==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WH7 . COMPND 2 MOLECULE: ZF-HD HOMEOBOX FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR D.KANENO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7403.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 38 47.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 35.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.6 16.5 -25.9 24.9 2 2 A S + 0 0 129 1,-0.4 0, 0.0 0, 0.0 0, 0.0 0.151 360.0 96.1-163.8 -58.5 13.5 -24.4 23.2 3 3 A S + 0 0 129 1,-0.1 -1,-0.4 3,-0.0 2,-0.2 -0.243 43.7 172.1 -52.8 132.5 14.3 -22.3 20.2 4 4 A G - 0 0 61 1,-0.5 -1,-0.1 -3,-0.1 0, 0.0 -0.681 54.1 -44.4-150.8 89.7 14.0 -24.4 17.0 5 5 A S + 0 0 127 -2,-0.2 -1,-0.5 1,-0.1 2,-0.3 0.520 64.5 178.0 61.3 143.8 14.3 -22.7 13.7 6 6 A S + 0 0 128 -3,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.913 36.5 24.2-174.6 148.7 12.6 -19.4 13.0 7 7 A G + 0 0 63 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.681 46.6 136.7 94.6-147.4 12.2 -16.8 10.3 8 8 A S + 0 0 125 -2,-0.3 -1,-0.2 1,-0.2 0, 0.0 0.951 24.9 175.0 61.9 94.1 12.7 -17.4 6.6 9 9 A N - 0 0 151 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.872 17.6-152.5-136.1 100.1 9.9 -15.7 4.7 10 10 A P + 0 0 120 0, 0.0 2,-0.1 0, 0.0 0, 0.0 -0.557 33.7 143.1 -75.0 130.6 10.0 -15.8 0.9 11 11 A S + 0 0 98 -2,-0.3 2,-0.1 1,-0.1 14,-0.1 -0.474 27.6 95.3-170.7 89.3 8.3 -12.9 -0.8 12 12 A S + 0 0 121 -2,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.494 37.3 127.3 177.1 106.6 9.8 -11.3 -3.9 13 13 A S + 0 0 127 10,-0.2 2,-0.1 -2,-0.1 10,-0.1 -0.958 8.3 137.7-157.8 169.6 8.9 -12.1 -7.5 14 14 A G - 0 0 77 -2,-0.3 2,-0.5 8,-0.1 8,-0.0 -0.414 28.9-143.6 148.1 136.1 7.8 -10.5 -10.8 15 15 A G - 0 0 84 -2,-0.1 2,-0.2 0, 0.0 -2,-0.0 -0.976 18.0-171.4-126.9 119.2 8.6 -10.7 -14.5 16 16 A T + 0 0 131 -2,-0.5 4,-0.1 1,-0.1 -2,-0.0 -0.647 27.7 132.8-104.9 163.0 8.7 -7.7 -16.8 17 17 A T S S- 0 0 129 2,-0.3 -1,-0.1 -2,-0.2 0, 0.0 0.089 85.9 -21.9-167.6 -61.1 8.9 -7.5 -20.5 18 18 A K S S+ 0 0 187 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.178 104.7 88.8-166.6 56.3 6.5 -5.1 -22.1 19 19 A R - 0 0 212 2,-0.1 2,-0.6 0, 0.0 -2,-0.3 -0.974 65.0-120.5-153.6 161.9 3.5 -4.5 -19.8 20 20 A F + 0 0 207 -2,-0.3 2,-0.2 -4,-0.1 -4,-0.0 -0.939 56.0 114.4-114.0 115.2 2.4 -2.3 -16.9 21 21 A R - 0 0 184 -2,-0.6 2,-0.3 2,-0.0 -2,-0.1 -0.592 37.0-162.3 179.6 113.0 1.6 -4.0 -13.6 22 22 A T - 0 0 94 -2,-0.2 2,-0.5 42,-0.0 -8,-0.1 -0.800 5.5-155.9-105.0 145.7 3.2 -3.7 -10.2 23 23 A K + 0 0 165 -2,-0.3 2,-0.3 -10,-0.1 -10,-0.2 -0.977 21.3 164.7-125.1 118.7 2.8 -6.1 -7.4 24 24 A F - 0 0 57 -2,-0.5 2,-0.3 36,-0.0 3,-0.0 -0.802 31.4-113.2-127.4 168.8 3.4 -5.0 -3.8 25 25 A T >> - 0 0 76 -2,-0.3 4,-2.4 1,-0.1 3,-0.7 -0.710 33.8-105.9-103.4 154.9 2.6 -6.2 -0.3 26 26 A A H 3> S+ 0 0 46 -2,-0.3 4,-4.6 1,-0.3 5,-0.3 0.883 120.9 60.9 -40.3 -50.8 0.3 -4.7 2.3 27 27 A E H 3> S+ 0 0 99 1,-0.2 4,-4.2 2,-0.2 5,-0.3 0.912 107.9 42.2 -42.6 -57.7 3.4 -3.5 4.1 28 28 A Q H <> S+ 0 0 21 -3,-0.7 4,-3.9 2,-0.2 5,-0.3 0.934 116.5 48.5 -56.5 -50.5 4.5 -1.5 1.1 29 29 A K H X S+ 0 0 87 -4,-2.4 4,-3.8 2,-0.2 -2,-0.2 0.942 117.6 41.7 -54.9 -52.2 1.0 -0.2 0.6 30 30 A E H X S+ 0 0 125 -4,-4.6 4,-2.2 2,-0.2 5,-0.3 0.970 117.0 46.6 -59.4 -58.1 0.6 0.6 4.2 31 31 A K H X S+ 0 0 71 -4,-4.2 4,-4.4 -5,-0.3 3,-0.3 0.935 118.5 42.7 -48.9 -54.7 4.1 2.1 4.5 32 32 A M H X>S+ 0 0 0 -4,-3.9 4,-3.7 -5,-0.3 5,-0.6 0.924 106.2 61.9 -58.4 -48.3 3.6 4.1 1.3 33 33 A L H X5S+ 0 0 81 -4,-3.8 4,-1.0 -5,-0.3 -1,-0.2 0.877 119.6 28.2 -44.5 -45.1 0.1 5.0 2.3 34 34 A A H X5S+ 0 0 51 -4,-2.2 4,-1.8 -3,-0.3 -2,-0.2 0.948 117.0 57.9 -81.4 -57.4 1.7 6.8 5.3 35 35 A F H >X5S+ 0 0 6 -4,-4.4 4,-2.6 1,-0.3 3,-0.8 0.871 112.2 43.1 -37.8 -54.1 5.0 7.6 3.8 36 36 A A H 3X>S+ 0 0 0 -4,-3.7 5,-2.8 1,-0.3 4,-2.3 0.923 107.6 59.3 -60.5 -46.4 3.3 9.5 1.0 37 37 A E H 3< S+ 0 0 127 1,-0.2 2,-1.0 2,-0.1 4,-0.5 0.805 99.6 64.5 -77.2 -31.6 14.8 17.1 0.7 47 47 A D T 4 S+ 0 0 11 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.272 76.7 100.5 -87.0 47.9 12.8 13.9 0.4 48 48 A D T > S+ 0 0 89 -2,-1.0 4,-1.9 -3,-0.5 -1,-0.2 0.889 85.1 32.6 -94.6 -58.9 15.8 12.2 -1.1 49 49 A V H > S+ 0 0 98 -3,-0.5 4,-4.0 2,-0.2 5,-0.3 0.955 116.5 56.7 -63.2 -52.3 17.3 10.3 1.7 50 50 A A H X S+ 0 0 42 -4,-0.5 4,-2.0 1,-0.3 -1,-0.2 0.841 109.0 49.5 -47.1 -37.0 13.9 9.6 3.3 51 51 A V H > S+ 0 0 9 2,-0.2 4,-2.2 1,-0.2 -1,-0.3 0.902 112.9 45.2 -69.6 -42.8 13.1 8.1 -0.0 52 52 A E H X S+ 0 0 136 -4,-1.9 4,-3.0 2,-0.2 -2,-0.2 0.898 112.2 51.7 -66.7 -42.5 16.2 6.0 -0.0 53 53 A Q H X S+ 0 0 141 -4,-4.0 4,-0.6 2,-0.2 -2,-0.2 0.889 110.4 49.4 -60.9 -41.5 15.7 5.0 3.6 54 54 A F H >X S+ 0 0 18 -4,-2.0 4,-2.9 -5,-0.3 3,-1.0 0.925 112.0 46.7 -63.5 -47.3 12.2 3.9 2.8 55 55 A C H 3< S+ 0 0 35 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.928 104.0 61.5 -60.2 -46.7 13.3 1.8 -0.2 56 56 A A H 3< S+ 0 0 87 -4,-3.0 -1,-0.3 -5,-0.1 -2,-0.2 0.748 118.1 32.9 -51.1 -23.6 16.1 0.3 1.9 57 57 A E H << S+ 0 0 134 -3,-1.0 -2,-0.2 -4,-0.6 -1,-0.1 0.885 136.8 18.1 -95.5 -72.3 13.1 -0.9 4.0 58 58 A T S < S- 0 0 27 -4,-2.9 -3,-0.2 2,-0.1 -2,-0.1 0.962 93.0-132.4 -65.9 -54.3 10.2 -1.6 1.7 59 59 A G + 0 0 42 -5,-0.5 2,-0.2 1,-0.3 -4,-0.2 0.437 50.0 151.3 111.1 6.7 12.3 -1.8 -1.5 60 60 A V - 0 0 4 -6,-0.2 2,-0.3 1,-0.1 -1,-0.3 -0.501 46.5-120.9 -72.4 136.6 10.0 0.5 -3.6 61 61 A R > - 0 0 159 -2,-0.2 4,-4.1 1,-0.1 3,-0.3 -0.628 14.8-125.2 -81.9 134.4 11.8 2.5 -6.3 62 62 A R H > S+ 0 0 129 -2,-0.3 4,-4.6 1,-0.3 5,-0.3 0.878 115.4 48.9 -40.6 -50.7 11.6 6.2 -6.0 63 63 A Q H > S+ 0 0 122 2,-0.2 4,-2.3 1,-0.2 -1,-0.3 0.913 115.2 43.9 -57.5 -46.1 10.3 6.2 -9.6 64 64 A V H > S+ 0 0 36 -3,-0.3 4,-2.8 2,-0.2 -2,-0.2 0.941 118.9 43.3 -64.3 -49.2 7.8 3.5 -8.7 65 65 A L H X S+ 0 0 1 -4,-4.1 4,-3.0 2,-0.2 -2,-0.2 0.967 113.4 50.4 -60.1 -56.0 6.9 5.2 -5.5 66 66 A K H X S+ 0 0 97 -4,-4.6 4,-1.8 -5,-0.3 -1,-0.2 0.885 117.3 41.7 -48.6 -43.9 6.7 8.7 -7.0 67 67 A I H X S+ 0 0 89 -4,-2.3 4,-1.4 -5,-0.3 -1,-0.3 0.830 108.5 60.8 -72.9 -33.6 4.5 7.1 -9.7 68 68 A W H < S+ 0 0 31 -4,-2.8 3,-0.2 2,-0.2 -2,-0.2 0.927 105.7 48.2 -57.9 -46.8 2.7 5.2 -7.0 69 69 A M H >X S+ 0 0 2 -4,-3.0 4,-2.8 1,-0.3 3,-2.5 0.963 108.3 50.9 -57.6 -57.7 1.7 8.5 -5.4 70 70 A H H 3< S+ 0 0 129 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.751 105.8 60.3 -52.5 -24.1 0.5 10.1 -8.6 71 71 A N T 3< S+ 0 0 120 -4,-1.4 -1,-0.3 -3,-0.2 -2,-0.2 0.020 118.1 28.2 -92.7 25.9 -1.5 6.8 -9.0 72 72 A N T <4 S+ 0 0 71 -3,-2.5 3,-0.3 -31,-0.1 -2,-0.2 0.392 96.2 90.7-145.2 -55.4 -3.3 7.7 -5.7 73 73 A K S < S- 0 0 79 -4,-2.8 2,-0.1 1,-0.2 -32,-0.0 0.078 106.9 -49.5 -45.7 165.0 -3.4 11.4 -5.2 74 74 A N - 0 0 114 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.1 -0.186 60.8-164.4 -44.3 105.6 -6.5 13.2 -6.6 75 75 A S + 0 0 114 -3,-0.3 -1,-0.1 -4,-0.1 -2,-0.1 0.995 62.8 78.0 -58.7 -70.8 -6.5 11.8 -10.1 76 76 A G S S- 0 0 45 1,-0.0 0, 0.0 -3,-0.0 0, 0.0 0.120 89.9-104.4 -37.3 155.6 -8.8 14.3 -11.7 77 77 A P - 0 0 137 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.039 28.8-126.5 -75.0-171.6 -7.3 17.7 -12.6 78 78 A S - 0 0 103 -4,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.992 16.0-117.8-145.7 134.4 -7.8 21.0 -10.8 79 79 A S 0 0 133 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.229 360.0 360.0 -66.2 158.3 -8.9 24.4 -12.0 80 80 A G 0 0 131 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.460 360.0 360.0 137.9 360.0 -6.6 27.4 -11.7