==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-MAY-04 1WH6 . COMPND 2 MOLECULE: HOMEOBOX PROTEIN CUX-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.NAMEKI,N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7976.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 58.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 39.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 117 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-113.4 2.1 -17.7 -24.0 2 2 A S + 0 0 128 1,-0.1 2,-0.2 2,-0.1 0, 0.0 -0.540 360.0 161.8 -63.6 117.9 2.5 -14.2 -22.5 3 3 A S + 0 0 111 -2,-0.4 -1,-0.1 2,-0.0 2,-0.0 -0.713 51.2 24.4-153.6 83.7 -0.8 -13.8 -20.7 4 4 A G + 0 0 56 -2,-0.2 2,-2.4 3,-0.1 -2,-0.1 -0.472 56.6 166.7 162.5 -71.1 -1.4 -11.1 -17.9 5 5 A S S S+ 0 0 119 1,-0.3 -2,-0.0 3,-0.1 -3,-0.0 -0.346 70.7 66.7 75.7 -59.2 1.1 -8.3 -18.5 6 6 A S S S- 0 0 67 -2,-2.4 -1,-0.3 76,-0.0 76,-0.2 0.738 102.8-135.9 -60.8 -20.5 -0.5 -5.7 -16.1 7 7 A G - 0 0 21 74,-0.1 5,-0.1 1,-0.1 75,-0.1 0.990 17.1-146.4 63.1 68.1 0.7 -8.2 -13.5 8 8 A Q > - 0 0 146 1,-0.1 3,-2.2 3,-0.1 4,-0.3 -0.187 33.8 -91.6 -55.7 159.5 -2.3 -8.4 -11.1 9 9 A Y T 3> S+ 0 0 123 1,-0.3 4,-1.3 2,-0.2 3,-0.2 0.593 113.5 86.2 -56.7 -19.0 -1.6 -9.1 -7.4 10 10 A E H 3> S+ 0 0 123 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.777 86.2 56.4 -53.8 -29.6 -1.8 -12.8 -7.9 11 11 A L H X> S+ 0 0 98 -3,-2.2 4,-1.9 1,-0.2 3,-1.2 0.972 110.0 44.4 -59.6 -52.8 1.9 -12.7 -8.9 12 12 A Y H 34 S+ 0 0 45 -4,-0.3 -2,-0.2 1,-0.3 -1,-0.2 0.565 93.4 79.0 -74.3 -14.1 2.7 -11.0 -5.5 13 13 A M H 3< S+ 0 0 74 -4,-1.3 -1,-0.3 1,-0.1 -2,-0.2 0.879 114.9 19.3 -58.8 -34.0 0.5 -13.5 -3.6 14 14 A Y H << S+ 0 0 183 -3,-1.2 -2,-0.2 -4,-0.5 -3,-0.1 0.896 117.2 65.6 -97.8 -58.0 3.5 -15.9 -3.9 15 15 A R S < S- 0 0 184 -4,-1.9 2,-0.2 1,-0.1 0, 0.0 -0.220 72.9-122.1 -81.6 159.3 6.6 -13.9 -4.8 16 16 A E - 0 0 127 -2,-0.0 2,-0.3 -3,-0.0 -1,-0.1 -0.548 20.0-166.4 -98.4 164.1 8.6 -11.3 -2.7 17 17 A V - 0 0 46 -2,-0.2 2,-1.0 -5,-0.1 45,-0.4 -0.894 34.4-103.9-141.1 159.4 9.5 -7.7 -3.4 18 18 A D > - 0 0 128 -2,-0.3 4,-2.8 1,-0.2 3,-0.3 -0.826 31.5-166.7 -88.6 99.1 11.9 -5.1 -1.8 19 19 A T H > S+ 0 0 5 -2,-1.0 4,-2.0 1,-0.2 -1,-0.2 0.790 85.9 55.3 -62.2 -23.9 9.4 -3.0 0.2 20 20 A L H > S+ 0 0 84 2,-0.2 4,-1.4 1,-0.1 -1,-0.2 0.904 113.0 39.2 -75.6 -40.7 12.1 -0.3 0.7 21 21 A E H > S+ 0 0 78 -3,-0.3 4,-3.1 2,-0.2 5,-0.2 0.852 114.0 57.4 -75.3 -34.3 12.8 0.1 -3.1 22 22 A L H X S+ 0 0 10 -4,-2.8 4,-2.7 2,-0.2 -2,-0.2 0.960 108.1 44.3 -55.9 -57.2 9.1 -0.2 -3.8 23 23 A T H X S+ 0 0 0 -4,-2.0 4,-3.1 2,-0.2 -1,-0.2 0.883 114.2 53.5 -58.7 -38.5 8.2 2.7 -1.5 24 24 A R H X S+ 0 0 138 -4,-1.4 4,-2.7 2,-0.2 -2,-0.2 0.972 108.9 45.9 -54.1 -61.6 11.2 4.5 -3.2 25 25 A Q H X S+ 0 0 90 -4,-3.1 4,-2.8 1,-0.2 5,-0.2 0.895 116.1 48.2 -49.2 -48.3 9.9 3.9 -6.8 26 26 A V H X S+ 0 0 0 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.952 110.6 49.1 -58.4 -59.1 6.5 5.0 -5.6 27 27 A K H X S+ 0 0 61 -4,-3.1 4,-2.5 1,-0.2 -2,-0.2 0.879 114.8 46.7 -51.2 -43.1 7.7 8.2 -3.8 28 28 A E H X S+ 0 0 109 -4,-2.7 4,-3.0 2,-0.2 -2,-0.2 0.955 111.8 48.1 -64.9 -54.0 9.8 9.1 -7.0 29 29 A K H < S+ 0 0 77 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.847 115.9 46.5 -58.1 -36.4 7.0 8.5 -9.5 30 30 A L H ><>S+ 0 0 0 -4,-2.5 5,-2.5 -5,-0.2 3,-1.5 0.943 113.7 47.0 -66.5 -51.7 4.6 10.6 -7.3 31 31 A A H ><5S+ 0 0 69 -4,-2.5 3,-1.6 1,-0.3 -2,-0.2 0.893 105.3 60.1 -60.6 -40.8 7.2 13.4 -6.8 32 32 A K T 3<5S+ 0 0 183 -4,-3.0 -1,-0.3 1,-0.3 -2,-0.2 0.476 114.7 37.4 -61.4 -9.1 7.9 13.5 -10.6 33 33 A N T < 5S- 0 0 119 -3,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.273 113.1-114.1-125.8 2.2 4.2 14.3 -11.1 34 34 A G T < 5 + 0 0 68 -3,-1.6 2,-0.6 -4,-0.3 -3,-0.2 0.864 59.6 159.0 60.0 35.8 3.7 16.6 -8.0 35 35 A I < - 0 0 57 -5,-2.5 2,-0.5 -6,-0.1 -1,-0.2 -0.846 45.2-126.2 -89.6 124.1 1.3 14.1 -6.4 36 36 A C > - 0 0 71 -2,-0.6 4,-2.2 1,-0.2 3,-0.3 -0.585 13.8-144.5 -62.4 115.4 0.9 14.5 -2.6 37 37 A Q H > S+ 0 0 82 -2,-0.5 4,-2.5 1,-0.2 -1,-0.2 0.782 97.5 63.6 -58.1 -25.3 1.8 11.0 -1.3 38 38 A R H > S+ 0 0 101 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.963 105.7 39.9 -58.9 -58.9 -0.9 11.7 1.3 39 39 A I H > S+ 0 0 45 -3,-0.3 4,-2.8 2,-0.2 5,-0.5 0.870 113.9 55.9 -65.6 -37.1 -3.8 12.0 -1.1 40 40 A F H X>S+ 0 0 4 -4,-2.2 5,-1.7 2,-0.2 4,-1.2 0.959 111.4 44.2 -53.5 -51.1 -2.3 9.1 -3.1 41 41 A G H <>S+ 0 0 0 -4,-2.5 6,-2.1 3,-0.2 5,-2.1 0.910 115.1 48.7 -60.1 -44.0 -2.5 7.0 0.2 42 42 A E H <5S+ 0 0 70 -4,-2.5 -2,-0.2 4,-0.3 -1,-0.2 0.906 127.8 20.1 -62.5 -49.5 -6.0 8.2 1.0 43 43 A K H <5S+ 0 0 114 -4,-2.8 -3,-0.2 -5,-0.1 -2,-0.2 0.949 133.1 33.4 -90.5 -61.6 -7.6 7.5 -2.4 44 44 A V T <5S+ 0 0 44 -4,-1.2 -3,-0.2 -5,-0.5 -4,-0.1 0.971 132.4 27.9 -64.4 -62.0 -5.4 5.0 -4.2 45 45 A L T - 0 0 77 -2,-0.2 4,-2.5 1,-0.1 5,-0.3 -0.287 40.7-114.1 -62.0 149.7 -5.2 7.0 6.8 49 49 A Q H > S+ 0 0 109 1,-0.2 4,-0.6 2,-0.2 -1,-0.1 0.768 116.2 39.5 -62.2 -32.0 -3.0 10.0 6.1 50 50 A G H > S+ 0 0 39 2,-0.2 4,-2.7 3,-0.1 5,-0.3 0.885 111.5 56.7 -84.6 -41.5 -0.6 9.2 9.0 51 51 A S H > S+ 0 0 59 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.909 110.5 44.5 -55.7 -48.0 -0.6 5.4 8.5 52 52 A V H X S+ 0 0 2 -4,-2.5 4,-2.7 2,-0.2 -1,-0.2 0.819 110.4 56.0 -66.5 -32.1 0.6 5.9 4.9 53 53 A S H X S+ 0 0 72 -4,-0.6 4,-2.2 -5,-0.3 5,-0.3 0.972 109.6 44.6 -62.6 -53.9 3.2 8.5 6.0 54 54 A D H X S+ 0 0 78 -4,-2.7 4,-2.5 1,-0.2 -2,-0.2 0.850 114.0 54.2 -56.3 -37.0 4.7 5.9 8.5 55 55 A M H < S+ 0 0 37 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.979 112.3 38.8 -61.1 -62.3 4.5 3.4 5.6 56 56 A L H < S+ 0 0 8 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.753 122.1 44.9 -64.3 -29.3 6.4 5.3 3.0 57 57 A S H < S+ 0 0 98 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.924 134.8 7.0 -78.6 -49.0 9.0 6.7 5.6 58 58 A R S < S- 0 0 179 -4,-2.5 -1,-0.2 -5,-0.3 -2,-0.2 -0.647 80.2-179.4-140.2 71.9 9.7 3.4 7.5 59 59 A P - 0 0 20 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.088 25.7-119.5 -64.7 171.6 8.1 0.4 5.9 60 60 A K - 0 0 133 1,-0.1 2,-0.1 -41,-0.1 5,-0.0 -0.795 37.2 -95.4-102.3 158.8 8.3 -3.2 7.3 61 61 A P >> - 0 0 67 0, 0.0 3,-1.8 0, 0.0 4,-1.2 -0.354 34.2-109.9 -68.2 158.2 9.9 -6.1 5.2 62 62 A W T 34 S+ 0 0 5 -45,-0.4 3,-0.4 1,-0.3 -44,-0.1 0.867 118.5 63.3 -56.8 -36.2 7.6 -8.3 3.1 63 63 A S T 34 S+ 0 0 83 1,-0.2 -1,-0.3 3,-0.0 -47,-0.0 0.698 104.6 46.2 -61.9 -25.7 8.3 -11.2 5.5 64 64 A K T <4 S+ 0 0 143 -3,-1.8 2,-0.4 2,-0.1 -1,-0.2 0.780 94.9 89.1 -82.7 -34.1 6.7 -9.2 8.4 65 65 A L < - 0 0 22 -4,-1.2 2,-0.1 -3,-0.4 5,-0.0 -0.566 64.7-154.9 -75.6 123.4 3.6 -8.2 6.4 66 66 A T >> - 0 0 93 -2,-0.4 4,-2.3 1,-0.0 3,-0.7 -0.316 43.9 -84.3 -77.8 177.6 0.7 -10.6 6.6 67 67 A Q H 3> S+ 0 0 142 1,-0.3 4,-1.3 2,-0.2 3,-0.1 0.903 134.8 45.6 -52.8 -44.6 -1.9 -10.7 3.7 68 68 A K H 34 S+ 0 0 171 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.757 114.6 49.5 -73.2 -21.2 -3.9 -7.8 5.2 69 69 A G H <> S+ 0 0 24 -3,-0.7 4,-0.5 1,-0.1 -2,-0.2 0.749 108.9 52.2 -82.2 -27.9 -0.6 -5.9 5.8 70 70 A R H X S+ 0 0 49 -4,-2.3 4,-3.0 1,-0.2 5,-0.2 0.739 86.1 88.4 -78.7 -25.5 0.6 -6.5 2.2 71 71 A E H X S+ 0 0 91 -4,-1.3 4,-2.0 1,-0.2 -1,-0.2 0.837 91.8 40.8 -42.5 -53.0 -2.7 -5.1 0.7 72 72 A P H > S+ 0 0 10 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.922 116.2 50.5 -67.2 -40.3 -1.5 -1.4 0.6 73 73 A F H X S+ 0 0 3 -4,-0.5 4,-2.6 2,-0.2 -2,-0.2 0.926 109.0 52.5 -62.1 -41.5 2.0 -2.5 -0.6 74 74 A I H X S+ 0 0 9 -4,-3.0 4,-2.5 2,-0.2 -1,-0.2 0.914 109.3 48.5 -56.2 -51.0 0.4 -4.6 -3.4 75 75 A R H X S+ 0 0 96 -4,-2.0 4,-2.8 -5,-0.2 -1,-0.2 0.887 110.9 52.0 -62.5 -35.4 -1.7 -1.6 -4.5 76 76 A M H X S+ 0 0 0 -4,-2.3 4,-1.4 2,-0.2 -2,-0.2 0.929 110.4 48.0 -57.3 -51.0 1.6 0.4 -4.4 77 77 A Q H X S+ 0 0 18 -4,-2.6 4,-0.8 2,-0.2 -2,-0.2 0.860 115.4 44.7 -60.9 -43.0 3.3 -2.3 -6.7 78 78 A L H >X>S+ 0 0 16 -4,-2.5 4,-2.7 1,-0.2 3,-1.3 0.980 106.9 57.8 -65.3 -55.6 0.4 -2.3 -9.1 79 79 A W H 3X5S+ 0 0 28 -4,-2.8 4,-0.9 1,-0.3 -2,-0.2 0.750 97.2 64.8 -50.6 -32.3 0.1 1.5 -9.2 80 80 A L H 3<5S+ 0 0 36 -4,-1.4 -1,-0.3 2,-0.1 -2,-0.2 0.916 126.8 7.6 -53.3 -52.8 3.7 1.7 -10.4 81 81 A S H <<5S+ 0 0 99 -3,-1.3 -2,-0.2 -4,-0.8 -3,-0.1 0.865 135.2 47.7 -95.9 -53.7 2.9 -0.1 -13.7 82 82 A D H ><5S- 0 0 63 -4,-2.7 3,-0.6 -76,-0.2 -3,-0.2 0.794 76.8-161.3 -61.4 -36.0 -0.9 -0.4 -13.7 83 83 A Q T 3<< - 0 0 130 -4,-0.9 3,-0.2 -5,-0.6 -4,-0.2 0.239 40.7-111.5 59.7 -3.5 -1.5 3.2 -12.8 84 84 A L T 3 - 0 0 65 1,-0.2 2,-2.1 -6,-0.1 3,-0.4 0.957 37.8-159.9 39.9 70.9 -5.0 2.1 -11.8 85 85 A G < + 0 0 76 -3,-0.6 -1,-0.2 1,-0.2 3,-0.1 -0.378 50.3 119.5 -83.7 60.8 -6.8 3.9 -14.6 86 86 A Q S S- 0 0 193 -2,-2.1 2,-0.3 1,-0.3 -1,-0.2 0.939 83.7 -31.2 -65.5 -75.9 -10.3 4.0 -13.2 87 87 A A - 0 0 86 -3,-0.4 2,-0.3 3,-0.0 -1,-0.3 -0.994 51.9-177.3-159.0 135.3 -10.7 7.8 -13.1 88 88 A V + 0 0 157 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.968 47.7 86.0-134.0 149.5 -8.7 11.0 -12.5 89 89 A G + 0 0 78 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.564 59.9 95.5 139.6 20.7 -9.9 14.6 -12.4 90 90 A Q - 0 0 143 -3,-0.1 -1,-0.1 2,-0.0 -3,-0.0 -0.859 42.5-169.7-142.6 106.6 -11.1 15.6 -8.9 91 91 A Q - 0 0 170 -2,-0.3 2,-1.6 1,-0.1 0, 0.0 -0.507 45.1 -93.3 -72.1 158.5 -9.1 17.4 -6.2 92 92 A P - 0 0 61 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.591 39.9-153.7 -73.7 85.7 -10.5 17.6 -2.6 93 93 A G + 0 0 76 -2,-1.6 2,-0.2 2,-0.0 -3,-0.0 -0.558 59.2 80.3 -56.0 126.3 -12.2 21.0 -2.8 94 94 A A + 0 0 89 -2,-0.2 2,-0.2 2,-0.0 0, 0.0 -0.590 46.9 170.9 140.4 160.3 -12.1 22.1 0.9 95 95 A S - 0 0 123 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.907 12.0-157.0-173.4 173.8 -9.5 23.7 3.2 96 96 A S - 0 0 128 -2,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.939 1.8-162.0-153.3 152.8 -9.1 25.3 6.7 97 97 A G - 0 0 60 -2,-0.3 2,-0.1 1,-0.1 -2,-0.0 -0.837 37.7 -93.2-118.2 164.1 -6.8 27.7 8.4 98 98 A P - 0 0 137 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.329 40.5-174.4 -69.6 160.5 -6.4 28.1 12.2 99 99 A S + 0 0 98 -2,-0.1 0, 0.0 1,-0.0 0, 0.0 -0.956 27.9 171.8-151.3 156.0 -8.3 30.7 14.2 100 100 A S 0 0 134 1,-2.3 -1,-0.0 -2,-0.3 0, 0.0 -0.040 360.0 360.0-134.6 15.3 -8.3 31.9 17.8 101 101 A G 0 0 100 0, 0.0 -1,-2.3 0, 0.0 0, 0.0 -0.802 360.0 360.0 97.3 360.0 -10.6 34.6 16.9