==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-MAY-04 1WH8 . COMPND 2 MOLECULE: HOMEOBOX PROTEIN CUX-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.NAMEKI,N.TOCHIO,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8407.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 58.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 44.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 2 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-172.8 -23.0 -14.4 -48.2 2 2 A S - 0 0 126 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.878 360.0-167.7-148.6 178.4 -21.7 -16.9 -45.7 3 3 A S + 0 0 121 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 -0.915 44.3 56.1-157.2 179.5 -23.0 -20.2 -44.0 4 4 A G S S- 0 0 70 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.293 71.6-100.4 80.2-173.7 -21.9 -22.4 -41.1 5 5 A S + 0 0 124 -2,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.986 39.9 161.7-148.1 143.2 -21.5 -21.4 -37.5 6 6 A S + 0 0 126 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.924 29.5 63.4-157.1 174.9 -18.3 -20.7 -35.4 7 7 A G - 0 0 73 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.244 47.5-155.4 87.7 174.1 -17.1 -19.0 -32.2 8 8 A Y - 0 0 231 -2,-0.1 2,-0.3 0, 0.0 -2,-0.0 -0.925 9.8-175.1-163.5 176.7 -17.9 -19.9 -28.5 9 9 A S + 0 0 116 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.906 31.0 110.0-159.5-173.6 -18.1 -18.3 -25.0 10 10 A G + 0 0 72 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.908 35.3 123.1 102.8 78.6 -18.7 -19.4 -21.4 11 11 A S + 0 0 118 2,-0.0 -1,-0.3 0, 0.0 2,-0.3 -0.951 25.3 178.9-148.0 153.8 -15.9 -19.4 -18.8 12 12 A Q - 0 0 204 -2,-0.3 3,-0.1 3,-0.0 0, 0.0 -0.850 15.5-139.3-141.4 178.5 -15.4 -17.8 -15.4 13 13 A A - 0 0 73 -2,-0.3 -2,-0.0 1,-0.1 6,-0.0 -0.980 17.8-132.6-137.2 151.6 -12.9 -17.6 -12.6 14 14 A P - 0 0 116 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.836 46.6-151.8 -68.8 -32.4 -13.2 -17.6 -8.8 15 15 A G + 0 0 42 1,-0.1 3,-0.1 -3,-0.1 2,-0.1 -0.356 34.6 138.3 81.5-173.2 -10.7 -14.7 -8.5 16 16 A G >> - 0 0 50 1,-0.1 3,-1.2 -2,-0.1 4,-1.1 0.004 65.1 -87.9 107.4 150.7 -8.5 -14.0 -5.5 17 17 A I H >> S+ 0 0 39 1,-0.3 4,-2.7 2,-0.2 3,-0.6 0.867 120.9 60.0 -56.0 -41.8 -4.8 -12.9 -5.2 18 18 A Q H 3> S+ 0 0 79 1,-0.3 4,-1.2 2,-0.2 -1,-0.3 0.773 104.6 50.4 -66.5 -23.2 -3.4 -16.4 -5.3 19 19 A E H <> S+ 0 0 61 -3,-1.2 4,-1.2 2,-0.2 -1,-0.3 0.756 109.5 49.8 -84.0 -27.6 -4.9 -17.0 -8.8 20 20 A I H - 0 0 95 -2,-0.9 4,-2.4 1,-0.2 5,-0.2 -0.337 22.7-162.5 -54.0 97.8 11.9 -10.0 -9.2 29 29 A T H > S+ 0 0 7 -2,-0.6 4,-3.1 1,-0.2 5,-0.2 0.907 84.6 49.9 -58.5 -44.6 11.4 -9.9 -5.5 30 30 A Y H > S+ 0 0 131 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.952 111.3 45.5 -56.9 -59.8 14.6 -7.9 -4.9 31 31 A S H > S+ 0 0 62 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.875 115.6 48.8 -56.8 -40.8 14.0 -5.1 -7.5 32 32 A I H X S+ 0 0 4 -4,-2.4 4,-3.1 2,-0.2 5,-0.2 0.977 112.3 47.2 -63.0 -55.5 10.3 -4.8 -6.3 33 33 A T H X S+ 0 0 0 -4,-3.1 4,-2.7 -5,-0.2 -2,-0.2 0.888 114.3 49.6 -54.7 -41.9 11.4 -4.6 -2.6 34 34 A K H X S+ 0 0 90 -4,-2.9 4,-2.3 2,-0.2 -2,-0.2 0.983 114.4 41.8 -55.9 -61.9 14.0 -2.0 -3.6 35 35 A R H X S+ 0 0 137 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.883 115.2 52.2 -58.6 -39.7 11.6 0.2 -5.6 36 36 A V H X S+ 0 0 0 -4,-3.1 4,-2.4 2,-0.2 -1,-0.2 0.934 109.7 48.0 -61.8 -51.3 8.9 -0.2 -2.9 37 37 A K H X S+ 0 0 77 -4,-2.7 4,-2.9 -5,-0.2 -1,-0.2 0.901 111.6 51.1 -53.5 -45.3 11.3 0.9 -0.1 38 38 A E H X S+ 0 0 127 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.860 108.6 50.5 -68.5 -36.5 12.4 3.9 -2.2 39 39 A V H X S+ 0 0 24 -4,-2.2 4,-1.9 2,-0.2 6,-0.3 0.911 111.9 48.5 -62.5 -44.1 8.7 4.8 -2.8 40 40 A L H <>S+ 0 0 5 -4,-2.4 5,-1.9 1,-0.2 -2,-0.2 0.953 115.0 44.7 -60.6 -49.9 8.2 4.6 1.0 41 41 A T H ><5S+ 0 0 104 -4,-2.9 3,-1.4 3,-0.2 -2,-0.2 0.888 110.7 53.4 -61.7 -43.5 11.3 6.7 1.7 42 42 A D H 3<5S+ 0 0 131 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.950 117.2 37.7 -57.5 -48.5 10.5 9.3 -1.1 43 43 A N T 3<5S- 0 0 63 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.311 111.3-124.6 -84.7 5.9 7.0 9.9 0.4 44 44 A N T < 5 + 0 0 148 -3,-1.4 -3,-0.2 1,-0.2 -4,-0.1 0.587 56.0 160.3 53.4 21.5 8.5 9.6 4.0 45 45 A L < - 0 0 36 -5,-1.9 2,-0.5 -6,-0.3 -1,-0.2 -0.104 43.2-114.2 -66.3 163.4 6.0 6.8 4.7 46 46 A G >> - 0 0 47 1,-0.1 3,-1.6 -5,-0.0 4,-0.8 -0.920 18.1-132.9-109.9 117.9 6.3 4.1 7.5 47 47 A Q H 3> S+ 0 0 71 -2,-0.5 4,-2.3 1,-0.3 5,-0.1 0.724 99.5 63.2 -40.1 -43.8 6.7 0.5 6.3 48 48 A R H 3> S+ 0 0 137 2,-0.2 4,-2.7 1,-0.2 -1,-0.3 0.863 98.2 53.3 -52.0 -47.7 4.0 -0.9 8.7 49 49 A L H <> S+ 0 0 41 -3,-1.6 4,-2.7 1,-0.2 5,-0.4 0.941 110.3 46.3 -63.1 -52.5 1.1 1.0 7.1 50 50 A F H X>S+ 0 0 1 -4,-0.8 4,-2.4 1,-0.2 5,-1.2 0.922 113.8 50.6 -47.4 -51.4 1.9 -0.3 3.6 51 51 A G H <>S+ 0 0 0 -4,-2.3 6,-2.5 3,-0.2 5,-0.7 0.878 114.2 44.7 -60.9 -38.5 2.2 -3.8 5.1 52 52 A E H X5S+ 0 0 91 -4,-2.7 4,-1.3 4,-0.3 -2,-0.2 0.991 122.0 33.0 -65.3 -65.0 -1.1 -3.5 6.9 53 53 A S H <5S+ 0 0 56 -4,-2.7 -3,-0.2 2,-0.2 -2,-0.2 0.815 134.5 24.6 -70.8 -36.9 -3.3 -2.0 4.1 54 54 A I T <5S+ 0 0 33 -4,-2.4 -3,-0.2 -5,-0.4 -1,-0.1 0.900 136.2 23.5 -89.5 -55.3 -1.6 -3.7 1.1 55 55 A L T 4 - 0 0 83 -2,-0.4 4,-2.4 -3,-0.1 5,-0.2 -0.298 36.1-112.0 -55.2 149.2 2.8 -7.4 10.8 59 59 A Q H > S+ 0 0 85 2,-0.2 4,-3.0 1,-0.2 5,-0.3 0.900 120.6 55.7 -59.5 -40.9 5.7 -4.8 10.7 60 60 A G H > S+ 0 0 59 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.948 112.1 43.2 -50.0 -52.3 8.1 -7.6 11.8 61 61 A S H > S+ 0 0 52 2,-0.2 4,-1.5 1,-0.2 -2,-0.2 0.810 116.3 46.0 -66.5 -38.1 7.0 -9.6 8.8 62 62 A V H X S+ 0 0 1 -4,-2.4 4,-2.6 2,-0.2 5,-0.2 0.909 112.4 49.7 -73.5 -43.4 7.0 -6.6 6.3 63 63 A S H X S+ 0 0 31 -4,-3.0 4,-2.5 1,-0.2 -2,-0.2 0.883 112.1 48.8 -65.4 -37.4 10.4 -5.3 7.4 64 64 A D H X S+ 0 0 87 -4,-2.1 4,-2.5 -5,-0.3 -1,-0.2 0.873 109.2 54.6 -63.4 -39.9 11.8 -8.9 7.0 65 65 A L H < S+ 0 0 25 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.952 115.8 36.4 -58.8 -52.2 10.2 -9.0 3.6 66 66 A L H < S+ 0 0 3 -4,-2.6 -2,-0.2 2,-0.2 -1,-0.2 0.857 118.0 52.9 -67.3 -41.4 11.9 -5.8 2.4 67 67 A S H < S+ 0 0 84 -4,-2.5 -2,-0.2 1,-0.2 -3,-0.2 0.972 131.4 3.5 -59.5 -60.7 15.1 -6.6 4.3 68 68 A R S < S- 0 0 200 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 -0.637 77.0-171.7-134.7 68.5 15.9 -10.1 3.0 69 69 A P - 0 0 23 0, 0.0 -39,-0.1 0, 0.0 -4,-0.1 -0.339 23.2-126.4 -60.8 141.1 13.3 -11.1 0.3 70 70 A K - 0 0 113 1,-0.1 -41,-0.1 9,-0.1 5,-0.0 -0.553 37.8 -91.5 -75.2 159.1 13.5 -14.7 -0.8 71 71 A P > - 0 0 55 0, 0.0 4,-1.5 0, 0.0 3,-0.3 -0.323 34.1-110.8 -68.2 157.5 13.8 -15.3 -4.6 72 72 A W T 4 S+ 0 0 14 1,-0.2 3,-0.4 2,-0.2 8,-0.1 0.912 118.5 56.1 -56.4 -44.1 10.6 -15.8 -6.6 73 73 A H T 4 S+ 0 0 132 1,-0.2 -1,-0.2 -47,-0.0 -3,-0.0 0.899 106.9 49.7 -55.7 -44.3 11.5 -19.5 -7.2 74 74 A K T 4 S+ 0 0 133 -3,-0.3 2,-0.3 5,-0.0 -1,-0.2 0.826 96.9 83.4 -62.2 -39.1 11.8 -20.1 -3.4 75 75 A L S < S- 0 0 18 -4,-1.5 2,-0.1 -3,-0.4 5,-0.0 -0.544 72.3-144.6 -76.9 130.2 8.4 -18.5 -2.7 76 76 A S >> - 0 0 73 -2,-0.3 4,-2.1 1,-0.1 3,-0.6 -0.263 45.0 -85.1 -71.5 178.2 5.3 -20.7 -3.1 77 77 A L H 3> S+ 0 0 60 1,-0.3 4,-2.0 2,-0.2 3,-0.3 0.947 138.5 49.4 -56.8 -45.8 2.1 -18.8 -4.4 78 78 A K H 34 S+ 0 0 139 1,-0.2 -1,-0.3 2,-0.2 -3,-0.1 0.801 110.7 52.8 -57.8 -30.2 1.4 -17.8 -0.8 79 79 A G H <4 S+ 0 0 21 -3,-0.6 4,-0.4 1,-0.2 -1,-0.2 0.864 112.6 42.1 -67.3 -42.4 5.0 -16.7 -0.7 80 80 A R H X S+ 0 0 51 -4,-2.1 4,-2.3 -3,-0.3 5,-0.2 0.709 89.6 95.1 -82.3 -22.7 4.6 -14.5 -3.8 81 81 A E H X S+ 0 0 54 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.811 89.0 40.0 -36.7 -57.4 1.2 -13.2 -2.7 82 82 A P H > S+ 0 0 18 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.917 113.0 54.0 -67.1 -43.7 2.6 -10.0 -1.1 83 83 A F H > S+ 0 0 0 -4,-0.4 4,-2.7 2,-0.2 -2,-0.2 0.840 106.2 53.2 -63.7 -33.6 5.2 -9.3 -3.9 84 84 A V H X S+ 0 0 2 -4,-2.3 4,-2.6 2,-0.2 5,-0.3 0.963 109.1 49.1 -61.5 -50.5 2.5 -9.5 -6.5 85 85 A R H X S+ 0 0 106 -4,-1.7 4,-2.8 -5,-0.2 -2,-0.2 0.877 111.5 50.5 -57.2 -38.6 0.5 -6.9 -4.6 86 86 A M H X S+ 0 0 0 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.945 108.8 49.9 -63.5 -50.2 3.7 -4.7 -4.4 87 87 A Q H X S+ 0 0 59 -4,-2.7 4,-1.6 1,-0.2 3,-0.3 0.941 117.1 41.6 -53.0 -50.1 4.3 -4.9 -8.1 88 88 A L H X S+ 0 0 82 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.906 111.6 55.2 -65.5 -41.1 0.7 -3.9 -8.8 89 89 A W H < S+ 0 0 15 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.2 0.758 106.8 52.1 -64.2 -26.1 0.8 -1.2 -6.0 90 90 A L H < S+ 0 0 12 -4,-1.9 -1,-0.2 -3,-0.3 -2,-0.2 0.897 112.5 44.7 -72.5 -40.8 3.9 0.3 -7.8 91 91 A N H < S+ 0 0 119 -4,-1.6 -2,-0.2 -5,-0.2 -1,-0.2 0.765 90.4 96.2 -71.3 -33.4 2.0 0.4 -11.1 92 92 A D >< - 0 0 85 -4,-2.2 3,-1.0 1,-0.1 4,-0.2 -0.485 67.8-151.7 -61.8 125.9 -1.2 1.8 -9.5 93 93 A P T 3 S+ 0 0 103 0, 0.0 3,-0.2 0, 0.0 4,-0.2 0.684 94.4 44.8 -82.8 -17.7 -0.9 5.6 -10.0 94 94 A H T 3> S+ 0 0 96 1,-0.1 4,-2.1 2,-0.1 5,-0.2 -0.162 81.8 114.6-109.0 25.4 -3.0 6.6 -6.9 95 95 A N H <> S+ 0 0 22 -3,-1.0 4,-1.7 2,-0.2 -1,-0.1 0.951 81.0 36.8 -60.1 -56.5 -1.1 4.0 -4.8 96 96 A V H > S+ 0 0 18 -4,-0.2 4,-3.3 2,-0.2 5,-0.3 0.852 113.1 61.3 -69.7 -35.4 0.6 6.4 -2.4 97 97 A E H > S+ 0 0 122 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.957 109.9 39.0 -53.8 -57.4 -2.6 8.6 -2.5 98 98 A K H X S+ 0 0 116 -4,-2.1 4,-0.8 1,-0.2 -1,-0.2 0.857 116.1 54.2 -62.8 -36.2 -4.7 5.8 -1.0 99 99 A L H >X S+ 0 0 2 -4,-1.7 4,-0.7 2,-0.2 3,-0.6 0.906 110.6 43.1 -68.3 -45.0 -1.8 4.8 1.3 100 100 A R H >X S+ 0 0 163 -4,-3.3 4,-2.7 1,-0.2 3,-1.2 0.916 105.5 66.0 -63.4 -39.3 -1.4 8.4 2.8 101 101 A D H 3< S+ 0 0 84 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.734 91.0 64.3 -58.3 -23.4 -5.2 8.6 3.1 102 102 A M H << S+ 0 0 104 -4,-0.8 -1,-0.3 -3,-0.6 -2,-0.2 0.928 117.1 26.4 -59.6 -50.3 -5.0 5.8 5.7 103 103 A K H << S+ 0 0 138 -3,-1.2 -2,-0.2 -4,-0.7 -1,-0.2 0.806 89.8 161.7 -77.0 -35.1 -3.1 8.1 8.0 104 104 A K < - 0 0 127 -4,-2.7 2,-0.4 -5,-0.1 -1,-0.1 -0.131 65.6 -24.0 33.4-134.2 -4.6 11.2 6.5 105 105 A L S S- 0 0 163 -4,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.798 75.6-175.5 -87.4 143.4 -4.0 14.0 9.1 106 106 A S - 0 0 86 -2,-0.4 3,-0.1 1,-0.1 -2,-0.0 -0.874 29.4 -95.9-127.6 166.3 -3.6 12.9 12.7 107 107 A G - 0 0 56 -2,-0.3 -1,-0.1 1,-0.2 0, 0.0 -0.250 66.0 -60.5 -70.6 171.9 -3.2 14.7 16.1 108 108 A P - 0 0 140 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 -0.122 48.6-163.9 -57.9 148.3 0.3 15.4 17.5 109 109 A S - 0 0 99 1,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.992 56.1 -32.9-140.0 126.6 2.6 12.4 18.4 110 110 A S 0 0 127 -2,-0.4 -1,-0.1 1,-0.1 0, 0.0 -0.010 360.0 360.0 53.1-170.0 5.6 12.9 20.6 111 111 A G 0 0 130 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.675 360.0 360.0 -84.2 360.0 7.4 16.2 20.5