==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WHC . COMPND 2 MOLECULE: UBA/UBX 33.3 KDA PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.ONUKI,Y.DOI-KATAYAMA,H.HIROTA,T.TOMIZAWA,S.KOSHIBA, . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5226.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 36 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 34.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 139 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 160.6 15.7 12.3 -9.4 2 2 A S + 0 0 135 1,-0.5 2,-0.3 0, 0.0 0, 0.0 0.606 360.0 10.3-126.9 -58.3 17.1 13.5 -6.1 3 3 A S + 0 0 121 2,-0.0 -1,-0.5 1,-0.0 0, 0.0 -0.958 52.7 151.6-131.8 149.2 19.6 10.9 -4.8 4 4 A G + 0 0 75 -2,-0.3 2,-0.4 -3,-0.1 3,-0.1 -0.225 19.3 146.8-176.0 72.9 21.3 7.9 -6.3 5 5 A S - 0 0 113 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.943 56.5 -3.1-120.2 139.8 24.7 6.9 -5.0 6 6 A S - 0 0 121 -2,-0.4 2,-0.4 1,-0.1 -1,-0.1 0.410 69.0-118.0 61.1 153.0 26.1 3.4 -4.7 7 7 A G + 0 0 60 -3,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.808 45.7 154.8-130.2 90.6 24.1 0.3 -5.5 8 8 A A - 0 0 66 -2,-0.4 2,-0.5 7,-0.0 0, 0.0 -0.516 39.6-125.3-107.1 176.6 23.6 -2.0 -2.5 9 9 A E + 0 0 148 -2,-0.2 3,-0.1 1,-0.2 -2,-0.0 -0.860 30.0 166.4-130.0 96.5 20.9 -4.6 -1.7 10 10 A L - 0 0 118 -2,-0.5 2,-0.3 1,-0.3 -1,-0.2 0.992 66.2 -37.8 -69.6 -65.0 19.2 -4.1 1.7 11 11 A T > - 0 0 79 1,-0.1 4,-3.6 26,-0.0 -1,-0.3 -0.961 58.6 -92.0-156.8 168.5 16.3 -6.4 1.2 12 12 A A H > S+ 0 0 38 -2,-0.3 4,-1.3 2,-0.2 5,-0.1 0.854 128.0 44.7 -53.1 -37.1 13.8 -7.7 -1.3 13 13 A L H >> S+ 0 0 19 2,-0.2 4,-2.2 3,-0.1 3,-0.9 0.995 114.7 43.5 -69.9 -67.8 11.6 -4.9 -0.1 14 14 A E H 3> S+ 0 0 66 1,-0.3 4,-2.2 2,-0.2 5,-0.2 0.896 109.7 59.3 -42.7 -52.6 14.0 -2.1 0.0 15 15 A S H 3< S+ 0 0 30 -4,-3.6 3,-0.3 1,-0.3 -1,-0.3 0.891 106.9 47.0 -43.8 -49.5 15.4 -3.2 -3.3 16 16 A L H X<>S+ 0 0 0 -4,-1.3 3,-3.7 -3,-0.9 5,-0.8 0.938 106.5 56.6 -59.2 -49.6 11.9 -2.7 -4.8 17 17 A I H ><5S+ 0 0 52 -4,-2.2 3,-2.6 1,-0.3 -1,-0.3 0.827 94.9 68.1 -50.9 -33.7 11.6 0.7 -3.1 18 18 A E T 3<5S+ 0 0 138 -4,-2.2 -1,-0.3 1,-0.3 -2,-0.2 0.659 90.9 63.2 -60.9 -15.2 14.8 1.5 -5.0 19 19 A M T < 5S- 0 0 86 -3,-3.7 -1,-0.3 -5,-0.2 -2,-0.2 0.263 125.4-103.7 -92.4 9.9 12.6 1.4 -8.1 20 20 A G T < 5S+ 0 0 70 -3,-2.6 -3,-0.2 1,-0.3 -2,-0.2 0.734 75.0 148.7 73.8 24.0 10.6 4.3 -6.8 21 21 A F < - 0 0 48 -5,-0.8 -1,-0.3 -4,-0.2 2,-0.2 -0.615 52.8-103.0 -92.2 151.8 7.8 1.9 -5.7 22 22 A P > - 0 0 64 0, 0.0 4,-2.6 0, 0.0 3,-0.4 -0.519 21.3-133.9 -75.0 137.1 5.5 2.4 -2.8 23 23 A R H > S+ 0 0 154 1,-0.2 4,-3.4 -2,-0.2 5,-0.5 0.956 105.2 58.7 -51.7 -59.4 6.2 0.4 0.3 24 24 A G H > S+ 0 0 53 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.836 113.7 41.0 -38.0 -45.0 2.6 -0.6 0.8 25 25 A R H > S+ 0 0 78 -3,-0.4 4,-4.6 2,-0.2 5,-0.2 0.996 116.1 45.1 -68.8 -67.6 2.8 -2.2 -2.7 26 26 A A H X S+ 0 0 0 -4,-2.6 4,-4.0 1,-0.2 5,-0.3 0.907 119.4 44.3 -40.5 -58.2 6.3 -3.7 -2.5 27 27 A E H X S+ 0 0 80 -4,-3.4 4,-3.7 2,-0.2 5,-0.3 0.949 115.8 46.5 -52.8 -56.4 5.5 -5.1 0.9 28 28 A K H X S+ 0 0 80 -4,-2.4 4,-4.3 -5,-0.5 -2,-0.2 0.933 117.8 44.1 -51.7 -51.9 2.0 -6.2 -0.2 29 29 A A H X S+ 0 0 0 -4,-4.6 4,-4.2 2,-0.2 5,-0.4 0.985 113.7 48.0 -56.5 -65.1 3.5 -7.8 -3.3 30 30 A L H X>S+ 0 0 0 -4,-4.0 5,-4.0 1,-0.3 4,-4.0 0.892 118.2 43.2 -41.3 -51.8 6.5 -9.4 -1.6 31 31 A A H <5S+ 0 0 58 -4,-3.7 -1,-0.3 -5,-0.3 -2,-0.2 0.950 113.5 50.7 -60.5 -51.8 4.1 -10.7 1.0 32 32 A L H <5S+ 0 0 96 -4,-4.3 -2,-0.2 -5,-0.3 -1,-0.2 0.925 117.6 40.0 -51.1 -50.5 1.5 -11.7 -1.6 33 33 A T H <5S- 0 0 48 -4,-4.2 -2,-0.2 -5,-0.2 -1,-0.2 0.915 123.1-106.6 -65.6 -45.0 4.3 -13.5 -3.5 34 34 A G T <5 - 0 0 39 -4,-4.0 -3,-0.3 -5,-0.4 -4,-0.1 0.664 53.3 -75.4 118.7 38.9 5.8 -14.8 -0.3 35 35 A N S - 0 0 21 1,-0.2 4,-2.0 -7,-0.1 -1,-0.4 -0.971 47.0 -79.0 176.5-174.8 12.4 -12.1 -4.5 38 38 A I H > S+ 0 0 43 -2,-0.3 4,-3.7 2,-0.2 5,-0.3 0.992 122.0 48.7 -71.4 -67.2 12.0 -9.0 -6.7 39 39 A E H > S+ 0 0 166 1,-0.3 4,-2.5 2,-0.2 -1,-0.1 0.861 115.3 48.2 -38.7 -48.7 11.3 -10.6 -10.0 40 40 A A H > S+ 0 0 39 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.950 117.8 40.2 -59.2 -52.0 8.7 -12.7 -8.2 41 41 A A H >X S+ 0 0 0 -4,-2.0 4,-1.8 1,-0.2 3,-1.7 0.980 111.7 55.6 -60.3 -60.3 7.2 -9.7 -6.5 42 42 A M H 3X S+ 0 0 60 -4,-3.7 4,-3.1 1,-0.3 5,-0.5 0.866 98.7 63.2 -37.8 -52.8 7.5 -7.4 -9.6 43 43 A D H 3X S+ 0 0 122 -4,-2.5 4,-1.9 -5,-0.3 -1,-0.3 0.882 106.8 44.4 -40.4 -50.1 5.5 -10.0 -11.5 44 44 A W H X S+ 0 0 4 -4,-1.8 4,-0.6 1,-0.3 3,-0.5 0.950 111.3 49.1 -45.4 -67.0 3.2 -5.5 -9.3 46 46 A M H >< S+ 0 0 84 -4,-3.1 3,-0.6 1,-0.3 -1,-0.3 0.827 114.7 47.9 -42.3 -39.4 3.4 -5.5 -13.1 47 47 A E H >< S+ 0 0 148 -4,-1.9 3,-0.6 -5,-0.5 -1,-0.3 0.888 116.7 40.6 -70.7 -41.1 0.2 -7.5 -13.0 48 48 A H H X< S+ 0 0 40 -4,-3.2 3,-3.3 -3,-0.5 -1,-0.2 0.203 80.5 116.0 -90.9 14.1 -1.4 -5.1 -10.5 49 49 A E T << S+ 0 0 120 -3,-0.6 -1,-0.2 -4,-0.6 -2,-0.1 0.747 89.1 33.9 -53.3 -24.1 0.1 -2.2 -12.4 50 50 A D T < S+ 0 0 135 -3,-0.6 -1,-0.3 -5,-0.2 -2,-0.1 -0.024 90.6 167.4-120.0 25.9 -3.5 -1.3 -13.1 51 51 A D < - 0 0 41 -3,-3.3 3,-0.3 -6,-0.2 -3,-0.1 -0.011 39.1-133.9 -41.1 145.7 -4.8 -2.5 -9.8 52 52 A P S S- 0 0 115 0, 0.0 -1,-0.1 0, 0.0 2,-0.0 0.815 93.7 -5.1 -74.9 -32.7 -8.4 -1.4 -9.1 53 53 A D > + 0 0 108 3,-0.1 3,-0.6 1,-0.0 -2,-0.0 -0.456 63.7 165.6-164.2 80.0 -7.5 -0.3 -5.6 54 54 A V T 3 S+ 0 0 30 1,-0.3 2,-0.2 -3,-0.3 -26,-0.1 0.759 92.0 24.7 -69.0 -25.3 -4.0 -1.1 -4.4 55 55 A D T 3 S- 0 0 127 -3,-0.0 -1,-0.3 -30,-0.0 3,-0.1 -0.621 87.9-154.6-142.0 76.9 -4.6 1.3 -1.6 56 56 A E < - 0 0 119 -3,-0.6 2,-0.2 -2,-0.2 -3,-0.1 -0.081 30.7 -96.4 -50.2 151.1 -8.3 1.6 -0.8 57 57 A P - 0 0 98 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.487 25.5-152.1 -75.0 141.7 -9.4 4.8 0.8 58 58 A L S S+ 0 0 143 -2,-0.2 -2,-0.0 -3,-0.1 0, 0.0 -0.660 84.3 31.3-115.0 72.8 -9.8 4.8 4.6 59 59 A S S S- 0 0 135 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 -0.037 102.1-108.0 177.8 -54.6 -12.5 7.5 5.1 60 60 A G - 0 0 41 2,-0.0 2,-0.9 0, 0.0 -2,-0.1 -0.309 42.9 -58.7 119.1 157.5 -14.9 7.7 2.2 61 61 A P + 0 0 142 0, 0.0 2,-0.7 0, 0.0 3,-0.1 -0.613 51.8 176.9 -75.0 104.8 -15.7 10.0 -0.7 62 62 A S - 0 0 112 -2,-0.9 -2,-0.0 1,-0.4 0, 0.0 -0.751 55.9 -64.1-112.3 82.0 -16.5 13.3 0.9 63 63 A S 0 0 130 -2,-0.7 -1,-0.4 1,-0.0 0, 0.0 0.304 360.0 360.0 58.1 163.5 -17.1 15.7 -2.0 64 64 A G 0 0 127 -3,-0.1 -2,-0.1 0, 0.0 -1,-0.0 0.879 360.0 360.0 89.7 360.0 -14.4 16.7 -4.5