MAY-04 1WGM . COMPND 2 MOLECULE: UBIQUITIN CONJUGATION FACTOR E4A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8221.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 6,-0.1 0, 0.0 2,-0.0 0.000 360.0 360.0 360.0-174.8 4.7 24.9 30.6 2 2 A S - 0 0 99 1,-0.1 5,-0.0 4,-0.1 3,-0.0 -0.140 360.0-173.9 -79.0 179.2 5.1 27.3 27.6 3 3 A S - 0 0 127 -2,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.480 65.6 -19.2-140.9 -47.4 7.3 30.4 27.5 4 4 A G S S- 0 0 59 3,-0.0 3,-0.1 0, 0.0 0, 0.0 -0.638 121.6 -12.6-175.9 112.8 6.6 32.3 24.2 5 5 A S S S+ 0 0 138 1,-0.2 2,-0.2 -2,-0.2 0, 0.0 0.888 97.9 132.9 60.8 40.6 5.0 31.3 20.9 6 6 A S + 0 0 69 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.699 27.1 165.0-117.2 170.3 5.2 27.6 21.9 7 7 A G - 0 0 72 -2,-0.2 3,-0.2 1,-0.1 -3,-0.0 -0.931 41.2-123.5-178.8 155.3 2.8 24.7 21.8 8 8 A L S S- 0 0 190 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.958 93.8 -15.0 -72.7 -53.4 2.4 20.9 22.0 9 9 A Q - 0 0 132 0, 0.0 2,-0.8 0, 0.0 -1,-0.3 -0.932 49.7-155.3-157.7 129.7 0.7 20.4 18.7 10 10 A Q - 0 0 159 1,-0.4 3,-0.0 -2,-0.3 -3,-0.0 -0.641 63.0 -74.1-106.7 73.9 -1.0 22.8 16.2 11 11 A Q S S+ 0 0 145 -2,-0.8 -1,-0.4 1,-0.0 0, 0.0 0.185 99.3 63.7 59.7 172.1 -3.4 20.4 14.4 12 12 A E - 0 0 157 -3,-0.1 3,-0.1 1,-0.0 -1,-0.0 0.277 54.6-153.9 60.2 164.2 -2.3 17.9 11.8 13 13 A E + 0 0 183 1,-0.5 2,-0.2 -4,-0.0 -1,-0.0 0.519 63.1 0.8-136.4 -54.1 0.0 15.0 12.5 14 14 A E - 0 0 128 2,-0.0 -1,-0.5 0, 0.0 2,-0.1 -0.677 47.9-152.6-131.6-174.3 2.0 13.9 9.5 15 15 A T - 0 0 121 -2,-0.2 2,-1.2 -3,-0.1 -3,-0.0 -0.435 8.7-176.7-167.8 83.3 2.4 14.8 5.8 16 16 A Y + 0 0 60 1,-0.1 3,-0.3 -2,-0.1 -2,-0.0 -0.719 22.5 149.7 -89.8 94.2 3.5 12.1 3.3 17 17 A A + 0 0 81 -2,-1.2 -1,-0.1 1,-0.2 3,-0.0 -0.077 66.7 56.0-114.0 31.5 3.9 13.9 0.0 18 18 A D S S+ 0 0 145 2,-0.1 2,-0.4 0, 0.0 -1,-0.2 0.024 76.4 114.9-149.8 29.2 6.6 11.7 -1.4 19 19 A A - 0 0 16 -3,-0.3 2,-0.0 1,-0.0 -3,-0.0 -0.880 58.8-126.8-109.6 138.2 5.1 8.2 -1.3 20 20 A C >> - 0 0 90 -2,-0.4 4,-2.2 1,-0.1 3,-1.6 -0.258 31.0-103.1 -75.3 166.1 4.3 6.1 -4.3 21 21 A D T 34 S+ 0 0 137 1,-0.3 -1,-0.1 2,-0.2 8,-0.1 0.793 117.9 71.8 -59.4 -28.3 0.9 4.5 -5.0 22 22 A E T 34 S+ 0 0 101 1,-0.2 -1,-0.3 3,-0.0 -3,-0.0 0.815 111.4 29.0 -57.6 -30.8 2.4 1.2 -3.9 23 23 A F T <4 S+ 0 0 19 -3,-1.6 9,-0.8 2,-0.1 -2,-0.2 0.756 106.7 86.2 -98.7 -33.2 2.4 2.6 -0.4 24 24 A L B < S-A 31 0A 39 -4,-2.2 7,-0.2 7,-0.2 5,-0.0 -0.470 86.7-110.4 -72.2 139.1 -0.6 5.0 -0.7 25 25 A D > - 0 0 1 5,-2.7 4,-0.7 -2,-0.2 20,-0.1 -0.411 14.0-136.5 -69.7 142.8 -4.0 3.4 -0.1 26 26 A P T 4 S+ 0 0 63 0, 0.0 -1,-0.1 0, 0.0 19,-0.1 0.770 103.9 20.7 -70.3 -26.2 -6.3 3.1 -3.1 27 27 A I T 4 S+ 0 0 83 3,-0.1 18,-0.1 0, 0.0 -2,-0.0 0.796 131.8 40.0-107.2 -50.6 -9.3 4.4 -1.1 28 28 A M T 4 S- 0 0 97 2,-0.1 3,-0.1 1,-0.1 17,-0.0 0.781 88.3-148.8 -71.6 -27.4 -7.8 6.3 1.8 29 29 A S < + 0 0 88 -4,-0.7 2,-0.2 1,-0.2 -5,-0.1 0.822 59.9 107.6 61.2 31.3 -5.1 7.7 -0.4 30 30 A T S S- 0 0 72 -7,-0.1 -5,-2.7 1,-0.1 -1,-0.2 -0.764 80.3 -60.7-130.5 176.4 -2.8 7.7 2.6 31 31 A L B -A 24 0A 39 -2,-0.2 2,-0.5 -7,-0.2 -7,-0.2 -0.272 49.3-137.4 -59.4 142.0 0.2 5.9 3.9 32 32 A M + 0 0 3 -9,-0.8 -1,-0.1 1,-0.2 50,-0.0 -0.916 26.6 172.8-109.2 122.9 -0.3 2.2 4.5 33 33 A C S S+ 0 0 92 -2,-0.5 -1,-0.2 1,-0.2 49,-0.1 0.828 84.2 23.2 -92.5 -39.8 1.1 0.5 7.6 34 34 A D S S- 0 0 89 2,-0.0 13,-2.3 40,-0.0 2,-0.4 -0.643 77.4-169.7-129.7 75.2 -0.5 -2.9 7.3 35 35 A P E -B 46 0B 2 0, 0.0 40,-3.5 0, 0.0 2,-0.4 -0.524 8.0-160.3 -70.0 119.0 -1.3 -3.5 3.6 36 36 A V E -BC 45 74B 3 9,-3.8 9,-2.1 -2,-0.4 2,-0.7 -0.853 14.6-129.3-105.1 135.7 -3.5 -6.6 3.1 37 37 A V E -BC 44 73B 54 36,-2.8 36,-1.5 -2,-0.4 7,-0.2 -0.732 20.2-137.5 -86.3 116.0 -3.8 -8.4 -0.2 38 38 A L > - 0 0 1 5,-2.3 4,-1.2 -2,-0.7 34,-0.1 -0.598 5.9-156.7 -75.0 120.5 -7.4 -9.0 -1.1 39 39 A P T 4 S+ 0 0 41 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.514 91.2 43.9 -74.4 -4.0 -7.9 -12.6 -2.5 40 40 A S T 4 S+ 0 0 26 3,-0.1 27,-0.0 25,-0.1 -2,-0.0 0.844 127.1 20.6-102.5 -65.9 -11.0 -11.4 -4.3 41 41 A S T 4 S- 0 0 22 2,-0.1 3,-0.1 24,-0.1 -3,-0.0 0.607 93.2-134.6 -81.3 -12.8 -10.3 -8.1 -6.0 42 42 A R < + 0 0 189 -4,-1.2 2,-0.3 1,-0.2 -5,-0.0 0.821 58.6 139.3 62.0 30.7 -6.6 -8.7 -5.8 43 43 A V - 0 0 40 -5,-0.1 -5,-2.3 -7,-0.0 2,-0.6 -0.803 55.2-123.2-108.7 149.9 -6.2 -5.1 -4.6 44 44 A T E +B 37 0B 47 -2,-0.3 2,-0.3 -7,-0.2 -7,-0.2 -0.817 42.1 157.9 -95.4 118.2 -3.8 -3.9 -1.8 45 45 A V E -B 36 0B 1 -9,-2.1 -9,-3.8 -2,-0.6 5,-0.1 -0.967 45.9 -87.0-138.8 154.2 -5.6 -2.1 1.0 46 46 A D E > -B 35 0B 17 -2,-0.3 4,-1.9 -11,-0.3 5,-0.2 -0.238 35.4-121.9 -58.4 144.9 -4.8 -1.2 4.6 47 47 A R H > S+ 0 0 134 -13,-2.3 4,-0.8 1,-0.2 -1,-0.1 0.796 117.2 42.0 -58.6 -28.6 -5.8 -3.9 7.2 48 48 A S H > S+ 0 0 83 2,-0.2 4,-1.6 1,-0.1 -1,-0.2 0.777 106.0 62.1 -88.2 -30.8 -8.0 -1.2 8.8 49 49 A T H > S+ 0 0 19 1,-0.2 4,-0.6 2,-0.2 -2,-0.2 0.855 108.1 44.0 -63.1 -35.6 -9.3 0.2 5.6 50 50 A I H >X S+ 0 0 3 -4,-1.9 4,-1.5 2,-0.2 3,-0.6 0.839 105.1 62.4 -77.8 -35.0 -10.9 -3.1 4.8 51 51 A A H 3< S+ 0 0 30 -4,-0.8 -2,-0.2 1,-0.3 -1,-0.2 0.883 99.3 55.3 -57.6 -40.4 -12.3 -3.6 8.3 52 52 A R H >< S+ 0 0 192 -4,-1.6 3,-0.6 1,-0.2 4,-0.3 0.822 110.3 46.1 -62.8 -31.3 -14.4 -0.5 7.9 53 53 A H H - 0 0 0 5,-1.1 4,-0.5 -2,-0.3 7,-0.0 -0.657 28.4-138.9 -89.9 144.2 -14.9 -6.5 -1.2 61 61 A P T 4 S+ 0 0 43 0, 0.0 -1,-0.1 0, 0.0 -11,-0.0 0.697 104.6 25.2 -72.8 -19.2 -15.3 -2.8 -2.1 62 62 A F T 4 S+ 0 0 102 3,-0.1 -2,-0.0 -19,-0.0 0, 0.0 0.793 132.2 34.1-108.5 -54.1 -14.4 -3.6 -5.7 63 63 A N T 4 S- 0 0 79 2,-0.1 0, 0.0 1,-0.0 0, 0.0 0.831 85.9-151.5 -73.0 -33.3 -15.3 -7.2 -6.3 64 64 A R < + 0 0 209 -4,-0.5 3,-0.0 1,-0.2 -6,-0.0 0.859 51.7 125.8 62.9 36.0 -18.3 -7.0 -4.0 65 65 A S S S- 0 0 46 1,-0.1 -5,-1.1 0, 0.0 -1,-0.2 -0.649 72.4 -53.1-117.7 175.5 -18.0 -10.7 -3.2 66 66 A P B S+D 59 0C 96 0, 0.0 2,-0.3 0, 0.0 -7,-0.2 -0.274 71.9 151.9 -52.3 117.6 -17.7 -12.9 -0.1 67 67 A L + 0 0 3 -9,-1.5 2,-0.3 -2,-0.1 -29,-0.0 -0.994 14.7 166.5-152.6 145.6 -14.7 -11.5 1.9 68 68 A T > - 0 0 56 -2,-0.3 4,-2.0 1,-0.0 3,-0.1 -0.859 51.6 -91.3-147.1-179.6 -13.7 -11.3 5.6 69 69 A M T 4 S+ 0 0 72 -2,-0.3 -18,-0.0 1,-0.2 -1,-0.0 0.811 124.0 54.6 -68.3 -30.3 -10.7 -10.6 7.9 70 70 A D T 4 S+ 0 0 161 1,-0.1 -1,-0.2 3,-0.0 -3,-0.0 0.815 108.2 49.6 -72.7 -31.2 -9.7 -14.2 7.8 71 71 A Q T 4 S+ 0 0 88 -3,-0.1 -2,-0.2 2,-0.1 -1,-0.1 0.964 95.7 77.8 -71.8 -54.8 -9.6 -14.2 4.0 72 72 A I S < S- 0 0 9 -4,-2.0 -34,-0.2 -34,-0.1 -36,-0.0 -0.289 70.7-155.6 -58.8 137.8 -7.5 -11.1 3.5 73 73 A R E -C 37 0B 175 -36,-1.5 -36,-2.8 0, 0.0 2,-0.3 -0.866 23.1 -98.2-118.6 152.5 -3.8 -11.7 4.2 74 74 A P E -C 36 0B 99 0, 0.0 2,-1.7 0, 0.0 -38,-0.3 -0.526 33.1-126.9 -71.4 124.7 -0.9 -9.3 5.2 75 75 A N > + 0 0 34 -40,-3.5 4,-2.8 -2,-0.3 3,-0.4 -0.541 36.4 170.0 -74.2 88.1 1.1 -8.1 2.2 76 76 A T H > S+ 0 0 75 -2,-1.7 4,-2.3 1,-0.2 5,-0.2 0.863 74.4 61.4 -67.3 -36.8 4.6 -9.1 3.5 77 77 A E H 4 S+ 0 0 155 1,-0.2 4,-0.3 -3,-0.2 -1,-0.2 0.817 114.9 34.9 -59.5 -31.2 6.1 -8.3 0.1 78 78 A L H >> S+ 0 0 6 -3,-0.4 4,-1.9 -43,-0.2 3,-0.8 0.866 111.9 58.4 -89.7 -44.1 4.9 -4.7 0.5 79 79 A K H 3X S+ 0 0 74 -4,-2.8 4,-1.4 1,-0.3 -2,-0.2 0.872 104.6 53.4 -53.5 -40.2 5.4 -4.3 4.2 80 80 A E H 3X S+ 0 0 94 -4,-2.3 4,-0.8 1,-0.2 -1,-0.3 0.813 107.4 52.0 -65.8 -30.4 9.1 -5.2 3.8 81 81 A K H <> S+ 0 0 91 -3,-0.8 4,-1.8 -4,-0.3 -1,-0.2 0.842 104.8 55.0 -74.5 -34.8 9.4 -2.4 1.2 82 82 A I H X S+ 0 0 7 -4,-1.9 4,-2.8 1,-0.2 5,-0.2 0.835 104.6 54.3 -67.3 -33.0 7.8 0.2 3.5 83 83 A Q H X S+ 0 0 105 -4,-1.4 4,-0.8 -5,-0.2 -1,-0.2 0.802 108.3 49.7 -70.7 -29.6 10.4 -0.5 6.2 84 84 A R H X S+ 0 0 141 -4,-0.8 4,-1.2 2,-0.2 -2,-0.2 0.867 117.2 39.2 -76.6 -38.6 13.2 0.1 3.6 85 85 A W H X S+ 0 0 64 -4,-1.8 4,-3.9 2,-0.2 5,-0.3 0.929 113.9 52.1 -76.6 -48.5 11.7 3.4 2.5 86 86 A L H < S+ 0 0 52 -4,-2.8 4,-0.5 1,-0.2 -1,-0.2 0.787 117.3 41.9 -58.7 -27.7 10.6 4.7 5.9 87 87 A A H < S+ 0 0 73 -4,-0.8 -1,-0.2 -5,-0.2 -2,-0.2 0.751 118.7 43.9 -90.1 -28.5 14.1 4.0 7.1 88 88 A E H < S+ 0 0 127 -4,-1.2 -2,-0.2 1,-0.2 -3,-0.2 0.837 105.8 60.3 -84.1 -36.7 15.9 5.3 4.0 89 89 A R S >< S+ 0 0 97 -4,-3.9 2,-2.5 1,-0.2 3,-0.7 0.835 88.0 78.2 -60.0 -33.2 13.7 8.5 3.7 90 90 A K T 3 + 0 0 131 -4,-0.5 -1,-0.2 -5,-0.3 -4,-0.0 -0.385 62.6 108.6 -77.1 64.4 14.9 9.5 7.2 91 91 A Q T 3 + 0 0 147 -2,-2.5 -1,-0.2 3,-0.0 -2,-0.1 0.802 47.4 175.2-104.9 -48.1 18.2 10.8 5.9 92 92 A Q < - 0 0 149 -3,-0.7 -2,-0.0 1,-0.1 0, 0.0 0.148 50.7 -82.4 60.2 174.9 18.0 14.5 6.2 93 93 A S S S- 0 0 135 1,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.835 79.9 -85.6 -81.6 -35.6 20.9 16.9 5.4 94 94 A G - 0 0 43 2,-0.0 -2,-0.1 0, 0.0 -1,-0.1 0.163 38.6-102.8 128.3 114.1 22.5 16.5 8.9 95 95 A P - 0 0 118 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.091 28.6-153.8 -51.2 170.5 21.9 18.3 12.2 96 96 A S + 0 0 111 1,-0.1 -2,-0.0 2,-0.1 0, 0.0 -0.738 30.3 154.4-156.8 101.5 24.4 21.0 13.4 97 97 A S 0 0 133 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.768 360.0 360.0 -96.5 -33.5 24.8 21.8 17.1 98 98 A G 0 0 134 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.929 360.0 360.0 -89.0 360.0 28.4 23.2 16.9