==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WH5 . COMPND 2 MOLECULE: ZF-HD HOMEOBOX FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR D.KANENO,N.TOCHIO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6970.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-123.3 -15.8 -12.9 24.5 2 2 A S + 0 0 107 4,-0.1 4,-0.1 1,-0.0 5,-0.0 0.821 360.0 107.9 62.8 113.9 -17.3 -12.8 21.0 3 3 A S S S+ 0 0 123 2,-0.6 4,-0.0 3,-0.0 3,-0.0 0.017 71.1 50.0-174.9 -58.1 -20.8 -11.4 20.8 4 4 A G S S+ 0 0 82 1,-0.1 2,-0.3 2,-0.1 0, 0.0 0.996 114.7 34.5 -62.8 -67.9 -20.9 -7.9 19.3 5 5 A S S S- 0 0 105 1,-0.1 -2,-0.6 0, 0.0 3,-0.1 -0.686 91.3-113.3 -92.9 144.9 -18.8 -8.5 16.1 6 6 A S - 0 0 115 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 -0.312 49.6 -74.7 -72.5 158.3 -18.9 -11.9 14.3 7 7 A G - 0 0 49 1,-0.2 -1,-0.2 -4,-0.0 0, 0.0 -0.373 39.7-150.0 -57.8 114.2 -15.9 -14.1 14.2 8 8 A S S S+ 0 0 132 -2,-0.3 2,-0.5 -3,-0.1 3,-0.4 0.946 85.2 57.5 -49.3 -58.6 -13.5 -12.5 11.7 9 9 A S + 0 0 123 1,-0.2 3,-0.1 -3,-0.0 -1,-0.1 -0.674 68.8 105.0 -81.1 121.9 -12.1 -15.9 10.7 10 10 A A S S+ 0 0 93 -2,-0.5 2,-0.3 1,-0.4 -1,-0.2 0.226 75.2 26.6-156.1 -61.0 -14.8 -18.2 9.4 11 11 A E - 0 0 172 -3,-0.4 -1,-0.4 1,-0.2 0, 0.0 -0.912 50.2-160.1-121.1 147.6 -14.7 -18.6 5.6 12 12 A A + 0 0 100 -2,-0.3 -1,-0.2 -3,-0.1 0, 0.0 0.940 68.2 90.7 -86.1 -62.2 -11.8 -18.2 3.1 13 13 A G + 0 0 67 1,-0.1 2,-0.1 2,-0.0 -2,-0.1 -0.111 59.7 153.8 -40.4 112.8 -13.6 -17.6 -0.1 14 14 A G + 0 0 77 2,-0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.388 23.2 165.3-125.9-157.1 -14.0 -13.9 -0.3 15 15 A G - 0 0 78 -2,-0.1 2,-0.6 1,-0.0 3,-0.1 0.287 9.2-173.2 134.0 95.5 -14.3 -11.1 -2.9 16 16 A I - 0 0 130 1,-0.2 47,-0.1 0, 0.0 -2,-0.0 -0.935 59.9 -44.8-116.5 108.8 -15.4 -7.6 -2.1 17 17 A R S S- 0 0 185 -2,-0.6 -1,-0.2 2,-0.1 2,-0.2 0.254 75.4 -86.4 55.6 169.9 -15.9 -5.4 -5.2 18 18 A K - 0 0 181 1,-0.1 2,-0.3 -3,-0.1 46,-0.1 -0.676 63.1 -59.0-108.9 164.4 -13.5 -5.3 -8.1 19 19 A R - 0 0 129 -2,-0.2 3,-0.2 44,-0.1 -1,-0.1 -0.176 67.6-156.7 -44.2 97.0 -10.3 -3.3 -8.7 20 20 A H - 0 0 115 -2,-0.3 2,-1.1 1,-0.2 -1,-0.0 0.035 43.7 -50.6 -68.7-176.3 -11.9 0.1 -8.4 21 21 A R S S- 0 0 240 2,-0.1 2,-0.2 1,-0.0 -1,-0.2 -0.454 72.8-176.4 -63.2 98.1 -10.5 3.3 -10.0 22 22 A T - 0 0 42 -2,-1.1 2,-0.1 -3,-0.2 38,-0.0 -0.631 22.6-166.1 -98.4 157.8 -6.9 3.1 -8.6 23 23 A K - 0 0 192 -2,-0.2 2,-0.5 2,-0.0 5,-0.1 -0.540 10.1-173.8-143.5 70.6 -4.2 5.6 -9.1 24 24 A F - 0 0 43 4,-0.1 2,-0.1 -2,-0.1 -2,-0.0 -0.572 13.2-156.7 -72.2 116.5 -0.9 4.0 -8.1 25 25 A T > - 0 0 78 -2,-0.5 4,-4.3 1,-0.1 5,-0.3 -0.374 40.8 -83.8 -88.7 170.1 1.8 6.7 -8.2 26 26 A A H > S+ 0 0 65 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.821 134.0 50.9 -39.4 -38.1 5.6 6.2 -8.6 27 27 A E H > S+ 0 0 120 2,-0.2 4,-4.6 3,-0.2 -1,-0.2 0.998 115.8 35.4 -64.6 -68.4 5.4 5.6 -4.9 28 28 A Q H > S+ 0 0 27 2,-0.2 4,-3.0 1,-0.2 5,-0.3 0.897 121.2 51.3 -52.4 -45.2 2.7 3.1 -4.7 29 29 A K H X S+ 0 0 92 -4,-4.3 4,-3.0 2,-0.2 -2,-0.2 0.981 117.5 35.9 -55.9 -63.8 3.9 1.6 -8.0 30 30 A E H X S+ 0 0 137 -4,-2.8 4,-3.7 -5,-0.3 5,-0.3 0.905 114.7 58.9 -56.5 -45.2 7.5 1.3 -6.9 31 31 A R H X S+ 0 0 97 -4,-4.6 4,-1.7 -5,-0.3 -1,-0.2 0.923 112.4 38.6 -49.3 -52.4 6.3 0.4 -3.4 32 32 A M H X S+ 0 0 0 -4,-3.0 4,-4.7 2,-0.2 5,-0.3 0.899 114.0 55.2 -66.2 -42.9 4.4 -2.6 -4.7 33 33 A L H X S+ 0 0 34 -4,-3.0 4,-2.7 -5,-0.3 -2,-0.2 0.918 109.8 46.5 -55.6 -46.8 7.1 -3.4 -7.2 34 34 A A H < S+ 0 0 59 -4,-3.7 -1,-0.2 2,-0.2 -2,-0.2 0.852 116.5 46.3 -63.9 -35.4 9.6 -3.6 -4.4 35 35 A L H >X>S+ 0 0 8 -4,-1.7 4,-4.2 -5,-0.3 3,-1.9 0.948 111.1 49.8 -71.1 -51.3 7.2 -5.7 -2.5 36 36 A A H 3X>S+ 0 0 0 -4,-4.7 4,-2.7 1,-0.3 5,-2.0 0.892 112.0 49.2 -53.6 -42.9 6.4 -8.0 -5.4 37 37 A E H 3<5S+ 0 0 124 -4,-2.7 -1,-0.3 -5,-0.3 -2,-0.2 0.554 117.5 44.1 -73.7 -7.8 10.1 -8.4 -5.9 38 38 A R H <45S+ 0 0 196 -3,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.826 125.9 27.0-100.6 -48.3 10.2 -9.1 -2.1 39 39 A I H <5S- 0 0 15 -4,-4.2 -3,-0.2 3,-0.1 -2,-0.2 0.801 116.4-105.6 -83.8 -33.1 7.3 -11.4 -1.6 40 40 A G T << - 0 0 39 -4,-2.7 -3,-0.2 -5,-0.6 -4,-0.2 0.763 57.7 -70.6 108.0 43.9 7.4 -12.7 -5.2 41 41 A W S - 0 0 105 -2,-0.4 4,-0.8 1,-0.0 7,-0.2 -0.887 49.7-105.3-140.8 170.1 0.8 -15.8 1.5 45 45 A R T 4 S+ 0 0 202 -2,-0.3 4,-0.3 1,-0.2 -2,-0.0 0.511 121.3 52.8 -74.4 -4.6 -0.4 -16.1 5.1 46 46 A Q T >4 S+ 0 0 154 2,-0.1 3,-0.6 1,-0.1 4,-0.3 0.829 106.5 46.7 -95.9 -43.5 3.2 -15.4 6.1 47 47 A D T >> S+ 0 0 34 1,-0.2 4,-4.0 2,-0.2 3,-1.5 0.589 88.1 96.9 -74.3 -10.5 3.7 -12.2 4.1 48 48 A D H 3X>S+ 0 0 40 -4,-0.8 4,-3.2 1,-0.3 5,-0.7 0.918 77.4 55.1 -41.1 -61.3 0.4 -11.1 5.5 49 49 A E H <>5S+ 0 0 148 -3,-0.6 4,-1.3 -4,-0.3 -1,-0.3 0.821 117.2 38.6 -42.6 -37.3 2.1 -9.2 8.3 50 50 A V H <>5S+ 0 0 38 -3,-1.5 4,-4.5 -4,-0.3 -2,-0.3 0.908 116.4 50.4 -80.7 -47.1 3.9 -7.4 5.4 51 51 A I H X5S+ 0 0 0 -4,-4.0 4,-1.4 2,-0.2 -2,-0.2 0.971 118.7 37.1 -53.8 -61.6 1.0 -7.3 3.1 52 52 A Q H <5S+ 0 0 90 -4,-3.2 4,-0.4 1,-0.2 3,-0.4 0.918 119.4 50.3 -57.1 -47.1 -1.3 -5.7 5.7 53 53 A R H >X> - 0 0 72 0, 0.0 4,-3.1 0, 0.0 3,-1.0 -0.488 17.9-126.5 -75.0 141.6 -6.2 -2.5 -0.4 62 62 A R H 3> S+ 0 0 138 1,-0.3 4,-2.0 2,-0.3 5,-0.1 0.936 112.2 56.3 -49.2 -56.1 -5.0 -6.1 -0.2 63 63 A Q H 3> S+ 0 0 55 1,-0.3 4,-2.0 2,-0.2 -1,-0.3 0.806 113.5 43.4 -46.6 -33.0 -7.3 -7.2 -2.9 64 64 A V H <> S+ 0 0 5 -3,-1.0 4,-3.7 2,-0.2 5,-0.3 0.917 106.9 56.5 -79.1 -48.1 -5.7 -4.5 -5.0 65 65 A L H X S+ 0 0 0 -4,-3.1 4,-0.8 2,-0.2 -2,-0.2 0.725 113.9 46.7 -55.5 -21.0 -2.1 -5.4 -3.9 66 66 A K H X S+ 0 0 123 -4,-2.0 4,-1.3 -5,-0.3 3,-0.4 0.955 117.4 34.7 -83.4 -72.1 -3.1 -8.8 -5.3 67 67 A V H >X S+ 0 0 35 -4,-2.0 4,-4.1 1,-0.2 3,-0.6 0.893 111.0 67.6 -49.1 -45.2 -4.7 -8.1 -8.6 68 68 A W H 3X S+ 0 0 1 -4,-3.7 4,-2.4 1,-0.3 -1,-0.2 0.914 97.0 51.6 -38.8 -63.1 -2.2 -5.2 -9.0 69 69 A L H 3X S+ 0 0 4 -4,-0.8 4,-3.1 -3,-0.4 -1,-0.3 0.873 115.9 42.2 -42.0 -46.3 0.6 -7.7 -9.3 70 70 A H H << S+ 0 0 121 -4,-1.3 -1,-0.3 -3,-0.6 -2,-0.3 0.894 112.0 52.9 -69.1 -41.5 -1.4 -9.4 -11.9 71 71 A N H < S+ 0 0 70 -4,-4.1 -2,-0.2 -5,-0.2 -1,-0.2 0.698 123.4 32.4 -66.3 -18.8 -2.4 -6.1 -13.5 72 72 A N H < S+ 0 0 22 -4,-2.4 -2,-0.2 -5,-0.4 -3,-0.2 0.855 113.5 54.8 -98.8 -73.0 1.3 -5.4 -13.5 73 73 A K S < S+ 0 0 81 -4,-3.1 5,-0.0 -5,-0.1 -32,-0.0 0.083 88.2 56.2 -54.2 174.8 3.1 -8.7 -14.1 74 74 A H S S- 0 0 162 2,-0.1 -1,-0.1 -3,-0.0 -4,-0.0 0.995 128.6 -16.8 58.5 72.2 2.3 -10.9 -17.1 75 75 A S S S+ 0 0 123 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.738 104.4 88.6 69.3 120.1 2.9 -8.4 -19.8 76 76 A G S S- 0 0 51 2,-0.0 2,-2.0 0, 0.0 -1,-0.1 -0.984 84.4 -10.9 159.7-157.8 3.0 -4.7 -18.9 77 77 A P S S+ 0 0 106 0, 0.0 2,-0.5 0, 0.0 -4,-0.0 -0.518 70.8 173.3 -75.0 80.7 5.4 -1.9 -17.8 78 78 A S + 0 0 112 -2,-2.0 -2,-0.0 1,-0.2 -5,-0.0 -0.796 17.6 144.8 -95.3 130.4 8.4 -4.2 -17.0 79 79 A S 0 0 116 -2,-0.5 -1,-0.2 0, 0.0 0, 0.0 0.624 360.0 360.0-125.5 -55.9 11.7 -2.5 -16.1 80 80 A G 0 0 86 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.206 360.0 360.0 -90.9 360.0 13.5 -4.7 -13.6