==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTITUMOR PROTEIN 28-MAY-04 1WHM . COMPND 2 MOLECULE: CYLINDROMATOSIS TUMOR SUPPRESSOR CYLD; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.SAITOK,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6327.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 28 30.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 114 0, 0.0 2,-0.2 0, 0.0 38,-0.0 0.000 360.0 360.0 360.0-170.4 6.3 -19.1 2.7 2 2 A S - 0 0 119 3,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.803 360.0-127.5-143.5-176.1 10.0 -18.5 3.5 3 3 A S S S+ 0 0 122 -2,-0.2 2,-0.4 3,-0.0 3,-0.1 -0.969 71.0 45.1-140.6 155.2 12.5 -18.8 6.3 4 4 A G S S+ 0 0 87 -2,-0.3 2,-0.2 1,-0.1 -1,-0.0 -0.525 97.1 61.9 115.1 -65.1 15.1 -16.6 8.0 5 5 A S - 0 0 110 -2,-0.4 2,-0.4 2,-0.1 -1,-0.1 -0.652 62.7-155.9 -97.7 154.8 13.2 -13.3 8.5 6 6 A S + 0 0 127 -2,-0.2 -3,-0.0 2,-0.1 0, 0.0 -0.929 56.1 9.5-135.2 110.3 10.1 -12.8 10.7 7 7 A G S S- 0 0 59 -2,-0.4 -2,-0.1 25,-0.0 26,-0.0 -0.632 100.6 -25.0 119.3-178.7 7.7 -10.0 10.1 8 8 A P - 0 0 65 0, 0.0 4,-0.1 0, 0.0 -2,-0.1 -0.438 45.8-145.8 -70.7 139.9 7.1 -7.3 7.4 9 9 A P S S+ 0 0 82 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.924 80.6 73.6 -70.9 -46.2 10.1 -6.2 5.3 10 10 A L S S- 0 0 17 1,-0.1 2,-0.1 4,-0.0 6,-0.0 -0.522 95.8-107.6 -73.4 133.0 9.1 -2.5 5.0 11 11 A E > - 0 0 138 -2,-0.3 3,-0.8 1,-0.1 2,-0.2 -0.365 35.0-123.0 -61.9 133.1 9.6 -0.5 8.1 12 12 A I T 3 S+ 0 0 75 1,-0.2 18,-0.2 -4,-0.1 3,-0.1 -0.507 90.3 14.7 -79.5 146.5 6.3 0.4 9.8 13 13 A N T 3 S+ 0 0 140 16,-0.8 -1,-0.2 1,-0.2 2,-0.2 0.818 103.1 128.1 60.8 31.2 5.3 4.0 10.4 14 14 A S < - 0 0 28 -3,-0.8 15,-2.5 -4,-0.0 2,-0.6 -0.494 64.6-101.8-108.8-180.0 8.1 5.0 8.0 15 15 A R E +A 28 0A 148 13,-0.2 70,-0.7 -2,-0.2 2,-0.3 -0.923 48.2 152.9-110.6 119.7 8.3 7.3 4.9 16 16 A V E -AB 27 84A 6 11,-3.0 11,-1.4 -2,-0.6 2,-0.1 -0.997 31.5-133.4-145.7 146.8 8.3 5.7 1.5 17 17 A S E -AB 26 83A 6 66,-2.5 66,-2.9 -2,-0.3 2,-0.4 -0.363 15.6-137.8 -92.3 174.7 7.2 6.7 -2.0 18 18 A L E -AB 25 82A 0 7,-1.1 7,-1.7 64,-0.3 2,-1.3 -0.998 15.1-124.7-139.5 133.9 5.2 4.7 -4.6 19 19 A K E +A 24 0A 105 62,-2.2 2,-0.6 -2,-0.4 5,-0.3 -0.624 37.7 177.4 -79.2 94.9 5.7 4.3 -8.3 20 20 A V E > -A 23 0A 41 3,-2.1 3,-2.1 -2,-1.3 2,-0.5 -0.887 56.2 -49.9-104.8 121.4 2.3 5.5 -9.7 21 21 A G T 3 S- 0 0 74 -2,-0.6 -2,-0.0 1,-0.3 3,-0.0 -0.399 123.9 -19.3 60.0-108.8 1.9 5.5 -13.5 22 22 A E T 3 S+ 0 0 194 -2,-0.5 2,-0.3 2,-0.0 -1,-0.3 -0.022 131.4 49.6-120.3 27.5 5.0 7.4 -14.8 23 23 A T E < S-A 20 0A 86 -3,-2.1 -3,-2.1 -5,-0.1 2,-0.3 -0.963 75.1-113.2-156.0 168.7 5.9 9.2 -11.5 24 24 A I E -A 19 0A 64 -2,-0.3 2,-0.4 -5,-0.3 -5,-0.2 -0.792 17.8-158.0-110.8 153.8 6.5 8.6 -7.8 25 25 A E E -A 18 0A 68 -7,-1.7 -7,-1.1 -2,-0.3 58,-0.2 -0.963 19.0-127.4-136.2 118.2 4.6 9.7 -4.8 26 26 A S E +A 17 0A 62 -2,-0.4 24,-0.8 -9,-0.3 25,-0.3 -0.309 43.3 153.0 -61.5 141.1 6.0 10.0 -1.3 27 27 A G E -AC 16 49A 0 -11,-1.4 -11,-3.0 22,-0.2 2,-0.3 -0.895 38.0-100.4-155.4-176.1 4.0 8.3 1.4 28 28 A T E -AC 15 48A 31 20,-1.2 20,-3.3 -13,-0.3 2,-0.3 -0.861 30.3-117.8-118.6 153.3 4.0 6.6 4.8 29 29 A V E + C 0 47A 0 -15,-2.5 -16,-0.8 -2,-0.3 18,-0.2 -0.626 46.9 138.5 -89.6 147.0 4.0 2.9 5.8 30 30 A I E + 0 0 38 16,-1.0 2,-0.4 1,-0.4 -1,-0.1 0.387 65.5 34.3-151.3 -43.4 1.2 1.3 7.8 31 31 A F E + C 0 46A 36 15,-1.3 15,-2.4 35,-0.1 -1,-0.4 -0.983 51.6 167.8-129.3 138.2 0.4 -2.2 6.4 32 32 A C E + C 0 45A 4 -2,-0.4 2,-0.3 13,-0.2 13,-0.2 -0.744 33.7 95.5-152.3 97.9 2.7 -4.8 4.8 33 33 A D E - C 0 44A 76 11,-1.6 11,-0.6 -2,-0.2 2,-0.1 -0.908 63.6 -78.6-162.4-172.8 1.5 -8.3 4.2 34 34 A V - 0 0 38 -2,-0.3 5,-0.1 9,-0.2 9,-0.1 -0.315 36.0-130.0 -94.2-179.7 0.1 -10.8 1.6 35 35 A L > - 0 0 3 3,-0.3 3,-2.1 7,-0.2 6,-0.1 -0.945 35.3 -78.6-133.6 154.3 -3.5 -11.2 0.4 36 36 A P T 3 S+ 0 0 67 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 -0.232 117.2 0.5 -52.1 128.8 -5.8 -14.2 -0.1 37 37 A G T 3 S+ 0 0 85 1,-0.1 0, 0.0 3,-0.0 0, 0.0 0.793 120.6 84.4 60.3 28.1 -5.0 -16.2 -3.2 38 38 A K <> + 0 0 74 -3,-2.1 4,-0.6 4,-0.1 -3,-0.3 -0.004 44.9 111.3-148.1 31.2 -2.1 -13.7 -3.9 39 39 A E T 4 S+ 0 0 135 1,-0.2 3,-0.4 2,-0.2 0, 0.0 0.816 78.7 54.8 -77.2 -32.1 0.7 -15.1 -1.8 40 40 A S T 4 S+ 0 0 132 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 0.806 95.9 67.4 -70.7 -30.1 2.7 -16.1 -4.9 41 41 A L T 4 S- 0 0 100 1,-0.2 2,-0.4 -6,-0.1 -1,-0.2 0.850 112.1-115.4 -58.7 -35.4 2.5 -12.5 -6.2 42 42 A G < - 0 0 18 -4,-0.6 2,-0.3 -3,-0.4 -1,-0.2 -0.974 51.3 -32.2 141.9-125.9 4.7 -11.3 -3.4 43 43 A Y - 0 0 105 -2,-0.4 36,-1.2 -9,-0.1 -9,-0.2 -0.840 52.9-147.2-141.9 101.1 3.9 -9.0 -0.5 44 44 A F E -CD 33 78A 31 -11,-0.6 -11,-1.6 -2,-0.3 2,-0.4 -0.237 14.4-160.8 -63.8 153.8 1.5 -6.2 -0.9 45 45 A V E -CD 32 77A 0 32,-2.9 32,-2.6 -13,-0.2 2,-0.7 -0.989 12.3-141.6-143.4 131.1 2.0 -2.9 1.1 46 46 A G E -CD 31 76A 0 -15,-2.4 -15,-1.3 -2,-0.4 -16,-1.0 -0.820 18.9-167.7 -96.6 114.4 -0.3 -0.1 1.9 47 47 A V E -CD 29 75A 0 28,-2.7 2,-1.0 -2,-0.7 28,-0.8 -0.870 14.0-144.9-104.4 129.2 1.3 3.3 1.8 48 48 A D E -CD 28 74A 54 -20,-3.3 -20,-1.2 -2,-0.5 26,-0.2 -0.771 21.1-156.4 -94.6 97.2 -0.5 6.4 3.2 49 49 A M E -C 27 0A 2 24,-1.3 -22,-0.2 -2,-1.0 5,-0.1 -0.211 19.1-129.1 -67.7 161.7 0.3 9.3 1.0 50 50 A D S S+ 0 0 112 -24,-0.8 -1,-0.1 2,-0.1 -23,-0.1 0.803 90.7 61.1 -81.6 -31.7 0.2 12.9 2.2 51 51 A N S S- 0 0 99 -25,-0.3 2,-2.0 22,-0.1 -2,-0.1 -0.613 103.5 -93.5 -96.1 156.8 -2.0 14.1 -0.6 52 52 A P S S+ 0 0 111 0, 0.0 21,-0.2 0, 0.0 -2,-0.1 -0.457 86.3 112.0 -70.3 81.3 -5.5 12.8 -1.5 53 53 A I + 0 0 61 -2,-2.0 20,-0.3 19,-0.1 -3,-0.1 0.013 40.6 126.8-141.5 28.0 -4.5 10.2 -4.1 54 54 A G - 0 0 19 18,-3.7 21,-0.2 -5,-0.1 20,-0.1 -0.086 31.6-179.3 -79.2-176.5 -5.4 6.9 -2.3 55 55 A N + 0 0 94 19,-2.2 2,-0.2 15,-0.3 16,-0.2 0.109 56.0 77.0-177.2 38.3 -7.5 4.0 -3.6 56 56 A W - 0 0 32 14,-0.5 14,-1.0 18,-0.5 16,-0.3 -0.757 40.6-176.2-162.3 109.3 -7.7 1.4 -0.9 57 57 A D - 0 0 71 13,-0.2 -1,-0.1 -2,-0.2 18,-0.1 0.804 64.8 -92.8 -75.4 -30.3 -9.8 1.4 2.2 58 58 A G S S+ 0 0 0 1,-0.3 7,-1.4 12,-0.1 8,-1.1 0.719 82.4 116.4 118.1 47.3 -8.4 -1.9 3.4 59 59 A R E -E 64 0B 144 5,-0.3 2,-0.3 6,-0.2 5,-0.3 -0.902 45.2-152.1-137.9 165.9 -10.6 -4.7 2.2 60 60 A F E > S-E 63 0B 32 3,-3.3 3,-1.3 -2,-0.3 4,-0.0 -0.805 79.7 -32.4-145.5 99.4 -10.4 -7.8 -0.1 61 61 A D T 3 S- 0 0 162 -2,-0.3 3,-0.1 1,-0.3 0, 0.0 0.806 129.5 -41.9 61.2 29.6 -13.5 -9.1 -1.8 62 62 A G T 3 S+ 0 0 54 1,-0.4 -1,-0.3 0, 0.0 2,-0.0 -0.282 117.7 106.7 114.0 -47.4 -15.5 -7.9 1.2 63 63 A V E < -E 60 0B 79 -3,-1.3 -3,-3.3 -4,-0.1 2,-0.5 -0.317 67.9-126.2 -66.6 149.0 -13.2 -9.0 4.0 64 64 A Q E +E 59 0B 69 -5,-0.3 -5,-0.3 1,-0.2 3,-0.1 -0.871 37.1 160.0-102.9 124.6 -11.2 -6.4 5.9 65 65 A L S S+ 0 0 62 -7,-1.4 2,-0.5 -2,-0.5 -6,-0.2 0.761 70.1 39.6-107.4 -41.8 -7.4 -6.7 6.1 66 66 A C + 0 0 3 -8,-1.1 -1,-0.3 1,-0.1 -35,-0.1 -0.946 52.9 175.8-117.8 115.4 -6.3 -3.2 6.9 67 67 A S S S+ 0 0 98 -2,-0.5 -1,-0.1 1,-0.2 -8,-0.0 0.861 84.7 54.2 -82.1 -39.3 -8.4 -1.1 9.4 68 68 A F S S+ 0 0 168 -38,-0.1 -1,-0.2 2,-0.0 6,-0.1 0.758 92.8 97.2 -65.9 -24.6 -6.0 1.9 9.4 69 69 A A - 0 0 3 -11,-0.1 2,-0.3 4,-0.1 -12,-0.2 -0.102 55.7-170.6 -61.1 164.0 -6.2 2.0 5.6 70 70 A C >> - 0 0 40 -14,-1.0 2,-3.1 0, 0.0 3,-1.1 -0.909 33.8-119.1-162.8 131.4 -8.6 4.4 3.9 71 71 A V T 34 S+ 0 0 89 -2,-0.3 -14,-0.2 1,-0.2 4,-0.1 -0.348 104.0 60.2 -70.3 66.8 -9.9 4.8 0.3 72 72 A E T 34 S- 0 0 123 -2,-3.1 -18,-3.7 -16,-0.3 -1,-0.2 0.339 123.2 -3.9-156.2 -43.1 -8.5 8.4 0.2 73 73 A S T <4 S+ 0 0 14 -3,-1.1 -24,-1.3 -20,-0.3 -2,-0.1 0.592 103.1 94.7-129.8 -42.0 -4.7 8.4 0.7 74 74 A T E < -D 48 0A 0 -4,-0.9 -19,-2.2 -26,-0.2 -18,-0.5 -0.161 51.6-168.2 -56.3 150.7 -3.7 4.8 1.5 75 75 A I E -D 47 0A 2 -28,-0.8 -28,-2.7 -21,-0.2 2,-0.7 -0.884 11.7-153.5-149.7 113.4 -2.5 2.6 -1.5 76 76 A L E +D 46 0A 16 -2,-0.3 -30,-0.3 -30,-0.3 2,-0.3 -0.781 39.1 134.1 -91.1 114.9 -1.9 -1.1 -1.4 77 77 A L E -D 45 0A 51 -32,-2.6 -32,-2.9 -2,-0.7 2,-0.2 -0.860 58.7 -59.0-146.9-180.0 0.7 -2.2 -4.0 78 78 A H E >> -D 44 0A 61 -2,-0.3 3,-2.1 -34,-0.2 4,-0.8 -0.450 42.0-129.1 -69.1 135.5 3.8 -4.4 -4.5 79 79 A I G >4 S+ 0 0 43 -36,-1.2 3,-1.7 1,-0.3 -1,-0.1 0.885 110.5 61.6 -50.2 -42.9 6.7 -3.6 -2.2 80 80 A N G 34 S+ 0 0 141 1,-0.3 -1,-0.3 -37,-0.1 -2,-0.0 0.785 99.1 57.7 -55.5 -26.9 8.9 -3.4 -5.3 81 81 A D G <4 S+ 0 0 54 -3,-2.1 -62,-2.2 -63,-0.1 -1,-0.3 0.762 91.4 89.5 -75.0 -25.8 6.7 -0.6 -6.4 82 82 A I E << -B 18 0A 7 -3,-1.7 -64,-0.3 -4,-0.8 -58,-0.0 -0.425 63.9-156.2 -73.5 147.4 7.5 1.3 -3.2 83 83 A I E -B 17 0A 58 -66,-2.9 -66,-2.5 -58,-0.2 -65,-0.1 -0.795 15.0-174.2-129.2 90.0 10.5 3.7 -3.2 84 84 A P E -B 16 0A 61 0, 0.0 -68,-0.2 0, 0.0 -74,-0.0 -0.005 20.3-140.6 -71.6-178.1 11.9 4.3 0.4 85 85 A E + 0 0 142 -70,-0.7 2,-0.3 -68,-0.0 -70,-0.0 -0.377 54.7 111.9-146.2 60.7 14.6 6.7 1.3 86 86 A S - 0 0 91 1,-0.1 -70,-0.0 0, 0.0 0, 0.0 -0.931 42.5-165.7-133.9 157.4 16.9 5.1 4.0 87 87 A S - 0 0 128 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.692 32.6-157.2-110.7 -33.1 20.4 3.8 4.2 88 88 A G - 0 0 55 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.271 40.0 -25.2 82.5-172.6 20.3 1.8 7.4 89 89 A P - 0 0 133 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.155 60.9-151.3 -69.9 168.3 23.3 0.8 9.6 90 90 A S + 0 0 122 1,-0.1 -2,-0.0 2,-0.0 -3,-0.0 -0.710 31.8 155.9-131.4-177.7 26.9 0.6 8.4 91 91 A S 0 0 120 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.154 360.0 360.0-176.1 -40.5 30.1 -1.3 9.2 92 92 A G 0 0 137 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.551 360.0 360.0 86.9 360.0 32.3 -1.5 6.2