==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 28-MAY-04 1WGW . COMPND 2 MOLECULE: 'SIGNAL RECOGINITION PARTICLE 54; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7242.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 68.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 50 50.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 126 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 145.9 17.3 -17.4 -0.1 2 2 A S - 0 0 123 3,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.641 360.0-160.0-178.5 115.6 15.0 -16.3 2.7 3 3 A S + 0 0 131 -2,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.746 57.2 18.6-103.4 151.0 15.2 -17.0 6.4 4 4 A G S S- 0 0 76 -2,-0.3 2,-0.3 1,-0.1 0, 0.0 0.064 73.0-110.5 78.7 166.8 12.3 -16.8 8.8 5 5 A S S S+ 0 0 128 1,-0.0 -1,-0.1 3,-0.0 3,-0.1 -0.841 85.8 63.2-141.9 100.0 8.6 -16.9 8.1 6 6 A S S S- 0 0 134 -2,-0.3 2,-0.3 1,-0.1 -2,-0.1 0.062 95.7 -95.6-177.3 -48.8 6.6 -13.7 8.6 7 7 A G + 0 0 41 3,-0.1 2,-2.1 2,-0.0 -1,-0.1 -0.779 51.5 156.6 155.0-103.9 7.7 -11.0 6.3 8 8 A A S > S+ 0 0 87 -2,-0.3 4,-2.1 1,-0.2 5,-0.2 -0.542 77.5 66.8 81.4 -75.5 10.2 -8.3 7.2 9 9 A D H > S+ 0 0 105 -2,-2.1 4,-1.4 1,-0.2 -1,-0.2 0.781 95.4 66.2 -46.0 -28.7 11.4 -7.6 3.7 10 10 A L H >> S+ 0 0 70 2,-0.2 3,-2.9 1,-0.2 4,-1.4 0.990 104.4 35.8 -56.5 -77.7 7.8 -6.4 3.3 11 11 A G H 3> S+ 0 0 35 1,-0.3 4,-4.0 2,-0.2 -1,-0.2 0.739 114.7 62.7 -48.8 -24.4 7.9 -3.4 5.6 12 12 A R H 3X S+ 0 0 158 -4,-2.1 4,-1.5 2,-0.2 -1,-0.3 0.803 99.0 52.8 -71.7 -30.6 11.5 -3.0 4.3 13 13 A K H X S+ 0 0 3 -4,-1.4 4,-2.3 2,-0.2 3,-0.7 0.884 108.5 67.0 -84.9 -45.1 7.9 0.3 2.1 15 15 A T H 3X S+ 0 0 27 -4,-4.0 4,-3.8 1,-0.3 5,-0.3 0.899 101.2 48.7 -38.8 -60.8 10.3 1.6 4.8 16 16 A S H 3X S+ 0 0 76 -4,-1.5 4,-1.0 2,-0.2 -1,-0.3 0.864 111.3 53.5 -49.3 -40.5 12.7 2.8 2.2 17 17 A A H X< S+ 0 0 6 -3,-0.7 3,-1.9 -4,-0.5 4,-0.4 0.988 113.3 38.4 -58.3 -64.8 9.7 4.4 0.5 18 18 A L H >X S+ 0 0 2 -4,-2.3 3,-1.7 1,-0.3 4,-1.3 0.848 113.4 59.1 -54.6 -35.8 8.6 6.3 3.6 19 19 A R H 3X S+ 0 0 157 -4,-3.8 4,-1.1 -5,-0.4 -1,-0.3 0.735 91.9 68.6 -65.3 -22.9 12.3 6.9 4.3 20 20 A S H - 0 0 62 1,-0.0 4,-1.6 39,-0.0 5,-0.2 -0.902 66.5 -75.7-154.1 178.5 4.3 17.4 -2.3 29 29 A E H > S+ 0 0 106 37,-0.3 4,-3.3 -2,-0.3 5,-0.2 0.886 128.4 55.8 -48.2 -45.5 1.5 15.5 -4.0 30 30 A E H > S+ 0 0 128 2,-0.2 4,-4.6 3,-0.2 -1,-0.2 0.941 104.1 53.3 -52.7 -54.3 4.1 14.2 -6.5 31 31 A V H > S+ 0 0 28 2,-0.2 4,-3.9 1,-0.2 5,-0.5 0.949 113.5 40.4 -44.3 -71.0 6.2 12.8 -3.7 32 32 A L H X S+ 0 0 2 -4,-1.6 4,-3.5 1,-0.3 -1,-0.2 0.912 117.0 51.2 -44.4 -53.3 3.5 10.8 -2.1 33 33 A N H X S+ 0 0 72 -4,-3.3 4,-1.5 -5,-0.2 -1,-0.3 0.925 118.5 38.0 -50.6 -50.6 2.2 9.9 -5.6 34 34 A A H >X S+ 0 0 48 -4,-4.6 3,-1.0 2,-0.2 4,-0.9 0.993 117.1 48.0 -64.3 -64.4 5.7 8.7 -6.5 35 35 A M H >X S+ 0 0 8 -4,-3.9 4,-1.2 1,-0.3 3,-1.0 0.812 106.5 62.5 -45.4 -35.3 6.6 7.2 -3.1 36 36 A L H >X>S+ 0 0 7 -4,-3.5 4,-3.2 -5,-0.5 3,-1.4 0.942 94.3 57.7 -56.8 -51.3 3.3 5.5 -3.4 37 37 A K H <<5S+ 0 0 121 -4,-1.5 4,-0.3 -3,-1.0 -1,-0.3 0.734 109.8 48.1 -51.6 -22.0 4.4 3.6 -6.5 38 38 A E H X>S+ 0 0 11 -4,-1.6 4,-2.0 1,-0.3 3,-1.6 0.910 112.8 48.3 -57.1 -44.8 1.4 -4.4 -1.1 44 44 A L H 3<5S+ 0 0 74 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.838 109.7 52.8 -64.1 -33.7 1.2 -5.7 -4.6 45 45 A E T 3<5S+ 0 0 106 -4,-3.4 -1,-0.3 -5,-0.2 -2,-0.2 0.372 108.1 55.6 -82.2 4.2 4.2 -7.8 -3.8 46 46 A A T <45S- 0 0 37 -3,-1.6 -2,-0.2 -5,-0.3 -1,-0.2 0.860 119.1 -98.1 -98.5 -57.1 2.2 -9.1 -0.8 47 47 A D T <5S+ 0 0 156 -4,-2.0 -3,-0.1 1,-0.2 3,-0.1 0.050 70.9 141.0 158.9 -27.0 -1.0 -10.4 -2.3 48 48 A V < - 0 0 51 -5,-0.8 -1,-0.2 1,-0.1 2,-0.2 -0.010 61.5-101.2 -39.9 142.8 -3.4 -7.6 -1.8 49 49 A N >> - 0 0 88 1,-0.1 4,-2.8 2,-0.0 3,-1.4 -0.486 19.8-127.3 -73.3 140.6 -5.7 -7.1 -4.8 50 50 A I H 3> S+ 0 0 62 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.869 113.2 60.5 -53.5 -39.2 -4.8 -4.3 -7.2 51 51 A K H 34 S+ 0 0 137 2,-0.2 -1,-0.3 1,-0.2 4,-0.3 0.824 110.8 41.5 -57.9 -32.2 -8.4 -3.1 -6.7 52 52 A L H X> S+ 0 0 69 -3,-1.4 3,-2.4 2,-0.2 4,-1.5 0.944 111.8 51.0 -79.2 -54.1 -7.5 -2.8 -3.1 53 53 A V H 3X S+ 0 0 3 -4,-2.8 4,-1.5 1,-0.3 -2,-0.2 0.744 108.9 56.4 -55.0 -22.9 -4.1 -1.3 -3.5 54 54 A K H 3X S+ 0 0 115 -4,-2.0 4,-0.6 -5,-0.3 -1,-0.3 0.698 109.4 44.1 -81.0 -21.6 -5.9 1.1 -5.8 55 55 A Q H <> S+ 0 0 59 -3,-2.4 4,-1.7 -4,-0.3 -2,-0.2 0.557 108.4 59.7 -96.4 -13.1 -8.2 2.0 -2.9 56 56 A L H X S+ 0 0 19 -4,-1.5 4,-2.6 2,-0.2 5,-0.2 0.933 97.7 56.1 -78.7 -51.1 -5.4 2.3 -0.4 57 57 A R H X S+ 0 0 99 -4,-1.5 4,-4.5 2,-0.2 5,-0.3 0.905 114.5 40.8 -45.7 -51.5 -3.4 5.0 -2.2 58 58 A E H X S+ 0 0 99 -4,-0.6 4,-4.4 2,-0.2 5,-0.4 0.968 112.9 51.7 -62.6 -56.4 -6.5 7.2 -2.1 59 59 A N H < S+ 0 0 90 -4,-1.7 4,-0.2 1,-0.2 -1,-0.2 0.778 120.0 40.7 -51.3 -27.3 -7.5 6.2 1.4 60 60 A V H >X S+ 0 0 0 -4,-2.6 3,-1.4 2,-0.2 4,-0.8 0.948 115.9 44.3 -84.5 -62.6 -3.9 7.1 2.2 61 61 A K H >< S+ 0 0 48 -4,-4.5 3,-1.0 1,-0.3 5,-0.3 0.859 116.4 50.8 -49.7 -38.8 -3.4 10.3 0.1 62 62 A S T 3< S+ 0 0 102 -4,-4.4 -1,-0.3 -5,-0.3 -2,-0.2 0.763 99.3 64.5 -70.5 -26.1 -6.8 11.3 1.4 63 63 A A T <4 S+ 0 0 44 -3,-1.4 -1,-0.3 -5,-0.4 -2,-0.2 0.655 111.1 41.7 -70.2 -15.6 -5.6 10.6 4.9 64 64 A I S << S- 0 0 17 -3,-1.0 -3,-0.1 -4,-0.8 2,-0.0 0.087 85.1-124.9-104.9-143.3 -3.1 13.4 4.3 65 65 A D + 0 0 70 -2,-0.1 3,-0.1 10,-0.0 -3,-0.1 -0.367 39.7 151.0-176.0 84.8 -3.5 16.8 2.6 66 66 A L + 0 0 26 -5,-0.3 3,-0.5 1,-0.2 -37,-0.3 0.660 67.4 79.5 -92.5 -21.3 -1.3 17.8 -0.3 67 67 A E S S+ 0 0 152 1,-0.3 2,-0.2 -39,-0.1 -1,-0.2 0.767 117.6 6.1 -56.2 -26.3 -3.9 20.0 -1.8 68 68 A E S S+ 0 0 159 -3,-0.1 2,-0.3 0, 0.0 -1,-0.3 -0.663 78.6 142.4-163.4 99.7 -2.8 22.5 0.8 69 69 A M - 0 0 34 -3,-0.5 3,-0.1 1,-0.2 -4,-0.0 -0.801 26.2-165.1-146.9 99.4 0.1 22.0 3.1 70 70 A A - 0 0 97 -2,-0.3 2,-0.3 1,-0.2 -1,-0.2 0.920 54.5 -74.3 -43.1 -91.6 2.3 24.9 4.1 71 71 A S + 0 0 85 4,-0.0 2,-0.2 0, 0.0 -1,-0.2 -0.886 60.3 140.9-176.0 145.2 5.3 23.1 5.6 72 72 A G >> - 0 0 21 -2,-0.3 3,-1.8 -3,-0.1 4,-0.8 -0.669 54.4-117.3 169.9 133.5 6.4 21.2 8.7 73 73 A L H 3> S+ 0 0 137 1,-0.3 4,-1.4 -2,-0.2 -1,-0.1 0.752 112.5 73.0 -49.7 -24.3 8.4 18.2 9.7 74 74 A N H >>>S+ 0 0 90 1,-0.2 4,-3.5 2,-0.2 3,-0.7 0.930 87.1 59.4 -56.4 -48.8 5.1 17.0 10.9 75 75 A K H <>5S+ 0 0 40 -3,-1.8 4,-1.8 1,-0.3 -1,-0.2 0.913 107.8 44.9 -44.8 -53.1 3.9 16.4 7.4 76 76 A R H 3X5S+ 0 0 50 -4,-0.8 4,-2.0 2,-0.2 -1,-0.3 0.782 118.9 46.1 -62.8 -27.8 6.8 14.0 6.9 77 77 A K H X S+ 0 0 93 -4,-2.6 3,-2.5 2,-0.2 4,-1.0 0.934 105.2 52.8 -80.6 -52.7 -0.7 3.3 10.0 86 86 A E H >X S+ 0 0 17 -4,-3.3 4,-1.4 1,-0.3 3,-0.9 0.855 99.0 66.2 -50.3 -39.0 -2.9 2.5 7.0 87 87 A L H 3< S+ 0 0 58 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.802 98.7 53.8 -53.4 -29.9 -1.0 -0.7 6.7 88 88 A V H <4 S+ 0 0 119 -3,-2.5 -1,-0.3 -5,-0.3 -2,-0.2 0.830 115.0 40.5 -73.5 -33.7 -2.6 -1.6 10.0 89 89 A K H << + 0 0 96 -4,-1.0 -2,-0.2 -3,-0.9 -3,-0.1 0.968 62.0 146.0 -75.8 -81.8 -6.0 -0.9 8.5 90 90 A V S < S- 0 0 66 -4,-1.4 -3,-0.1 1,-0.1 -34,-0.0 0.883 98.1 -37.5 41.2 49.8 -6.0 -2.3 5.0 91 91 A K S S- 0 0 165 -5,-0.1 -1,-0.1 -39,-0.1 -2,-0.0 0.956 84.6-112.0 66.3 91.7 -9.7 -3.1 5.5 92 92 A V - 0 0 59 1,-0.1 -3,-0.1 2,-0.0 -2,-0.0 -0.022 16.5-142.6 -48.0 156.3 -10.1 -4.3 9.1 93 93 A Y S S- 0 0 207 -4,-0.0 -1,-0.1 0, 0.0 -4,-0.0 0.858 70.7 -52.5 -91.1 -44.4 -10.9 -7.9 9.6 94 94 A S S S+ 0 0 87 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.184 98.4 115.2 168.2 45.0 -13.3 -7.6 12.6 95 95 A G S S- 0 0 25 1,-0.1 2,-2.5 0, 0.0 -3,-0.0 0.075 83.0 -29.7-103.0-146.2 -11.7 -5.6 15.3 96 96 A P S S+ 0 0 143 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.453 90.1 139.3 -75.0 72.0 -12.4 -2.2 16.9 97 97 A S - 0 0 64 -2,-2.5 2,-0.4 -5,-0.0 0, 0.0 -0.864 42.0-155.7-118.4 152.6 -13.9 -0.7 13.8 98 98 A S 0 0 133 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.871 360.0 360.0-132.0 98.6 -16.9 1.5 13.3 99 99 A G 0 0 132 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 0.857 360.0 360.0 -87.8 360.0 -18.6 1.4 9.9