==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 28-MAY-04 1WHU . COMPND 2 MOLECULE: POLYNUCLEOTIDE PHOSPHORYLASE; 3'-5' RNA . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8603.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 19 18.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 50 48.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 267 A G 0 0 131 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.8 21.2 23.5 -5.0 2 268 A S - 0 0 109 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.977 360.0-178.2-152.1 161.4 20.5 21.0 -7.8 3 269 A S + 0 0 114 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.983 37.8 63.9-157.7 162.5 17.7 19.5 -9.9 4 270 A G - 0 0 66 -2,-0.3 2,-0.5 1,-0.0 -1,-0.1 0.430 69.1-103.2 90.2 131.3 17.0 17.0 -12.6 5 271 A S + 0 0 97 3,-0.0 2,-0.2 6,-0.0 5,-0.1 -0.765 58.2 131.8 -91.8 126.9 17.5 13.2 -12.6 6 272 A S - 0 0 93 -2,-0.5 3,-0.5 3,-0.2 4,-0.0 -0.762 53.0 -2.5-175.0 124.5 20.5 11.9 -14.4 7 273 A G S S- 0 0 64 -2,-0.2 -1,-0.1 1,-0.2 0, 0.0 -0.425 112.9 -32.1 89.7-166.8 23.3 9.5 -13.6 8 274 A P S S+ 0 0 138 0, 0.0 2,-0.4 0, 0.0 -1,-0.2 0.428 96.7 128.4 -69.7 2.8 24.0 7.6 -10.3 9 275 A Q - 0 0 144 -3,-0.5 -3,-0.2 1,-0.1 -2,-0.0 -0.483 55.5-138.7 -66.0 116.2 22.5 10.6 -8.6 10 276 A K - 0 0 169 -2,-0.4 2,-0.3 1,-0.1 -4,-0.1 -0.156 16.3-112.4 -69.7 169.0 19.8 9.4 -6.2 11 277 A I - 0 0 96 1,-0.1 2,-0.1 -6,-0.1 -1,-0.1 -0.694 29.4-100.0-104.7 158.3 16.5 11.1 -5.7 12 278 A F - 0 0 161 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.443 36.9-121.0 -75.6 148.4 15.1 12.9 -2.6 13 279 A T - 0 0 114 1,-0.1 3,-0.1 -2,-0.1 -1,-0.1 -0.561 24.6-113.4 -90.0 154.3 12.7 11.2 -0.3 14 280 A P - 0 0 23 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.140 54.9 -54.8 -69.8-168.9 9.1 12.4 0.5 15 281 A S > - 0 0 33 55,-0.2 4,-1.8 1,-0.1 5,-0.1 -0.558 39.5-156.9 -76.1 132.5 7.8 13.6 3.8 16 282 A A H > S+ 0 0 70 -2,-0.3 4,-2.5 2,-0.2 5,-0.3 0.917 87.8 67.3 -73.9 -45.5 8.3 11.2 6.7 17 283 A E H > S+ 0 0 100 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.868 111.5 36.1 -41.4 -46.3 5.5 12.7 8.9 18 284 A I H >> S+ 0 0 0 2,-0.2 4,-2.3 1,-0.2 3,-1.0 0.978 108.1 61.3 -73.3 -59.8 3.1 11.4 6.3 19 285 A V H 3X S+ 0 0 19 -4,-1.8 4,-0.7 1,-0.3 -2,-0.2 0.814 105.6 52.7 -35.0 -41.5 4.8 8.1 5.3 20 286 A K H >X S+ 0 0 143 -4,-2.5 3,-1.1 1,-0.2 4,-1.0 0.940 110.6 43.9 -63.7 -48.9 4.3 7.1 9.0 21 287 A Y H S+ 0 0 67 -3,-1.1 4,-2.4 -4,-0.7 5,-0.7 0.900 99.4 58.5 -77.1 -43.4 1.3 2.8 7.3 24 290 A I H <5S+ 0 0 99 -4,-1.0 4,-0.4 3,-0.2 -1,-0.2 0.819 123.8 25.3 -55.7 -31.7 -1.5 3.0 9.8 25 291 A I H X5S+ 0 0 12 -4,-0.9 4,-1.9 3,-0.1 5,-0.3 0.858 126.1 45.5 -98.0 -51.5 -3.9 3.1 6.9 26 292 A A H X5S+ 0 0 0 -4,-2.8 4,-3.0 -5,-0.2 5,-0.3 0.923 114.7 50.3 -59.0 -46.9 -2.0 1.4 4.1 27 293 A M H X5S+ 0 0 65 -4,-2.4 4,-3.2 -5,-0.3 5,-0.4 0.986 109.9 46.8 -55.1 -69.2 -0.9 -1.4 6.4 28 294 A E H >X S+ 0 0 71 -4,-1.9 4,-2.8 2,-0.2 3,-0.6 0.979 113.1 53.8 -54.0 -65.6 -5.9 -2.3 4.4 30 296 A L H 3X S+ 0 0 5 -4,-3.0 4,-1.9 1,-0.3 -1,-0.2 0.833 116.1 42.4 -38.0 -42.1 -3.1 -3.9 2.5 31 297 A Y H 3X S+ 0 0 74 -4,-3.2 4,-2.2 -5,-0.3 -1,-0.3 0.851 112.0 53.2 -76.0 -36.0 -3.2 -6.7 5.0 32 298 A A H << S+ 0 0 62 -4,-2.6 4,-0.4 -3,-0.6 -2,-0.2 0.776 115.7 41.1 -69.4 -26.7 -7.0 -6.8 5.0 33 299 A V H < S+ 0 0 14 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.806 113.9 51.6 -89.2 -34.6 -6.9 -7.1 1.2 34 300 A F H < S+ 0 0 33 -4,-1.9 -2,-0.2 -5,-0.4 -3,-0.2 0.952 105.1 54.2 -67.1 -51.3 -4.0 -9.6 1.1 35 301 A T S < S+ 0 0 88 -4,-2.2 -1,-0.2 -5,-0.1 3,-0.2 0.839 119.2 37.1 -52.0 -35.4 -5.5 -12.0 3.6 36 302 A D S S+ 0 0 93 -4,-0.4 -3,-0.0 -5,-0.2 0, 0.0 -0.466 87.7 62.7-109.3-177.3 -8.6 -12.2 1.4 37 303 A Y + 0 0 91 -2,-0.2 7,-0.3 6,-0.0 -1,-0.2 0.852 63.2 133.5 68.3 35.4 -9.2 -12.1 -2.4 38 304 A E + 0 0 137 -3,-0.2 -2,-0.1 1,-0.1 6,-0.1 0.946 66.5 48.1 -79.8 -54.0 -7.3 -15.4 -2.8 39 305 A H S S+ 0 0 173 2,-0.0 2,-0.3 4,-0.0 -1,-0.1 0.928 110.0 59.7 -52.2 -50.5 -9.8 -17.2 -5.1 40 306 A D - 0 0 95 1,-0.1 4,-0.3 2,-0.1 0, 0.0 -0.614 64.0-165.4 -84.3 140.5 -10.1 -14.2 -7.3 41 307 A K S > S+ 0 0 181 -2,-0.3 4,-0.6 2,-0.1 -1,-0.1 0.834 91.7 36.0 -90.9 -39.5 -7.0 -12.8 -9.1 42 308 A V H > S+ 0 0 102 2,-0.2 4,-1.9 1,-0.2 3,-0.5 0.851 103.0 72.0 -81.5 -37.7 -8.4 -9.5 -10.2 43 309 A S H > S+ 0 0 42 1,-0.3 4,-1.0 2,-0.2 -1,-0.2 0.834 106.4 40.2 -46.1 -36.6 -10.6 -9.0 -7.1 44 310 A R H > S+ 0 0 95 -7,-0.3 4,-2.4 -4,-0.3 -1,-0.3 0.756 104.4 68.0 -84.5 -27.3 -7.3 -8.3 -5.2 45 311 A D H X S+ 0 0 105 -4,-0.6 4,-1.6 -3,-0.5 -2,-0.2 0.905 109.1 36.1 -58.4 -43.6 -5.8 -6.3 -8.1 46 312 A E H X S+ 0 0 74 -4,-1.9 4,-3.0 2,-0.2 -1,-0.2 0.838 111.9 60.8 -78.6 -35.2 -8.3 -3.5 -7.5 47 313 A A H X S+ 0 0 7 -4,-1.0 4,-1.0 -5,-0.4 -2,-0.2 0.905 110.9 40.2 -58.2 -43.8 -8.3 -4.0 -3.8 48 314 A V H >X S+ 0 0 42 -4,-2.4 4,-0.9 2,-0.2 3,-0.8 0.987 119.6 41.8 -69.3 -61.8 -4.6 -3.2 -3.6 49 315 A N H >X S+ 0 0 81 -4,-1.6 4,-0.9 -5,-0.3 3,-0.7 0.915 103.1 70.2 -51.9 -47.9 -4.5 -0.3 -6.2 50 316 A K H >X S+ 0 0 117 -4,-3.0 4,-2.0 1,-0.3 3,-2.0 0.864 93.7 57.0 -36.0 -53.1 -7.7 1.1 -4.8 51 317 A I H S+ 0 0 7 -4,-1.0 4,-2.0 -3,-0.8 5,-0.7 0.926 93.6 65.1 -46.5 -55.6 -5.8 2.1 -1.7 52 318 A R H X5S+ 0 0 74 -4,-2.0 3,-1.9 -5,-0.2 4,-1.1 0.991 112.7 44.3 -66.9 -63.4 -8.0 6.1 -1.1 55 321 A T H >X5S+ 0 0 0 -4,-2.0 4,-2.8 1,-0.3 3,-1.1 0.886 105.9 63.6 -48.6 -44.6 -4.9 6.9 1.1 56 322 A E H 3XX S+ 0 0 0 -4,-2.8 4,-2.3 -5,-0.2 3,-1.2 0.899 110.6 55.1 -94.4 -61.1 -3.3 11.9 3.6 60 326 A K T 3< S+ 0 0 107 -4,-1.2 -3,-0.1 -5,-0.3 -2,-0.1 0.734 109.6 55.6 -45.9 -22.7 -3.4 15.0 1.3 61 327 A E T 34 S+ 0 0 131 1,-0.1 -1,-0.3 -4,-0.1 -2,-0.2 0.884 106.1 46.6 -79.1 -41.6 -6.3 15.9 3.6 62 328 A K T <4 S+ 0 0 117 -3,-1.2 -2,-0.2 -4,-0.5 -1,-0.1 0.842 118.8 43.7 -69.0 -33.9 -4.4 15.7 6.8 63 329 A F < + 0 0 22 -4,-2.3 -1,-0.3 1,-0.1 8,-0.1 -0.744 61.9 163.0-116.6 83.0 -1.5 17.7 5.3 64 330 A P S S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.730 80.7 51.2 -69.8 -22.8 -3.0 20.6 3.4 65 331 A E S S+ 0 0 172 -3,-0.1 -2,-0.1 2,-0.1 -5,-0.0 0.784 94.4 88.5 -84.4 -30.5 0.4 22.3 3.4 66 332 A V S S- 0 0 20 1,-0.1 2,-0.2 -6,-0.1 -3,-0.0 -0.231 86.0-104.4 -66.4 157.9 2.2 19.3 2.0 67 333 A D >> - 0 0 97 1,-0.1 3,-1.9 2,-0.0 4,-0.7 -0.560 18.6-123.7 -85.6 149.4 2.6 18.7 -1.7 68 334 A Q H >> S+ 0 0 92 1,-0.3 4,-1.3 2,-0.2 3,-0.8 0.825 113.3 61.9 -59.1 -32.1 0.5 16.1 -3.6 69 335 A F H 3> S+ 0 0 88 1,-0.2 4,-0.9 2,-0.2 -1,-0.3 0.650 99.9 56.0 -68.9 -14.3 3.8 14.5 -4.8 70 336 A E H <4 S+ 0 0 39 -3,-1.9 4,-0.3 2,-0.1 -1,-0.2 0.685 104.2 51.5 -89.5 -21.6 4.6 13.9 -1.1 71 337 A I H X S+ 0 0 43 -4,-1.3 4,-1.5 2,-0.2 3,-0.8 0.937 115.5 46.3 -88.1 -69.9 2.0 9.6 -3.4 73 339 A E H 3X S+ 0 0 75 -4,-0.9 4,-1.2 1,-0.3 -3,-0.1 0.812 112.0 58.4 -42.8 -34.8 5.7 9.0 -3.7 74 340 A S H 3> S+ 0 0 0 -4,-0.3 4,-1.5 -5,-0.2 3,-0.4 0.947 100.8 53.0 -62.8 -50.7 5.5 8.4 0.1 75 341 A F H XX S+ 0 0 13 -3,-0.8 4,-2.9 -4,-0.7 3,-0.9 0.936 99.2 63.4 -49.9 -54.4 2.9 5.6 -0.2 76 342 A N H 3X S+ 0 0 59 -4,-1.5 4,-1.8 1,-0.3 5,-0.3 0.877 104.9 46.2 -36.6 -55.7 5.1 3.7 -2.7 77 343 A I H 3X S+ 0 0 63 -4,-1.2 4,-1.4 -3,-0.4 -1,-0.3 0.869 113.7 50.4 -58.5 -38.1 7.8 3.3 0.0 78 344 A V H X S+ 0 0 14 -4,-2.9 4,-2.0 1,-0.2 3,-0.8 0.956 109.4 46.4 -46.8 -67.4 3.5 -0.4 0.2 80 346 A K H 3X S+ 0 0 122 -4,-1.8 4,-1.9 1,-0.3 -1,-0.2 0.847 108.9 59.6 -45.4 -39.2 6.7 -2.3 -0.5 81 347 A E H 3X S+ 0 0 81 -4,-1.4 4,-1.4 -5,-0.3 -1,-0.3 0.935 108.5 42.5 -56.8 -49.7 7.4 -2.1 3.3 82 348 A V H XX S+ 0 0 0 -4,-2.1 4,-2.0 -3,-0.8 3,-0.8 0.983 107.8 58.1 -61.4 -60.7 4.2 -4.0 4.1 83 349 A F H >X S+ 0 0 75 -4,-2.0 4,-2.1 1,-0.3 3,-0.9 0.873 103.9 53.4 -34.4 -60.0 4.5 -6.6 1.4 84 350 A R H 3X S+ 0 0 177 -4,-1.9 4,-0.6 1,-0.3 3,-0.5 0.904 108.3 49.4 -44.3 -51.9 7.9 -7.7 2.8 85 351 A S H X< S+ 0 0 58 -4,-1.4 3,-0.7 -3,-0.8 -1,-0.3 0.835 110.3 51.9 -58.9 -33.3 6.3 -8.2 6.2 86 352 A I H X< S+ 0 0 10 -4,-2.0 3,-1.5 -3,-0.9 -1,-0.3 0.796 99.8 62.3 -73.8 -29.2 3.5 -10.2 4.5 87 353 A I H >< S+ 0 0 57 -4,-2.1 3,-0.9 -3,-0.5 -1,-0.2 0.629 90.1 70.4 -71.0 -12.7 6.1 -12.4 2.8 88 354 A L T << S+ 0 0 88 -3,-0.7 -1,-0.3 -4,-0.6 -2,-0.2 0.597 103.6 41.4 -79.2 -11.3 7.2 -13.5 6.3 89 355 A N T < S+ 0 0 147 -3,-1.5 2,-0.2 1,-0.2 -1,-0.2 0.005 120.7 38.5-123.2 25.8 3.9 -15.4 6.7 90 356 A E S < S+ 0 0 70 -3,-0.9 -1,-0.2 3,-0.0 3,-0.1 -0.828 112.6 13.8-175.1 133.7 3.7 -16.9 3.2 91 357 A Y S S+ 0 0 222 1,-0.2 2,-0.2 -2,-0.2 -4,-0.1 0.866 99.5 112.4 65.2 37.1 6.1 -18.3 0.6 92 358 A K - 0 0 101 -4,-0.1 2,-0.3 0, 0.0 -1,-0.2 -0.753 55.3-140.4-130.5 177.6 8.9 -18.6 3.2 93 359 A R S S- 0 0 220 -2,-0.2 -3,-0.0 -3,-0.1 0, 0.0 -0.990 76.4 -2.2-147.0 134.4 10.8 -21.3 5.1 94 360 A C + 0 0 128 -2,-0.3 -1,-0.1 1,-0.1 3,-0.1 0.900 69.5 171.8 54.0 44.1 12.0 -21.6 8.7 95 361 A D - 0 0 90 1,-0.1 -1,-0.1 -7,-0.1 -6,-0.0 0.912 63.0 -64.0 -48.4 -49.9 10.6 -18.1 9.4 96 362 A G - 0 0 42 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.035 49.6-122.1 154.1 90.7 11.3 -18.6 13.1 97 363 A R - 0 0 249 1,-0.1 2,-0.3 -3,-0.1 0, 0.0 0.071 29.6-143.7 -41.2 155.9 9.7 -21.2 15.4 98 364 A D - 0 0 117 1,-0.1 4,-0.1 2,-0.0 -1,-0.1 -0.969 22.8-172.6-131.6 146.4 7.9 -19.8 18.4 99 365 A S S S+ 0 0 133 -2,-0.3 -1,-0.1 2,-0.1 3,-0.1 0.765 75.5 34.0-103.4 -38.1 7.5 -21.0 22.0 100 366 A G S S- 0 0 50 1,-0.2 2,-0.2 2,-0.0 -2,-0.0 -0.084 111.0 -37.8-101.0-157.7 5.0 -18.6 23.4 101 367 A P - 0 0 122 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 -0.476 43.6-168.8 -69.8 130.7 2.0 -16.7 21.9 102 368 A S S S+ 0 0 97 1,-0.3 2,-0.8 -2,-0.2 -2,-0.0 0.928 80.0 36.3 -84.1 -52.7 2.4 -15.5 18.4 103 369 A S 0 0 128 1,-0.0 -1,-0.3 0, 0.0 0, 0.0 -0.826 360.0 360.0-107.4 95.3 -0.7 -13.3 18.0 104 370 A G 0 0 119 -2,-0.8 -1,-0.0 -3,-0.2 0, 0.0 -0.670 360.0 360.0-141.9 360.0 -1.3 -11.5 21.3