==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-MAY-04 1WHQ . COMPND 2 MOLECULE: RNA HELICASE A; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7716.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 54.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 15.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -3 A G 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 123.9 -9.8 -11.3 -16.5 2 -2 A S + 0 0 130 2,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.232 360.0 81.9-129.4 43.4 -8.5 -9.7 -19.7 3 -1 A S - 0 0 113 2,-0.0 2,-0.1 0, 0.0 0, 0.0 -0.918 66.1-121.1-142.0 166.8 -6.0 -7.3 -18.3 4 0 A G - 0 0 59 -2,-0.3 2,-0.7 2,-0.0 -2,-0.1 -0.418 27.6-104.7-103.2-179.2 -2.4 -7.2 -17.1 5 1 A S + 0 0 79 -2,-0.1 2,-0.4 1,-0.0 6,-0.0 -0.865 47.0 153.7-112.6 99.1 -0.7 -6.1 -13.9 6 2 A S + 0 0 124 -2,-0.7 2,-0.3 79,-0.1 3,-0.1 -0.729 48.1 47.8-126.8 82.4 1.0 -2.8 -14.2 7 3 A G S S- 0 0 34 -2,-0.4 4,-0.4 1,-0.1 56,-0.0 -0.898 77.4-105.5 165.0 166.9 1.2 -1.1 -10.8 8 4 A I S > S+ 0 0 31 -2,-0.3 4,-1.5 2,-0.2 5,-0.1 0.768 114.3 54.7 -84.8 -28.7 2.1 -1.4 -7.1 9 5 A K H > S+ 0 0 92 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.951 104.7 51.0 -69.2 -51.1 -1.5 -1.5 -5.9 10 6 A N H > S+ 0 0 70 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.758 106.9 60.1 -58.3 -24.2 -2.5 -4.4 -8.2 11 7 A F H > S+ 0 0 15 -4,-0.4 4,-2.5 2,-0.2 -1,-0.2 0.974 107.8 39.4 -68.5 -56.8 0.5 -6.3 -6.8 12 8 A L H X S+ 0 0 2 -4,-1.5 4,-3.1 1,-0.2 5,-0.3 0.945 116.9 50.1 -58.5 -51.2 -0.6 -6.2 -3.1 13 9 A Y H X S+ 0 0 145 -4,-2.3 4,-2.8 1,-0.2 -1,-0.2 0.866 112.4 49.0 -56.1 -38.0 -4.2 -6.9 -3.9 14 10 A A H X S+ 0 0 53 -4,-1.5 4,-1.4 -5,-0.3 -1,-0.2 0.899 113.5 44.9 -69.2 -42.0 -3.1 -9.8 -6.1 15 11 A W H X S+ 0 0 18 -4,-2.5 4,-1.0 2,-0.2 -2,-0.2 0.860 118.8 43.3 -70.1 -36.4 -0.8 -11.2 -3.4 16 12 A C H <>S+ 0 0 2 -4,-3.1 5,-2.6 -5,-0.2 -2,-0.2 0.890 106.3 60.9 -76.0 -41.8 -3.5 -10.7 -0.7 17 13 A G H ><5S+ 0 0 44 -4,-2.8 3,-1.2 -5,-0.3 -2,-0.2 0.894 106.8 46.0 -52.0 -44.4 -6.4 -12.0 -2.8 18 14 A K H 3<5S+ 0 0 148 -4,-1.4 -1,-0.2 1,-0.3 -2,-0.2 0.852 110.9 52.8 -68.1 -35.2 -4.7 -15.4 -3.1 19 15 A R T 3<5S- 0 0 136 -4,-1.0 -1,-0.3 -5,-0.1 -2,-0.2 0.176 117.9-114.2 -85.9 18.1 -3.9 -15.5 0.6 20 16 A K T < 5S+ 0 0 192 -3,-1.2 2,-0.3 1,-0.2 -3,-0.2 0.911 76.4 126.0 49.2 49.1 -7.6 -14.7 1.2 21 17 A M < - 0 0 36 -5,-2.6 -1,-0.2 -8,-0.2 -2,-0.1 -0.919 47.0-155.3-134.4 160.1 -6.7 -11.3 2.7 22 18 A T - 0 0 112 -2,-0.3 23,-0.3 -3,-0.1 2,-0.1 -0.949 16.9-133.7-142.6 118.9 -7.7 -7.7 2.1 23 19 A P - 0 0 14 0, 0.0 2,-0.6 0, 0.0 21,-0.2 -0.388 16.2-141.7 -69.9 144.1 -5.7 -4.6 3.0 24 20 A A E -A 43 0A 60 19,-1.6 19,-1.3 -2,-0.1 2,-0.4 -0.936 13.1-162.3-113.7 117.5 -7.3 -1.7 4.8 25 21 A Y E -A 42 0A 44 -2,-0.6 2,-0.4 17,-0.2 17,-0.2 -0.801 7.3-176.1-100.3 137.9 -6.4 1.8 3.8 26 22 A E E -A 41 0A 108 15,-0.8 15,-1.7 -2,-0.4 2,-0.3 -0.971 11.3-151.9-137.7 120.8 -7.1 4.8 6.0 27 23 A I E -A 40 0A 64 -2,-0.4 2,-0.3 13,-0.2 13,-0.2 -0.683 15.5-172.6 -92.1 143.6 -6.5 8.5 5.1 28 24 A R E -A 39 0A 122 11,-1.7 11,-1.2 -2,-0.3 2,-0.5 -0.900 22.1-120.0-132.6 161.2 -5.7 11.1 7.8 29 25 A A E +A 38 0A 71 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.897 44.3 143.8-106.9 126.2 -5.3 14.9 7.9 30 26 A V E +A 37 0A 51 7,-1.7 7,-1.8 -2,-0.5 2,-0.2 -0.916 26.1 55.1-149.3 173.7 -2.1 16.4 9.1 31 27 A G E S-A 36 0A 56 -2,-0.3 5,-0.2 5,-0.2 2,-0.2 -0.669 83.8 -43.3 100.5-156.2 0.3 19.3 8.6 32 28 A N - 0 0 119 3,-2.0 5,-0.1 -2,-0.2 -2,-0.1 -0.501 50.3-104.8-107.7 178.5 -0.4 23.0 8.6 33 29 A K S S+ 0 0 186 -2,-0.2 3,-0.2 1,-0.2 -1,-0.1 0.962 119.3 44.1 -68.0 -53.6 -3.2 25.2 7.2 34 30 A N S S+ 0 0 156 1,-0.2 2,-0.6 -3,-0.0 -1,-0.2 0.926 125.8 33.5 -57.2 -47.8 -1.1 26.6 4.3 35 31 A R S S- 0 0 204 2,-0.0 -3,-2.0 0, 0.0 -1,-0.2 -0.923 78.9-172.5-117.2 108.3 0.3 23.2 3.5 36 32 A Q E -A 31 0A 107 -2,-0.6 2,-0.3 -3,-0.2 -5,-0.2 -0.600 1.1-166.9 -96.9 159.0 -2.0 20.2 4.1 37 33 A K E -A 30 0A 74 -7,-1.8 -7,-1.7 -2,-0.2 2,-0.5 -0.964 16.4-140.5-143.1 158.8 -1.1 16.5 3.8 38 34 A F E -AB 29 55A 43 17,-0.9 17,-0.8 -2,-0.3 2,-0.5 -0.909 15.5-161.9-127.0 104.4 -2.8 13.2 3.7 39 35 A M E -AB 28 54A 81 -11,-1.2 -11,-1.7 -2,-0.5 2,-0.5 -0.728 7.5-165.6 -88.0 127.2 -1.2 10.3 5.7 40 36 A C E -AB 27 53A 1 13,-2.7 13,-2.5 -2,-0.5 2,-0.5 -0.949 3.7-168.8-117.2 130.2 -2.4 6.8 4.6 41 37 A E E -AB 26 52A 74 -15,-1.7 -15,-0.8 -2,-0.5 2,-0.5 -0.970 4.7-159.4-121.6 126.8 -1.8 3.7 6.7 42 38 A V E -AB 25 51A 0 9,-2.6 9,-1.0 -2,-0.5 2,-0.4 -0.894 9.0-171.3-107.9 130.5 -2.3 0.1 5.5 43 39 A R E -A 24 0A 166 -19,-1.3 -19,-1.6 -2,-0.5 2,-0.4 -0.928 6.9-164.6-121.7 145.1 -2.8 -2.8 7.9 44 40 A V > - 0 0 7 5,-0.5 3,-2.2 -2,-0.4 -2,-0.0 -0.958 28.2-115.6-133.4 115.9 -3.0 -6.5 7.2 45 41 A E T 3 S+ 0 0 170 -2,-0.4 3,-0.1 -23,-0.3 -23,-0.0 -0.094 101.3 31.3 -45.8 139.3 -4.3 -9.1 9.7 46 42 A G T 3 S+ 0 0 76 1,-0.3 2,-0.3 2,-0.0 -1,-0.3 -0.079 107.1 82.0 100.4 -34.1 -1.6 -11.5 10.8 47 43 A F < - 0 0 46 -3,-2.2 -1,-0.3 1,-0.1 -3,-0.2 -0.733 60.6-155.7-105.7 155.0 1.3 -9.0 10.4 48 44 A N S S+ 0 0 157 -2,-0.3 -1,-0.1 -3,-0.1 -3,-0.0 0.839 70.9 84.4 -93.8 -42.4 2.4 -6.3 12.9 49 45 A Y - 0 0 87 -6,-0.1 -5,-0.5 20,-0.1 2,-0.4 -0.248 64.7-154.4 -61.9 149.4 4.1 -3.9 10.5 50 46 A A - 0 0 29 -7,-0.1 -7,-0.2 18,-0.0 2,-0.1 -0.982 19.7-115.5-133.6 123.1 1.8 -1.4 8.7 51 47 A G E -B 42 0A 0 -9,-1.0 -9,-2.6 -2,-0.4 2,-0.5 -0.313 30.9-153.5 -57.0 127.4 2.6 0.3 5.3 52 48 A M E -B 41 0A 95 -11,-0.2 2,-0.4 13,-0.1 -11,-0.2 -0.906 14.3-178.9-109.5 130.0 3.0 4.0 5.7 53 49 A G E -B 40 0A 6 -13,-2.5 -13,-2.7 -2,-0.5 2,-0.4 -0.991 6.5-172.3-132.3 134.1 2.4 6.4 2.9 54 50 A N E +B 39 0A 38 -2,-0.4 2,-0.3 -15,-0.2 -15,-0.2 -0.985 21.9 135.3-127.4 132.3 2.7 10.2 2.7 55 51 A S E -B 38 0A 21 -17,-0.8 -17,-0.9 -2,-0.4 6,-0.2 -0.864 56.3-123.2-173.6 136.9 1.6 12.5 -0.2 56 52 A T S S+ 0 0 78 -2,-0.3 2,-0.3 -19,-0.2 -1,-0.1 0.798 101.5 61.9 -53.1 -29.6 -0.3 15.8 -0.6 57 53 A N S > S- 0 0 83 1,-0.1 4,-2.1 -19,-0.1 -19,-0.1 -0.722 77.9-140.3-101.2 151.0 -2.7 13.8 -2.8 58 54 A K H > S+ 0 0 114 -2,-0.3 4,-2.5 2,-0.2 5,-0.2 0.929 101.5 55.9 -72.7 -47.4 -4.9 10.9 -1.7 59 55 A K H > S+ 0 0 162 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.913 114.9 39.6 -50.8 -48.3 -4.4 8.9 -4.9 60 56 A D H > S+ 0 0 76 2,-0.2 4,-2.9 1,-0.2 5,-0.2 0.959 109.5 58.5 -67.5 -52.8 -0.7 9.0 -4.4 61 57 A A H X S+ 0 0 0 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.867 107.0 50.5 -43.9 -44.1 -0.7 8.5 -0.6 62 58 A Q H X S+ 0 0 47 -4,-2.5 4,-1.8 2,-0.2 -1,-0.2 0.953 110.3 47.4 -61.5 -52.1 -2.6 5.2 -1.2 63 59 A S H X S+ 0 0 49 -4,-1.6 4,-2.0 -5,-0.2 -2,-0.2 0.907 112.5 50.8 -56.4 -44.4 -0.1 4.0 -3.8 64 60 A N H X S+ 0 0 62 -4,-2.9 4,-2.2 1,-0.2 -1,-0.2 0.954 103.8 57.3 -59.1 -53.0 2.8 4.9 -1.5 65 61 A A H X S+ 0 0 0 -4,-2.5 4,-2.0 -5,-0.2 -1,-0.2 0.903 109.0 47.0 -43.9 -52.5 1.3 3.1 1.5 66 62 A A H X S+ 0 0 0 -4,-1.8 4,-2.6 1,-0.2 5,-0.2 0.978 106.9 54.0 -55.3 -63.5 1.2 -0.2 -0.4 67 63 A R H X S+ 0 0 115 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.832 108.5 54.3 -40.3 -39.9 4.7 0.0 -1.8 68 64 A D H X S+ 0 0 30 -4,-2.2 4,-1.5 2,-0.2 3,-0.5 0.975 107.8 45.5 -61.0 -58.1 5.8 0.5 1.8 69 65 A F H X S+ 0 0 0 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.876 107.3 61.5 -53.7 -40.2 4.1 -2.7 3.1 70 66 A V H X S+ 0 0 0 -4,-2.6 4,-1.9 1,-0.2 -1,-0.2 0.922 101.5 51.1 -53.0 -48.9 5.5 -4.6 0.1 71 67 A N H X S+ 0 0 72 -4,-1.7 4,-1.8 -3,-0.5 -1,-0.2 0.908 107.4 53.7 -56.3 -44.6 9.1 -3.9 1.1 72 68 A Y H X S+ 0 0 55 -4,-1.5 4,-2.5 1,-0.2 -1,-0.2 0.904 105.0 54.9 -57.7 -43.6 8.4 -5.2 4.6 73 69 A L H X>S+ 0 0 0 -4,-2.1 5,-3.2 1,-0.2 4,-0.6 0.942 105.5 51.3 -55.6 -51.9 7.0 -8.4 3.2 74 70 A V H ><5S+ 0 0 55 -4,-1.9 3,-0.8 3,-0.2 -1,-0.2 0.894 110.4 50.3 -53.1 -43.5 10.2 -9.1 1.3 75 71 A R H 3<5S+ 0 0 180 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.953 109.5 48.0 -60.9 -52.4 12.3 -8.5 4.5 76 72 A I H 3<5S- 0 0 34 -4,-2.5 -1,-0.3 -5,-0.1 -2,-0.2 0.523 119.1-115.0 -67.3 -3.2 10.2 -10.9 6.5 77 73 A N T <<5S+ 0 0 141 -3,-0.8 -3,-0.2 -4,-0.6 -2,-0.1 0.849 82.9 123.2 71.2 35.2 10.6 -13.3 3.6 78 74 A E S > - 0 0 143 -2,-0.4 3,-2.4 1,-0.1 4,-0.8 -0.706 17.8-130.5 -91.1 138.6 9.9 -12.5 -3.4 81 77 A S T 34 S+ 0 0 86 -2,-0.3 3,-0.4 1,-0.3 -1,-0.1 0.816 102.3 79.4 -53.9 -31.6 11.1 -9.5 -5.3 82 78 A E T 34 S+ 0 0 155 1,-0.3 -1,-0.3 3,-0.0 -3,-0.0 0.781 98.8 42.6 -47.8 -28.3 10.7 -11.6 -8.4 83 79 A E T <4 S+ 0 0 100 -3,-2.4 -1,-0.3 2,-0.1 -2,-0.2 0.782 96.2 93.8 -88.9 -31.7 7.0 -10.8 -8.1 84 80 A V S < S- 0 0 37 -4,-0.8 -76,-0.1 -3,-0.4 2,-0.0 -0.362 83.1-111.1 -65.1 138.7 7.5 -7.1 -7.2 85 81 A P - 0 0 55 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.313 36.6 -96.1 -69.7 152.6 7.3 -4.7 -10.2 86 82 A A - 0 0 102 1,-0.1 2,-0.8 -2,-0.0 0, 0.0 -0.182 37.8-107.2 -65.2 161.2 10.4 -2.9 -11.5 87 83 A V + 0 0 116 1,-0.2 -1,-0.1 3,-0.0 3,-0.0 -0.823 58.1 140.0 -97.0 107.9 11.2 0.7 -10.4 88 84 A G + 0 0 65 -2,-0.8 -1,-0.2 -3,-0.0 -2,-0.0 0.755 46.6 81.5-112.2 -43.7 10.6 3.1 -13.2 89 85 A I - 0 0 130 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.320 58.6-159.5 -66.3 148.2 9.0 6.2 -11.5 90 86 A V - 0 0 134 -2,-0.0 -1,-0.1 -3,-0.0 -3,-0.0 -0.728 12.5-172.1-134.5 85.0 11.3 8.7 -9.8 91 87 A P - 0 0 94 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.124 36.7 -76.9 -69.8 169.6 9.5 10.9 -7.3 92 88 A P - 0 0 101 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.342 30.3-128.0 -69.8 148.3 10.9 13.9 -5.5 93 89 A P + 0 0 127 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.657 65.3 132.6 -69.7 -15.9 13.4 13.4 -2.5 94 90 A S + 0 0 114 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.121 45.8 81.2 -41.7 94.3 11.2 15.8 -0.5 95 91 A G > - 0 0 27 -2,-0.3 3,-1.0 4,-0.1 2,-0.9 0.046 66.1-148.3 157.9 83.3 11.0 13.6 2.6 96 92 A P T 3 S- 0 0 125 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.531 86.9 -28.6 -69.8 101.0 13.7 13.4 5.3 97 93 A S T 3 S+ 0 0 139 -2,-0.9 -2,-0.0 1,-0.1 0, 0.0 0.932 114.0 110.6 55.9 49.4 13.6 9.9 6.6 98 94 A S < 0 0 37 -3,-1.0 -1,-0.1 -44,-0.0 -46,-0.1 0.707 360.0 360.0-117.0 -46.9 9.9 9.6 5.8 99 95 A G 0 0 92 -4,-0.5 -4,-0.1 -46,-0.1 -47,-0.0 0.280 360.0 360.0 178.7 360.0 9.5 7.2 2.9