==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-MAY-04 1WHW . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1200009A02; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7050.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 21.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 30 A G 0 0 139 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 152.4 -20.2 15.2 -3.3 2 31 A S - 0 0 111 1,-0.1 3,-0.1 3,-0.0 0, 0.0 -0.913 360.0-119.2-125.5 152.0 -17.4 17.4 -4.6 3 32 A S - 0 0 132 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.939 65.5-110.0 -51.0 -54.2 -14.2 16.6 -6.6 4 33 A G - 0 0 54 -3,-0.1 2,-0.4 2,-0.0 -1,-0.2 -0.817 21.8 -87.8 143.8 176.6 -12.0 17.9 -3.8 5 34 A S - 0 0 126 -2,-0.2 -3,-0.0 -3,-0.1 0, 0.0 -0.957 35.0-115.5-126.0 142.9 -9.6 20.7 -2.8 6 35 A S + 0 0 95 -2,-0.4 89,-0.1 1,-0.2 53,-0.0 -0.244 64.4 104.5 -69.9 161.0 -5.8 21.0 -3.3 7 36 A G S S+ 0 0 74 79,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.248 78.6 6.2 166.0 -67.4 -3.4 21.1 -0.4 8 37 A S - 0 0 45 2,-0.1 50,-0.1 51,-0.0 77,-0.1 -0.991 46.5-144.8-148.8 136.9 -1.4 17.9 0.2 9 38 A G E +A 57 0A 3 48,-0.9 48,-2.7 -2,-0.3 2,-0.2 0.024 54.8 139.7 -88.7 28.9 -1.0 14.7 -1.7 10 39 A R E +A 56 0A 83 46,-0.3 75,-0.8 75,-0.1 2,-0.3 -0.488 26.5 178.9 -75.1 141.7 -0.7 12.7 1.6 11 40 A L E -AB 55 84A 15 44,-1.6 44,-1.4 -2,-0.2 2,-0.7 -0.991 27.5-129.5-147.6 136.3 -2.5 9.4 1.8 12 41 A F E -AB 54 83A 45 71,-2.3 71,-2.3 -2,-0.3 2,-0.3 -0.762 31.2-175.6 -89.3 114.0 -2.7 6.7 4.5 13 42 A V E +AB 53 82A 1 40,-1.7 40,-1.8 -2,-0.7 2,-0.3 -0.852 6.9 166.2-111.6 146.4 -1.9 3.3 3.2 14 43 A R E +AB 52 81A 112 67,-1.8 67,-1.9 -2,-0.3 38,-0.3 -0.900 42.8 64.0-147.3 174.4 -2.0 -0.1 5.0 15 44 A N + 0 0 46 36,-2.0 2,-0.5 -2,-0.3 37,-0.2 0.964 60.6 173.2 70.7 54.7 -2.0 -3.8 4.4 16 45 A L - 0 0 2 35,-1.3 -1,-0.2 -3,-0.1 2,-0.1 -0.847 32.8-121.0-100.3 126.1 1.6 -4.1 3.1 17 46 A S > - 0 0 11 -2,-0.5 3,-2.8 58,-0.4 34,-0.1 -0.410 13.7-132.1 -65.3 132.7 3.0 -7.5 2.5 18 47 A Y T 3 S+ 0 0 132 1,-0.3 -1,-0.2 -2,-0.1 58,-0.0 0.621 107.0 68.1 -60.2 -10.6 6.2 -8.2 4.4 19 48 A T T 3 S+ 0 0 82 57,-0.2 -1,-0.3 29,-0.1 2,-0.2 0.564 82.4 95.9 -85.2 -9.9 7.6 -9.4 1.1 20 49 A S < - 0 0 6 -3,-2.8 2,-0.4 55,-0.1 -4,-0.0 -0.509 65.3-144.7 -82.3 150.4 7.4 -5.9 -0.3 21 50 A S > - 0 0 63 -2,-0.2 4,-1.8 1,-0.1 3,-0.4 -0.925 28.1-111.0-119.1 142.0 10.5 -3.6 -0.3 22 51 A E H > S+ 0 0 108 -2,-0.4 4,-1.6 1,-0.3 -1,-0.1 0.787 123.7 49.8 -34.8 -35.7 10.7 0.1 0.2 23 52 A E H > S+ 0 0 118 2,-0.2 4,-1.9 1,-0.2 5,-0.3 0.956 101.9 57.7 -71.8 -52.6 11.7 0.1 -3.5 24 53 A D H > S+ 0 0 45 -3,-0.4 4,-2.1 1,-0.2 -2,-0.2 0.878 109.7 47.2 -44.4 -45.7 8.8 -2.1 -4.7 25 54 A L H X S+ 0 0 0 -4,-1.8 4,-2.7 2,-0.2 5,-0.5 0.939 103.2 61.2 -63.8 -48.6 6.4 0.5 -3.3 26 55 A E H X S+ 0 0 84 -4,-1.6 4,-2.7 -5,-0.3 -1,-0.2 0.881 111.2 40.8 -45.0 -45.7 8.2 3.4 -4.8 27 56 A K H X S+ 0 0 130 -4,-1.9 4,-2.1 2,-0.2 -1,-0.2 0.901 109.8 58.9 -71.5 -42.3 7.5 2.0 -8.2 28 57 A L H < S+ 0 0 29 -4,-2.1 4,-0.4 -5,-0.3 -2,-0.2 0.931 121.9 24.9 -52.1 -51.3 4.0 0.9 -7.4 29 58 A F H >X S+ 0 0 5 -4,-2.7 3,-1.9 2,-0.2 4,-1.1 0.935 112.3 67.7 -79.9 -51.4 3.0 4.5 -6.5 30 59 A S H >< S+ 0 0 58 -4,-2.7 3,-0.9 -5,-0.5 -3,-0.2 0.842 89.0 70.0 -35.0 -48.2 5.5 6.3 -8.7 31 60 A A T 3< S+ 0 0 82 -4,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.882 97.9 48.5 -38.0 -54.9 3.6 4.9 -11.7 32 61 A Y T <4 S- 0 0 38 -3,-1.9 -1,-0.3 -4,-0.4 -2,-0.2 0.870 132.6 -61.2 -57.0 -38.3 0.7 7.2 -10.9 33 62 A G S << S- 0 0 11 -4,-1.1 -1,-0.2 -3,-0.9 2,-0.2 -0.986 75.9 -33.0 174.8-173.7 3.1 10.1 -10.5 34 63 A P - 0 0 65 0, 0.0 24,-1.6 0, 0.0 2,-0.5 -0.458 53.2-134.9 -69.8 133.9 6.1 11.7 -8.7 35 64 A L E -C 57 0A 46 22,-0.2 22,-0.2 -2,-0.2 3,-0.2 -0.807 11.0-163.3 -94.9 123.7 6.4 10.9 -5.0 36 65 A S E S- 0 0 40 20,-2.6 2,-0.3 -2,-0.5 21,-0.2 0.897 75.1 -15.9 -69.6 -41.5 7.2 13.8 -2.7 37 66 A E E -C 56 0A 133 19,-1.4 19,-2.2 2,-0.0 2,-0.4 -0.946 59.5-146.8-165.5 142.8 8.3 11.5 0.2 38 67 A L E -C 55 0A 28 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.922 5.5-164.1-117.9 141.4 8.0 7.8 1.2 39 68 A H E +C 54 0A 111 15,-1.5 15,-1.7 -2,-0.4 -2,-0.0 -0.910 14.1 167.8-128.2 104.8 7.7 6.4 4.7 40 69 A Y - 0 0 19 -2,-0.5 13,-0.1 13,-0.2 2,-0.1 -0.835 19.7-156.9-120.5 93.6 8.3 2.7 5.2 41 70 A P - 0 0 20 0, 0.0 9,-0.5 0, 0.0 2,-0.4 -0.423 10.8-172.3 -69.8 139.6 8.7 1.8 8.9 42 71 A I - 0 0 70 7,-0.2 5,-0.1 -2,-0.1 -2,-0.0 -0.988 29.2-108.8-139.6 127.8 10.6 -1.4 9.7 43 72 A D > - 0 0 59 5,-3.0 4,-1.2 -2,-0.4 5,-0.1 -0.238 18.7-141.6 -53.2 133.4 11.0 -3.2 13.1 44 73 A S T 4 S+ 0 0 114 2,-0.2 -1,-0.2 3,-0.1 0, 0.0 0.485 100.2 42.7 -76.6 -2.0 14.6 -2.8 14.4 45 74 A L T 4 S+ 0 0 151 3,-0.2 -1,-0.1 0, 0.0 -2,-0.0 0.817 125.3 25.5-105.7 -61.9 14.3 -6.4 15.6 46 75 A T T 4 S- 0 0 67 2,-0.2 -2,-0.2 1,-0.0 -3,-0.0 0.586 94.9-135.2 -80.7 -10.8 12.6 -8.5 12.9 47 76 A K < + 0 0 156 -4,-1.2 -3,-0.1 1,-0.2 -1,-0.0 0.805 67.7 114.2 59.9 29.8 13.8 -6.0 10.3 48 77 A K - 0 0 96 -5,-0.1 -5,-3.0 1,-0.0 -1,-0.2 -0.949 68.3-107.3-132.3 152.1 10.4 -6.1 8.7 49 78 A P - 0 0 8 0, 0.0 -7,-0.2 0, 0.0 4,-0.1 -0.139 22.1-123.9 -69.8 169.0 7.5 -3.6 8.3 50 79 A K - 0 0 100 -9,-0.5 -35,-0.1 2,-0.3 3,-0.1 0.367 59.0 -94.4 -95.5 3.0 4.2 -3.6 10.2 51 80 A G S S+ 0 0 11 1,-0.3 -36,-2.0 -10,-0.3 -35,-1.3 0.772 95.9 92.0 89.5 29.2 2.2 -3.8 7.0 52 81 A F E +A 14 0A 65 -38,-0.3 -2,-0.3 -11,-0.2 -1,-0.3 -0.994 42.4 168.7-153.0 151.5 1.6 -0.0 6.7 53 82 A A E -A 13 0A 0 -40,-1.8 -40,-1.7 -2,-0.3 2,-0.5 -0.975 27.9-123.3-157.4 166.1 3.2 3.0 5.1 54 83 A F E -AC 12 39A 42 -15,-1.7 -15,-1.5 -2,-0.3 2,-0.5 -0.967 20.2-164.1-123.3 119.1 2.6 6.7 4.2 55 84 A V E -AC 11 38A 0 -44,-1.4 -44,-1.6 -2,-0.5 2,-0.6 -0.879 2.0-161.7-105.3 128.8 2.9 7.9 0.6 56 85 A T E -AC 10 37A 44 -19,-2.2 -20,-2.6 -2,-0.5 -19,-1.4 -0.912 7.8-158.5-113.4 108.8 3.2 11.7 -0.1 57 86 A F E -AC 9 35A 3 -48,-2.7 -48,-0.9 -2,-0.6 -22,-0.2 -0.616 16.7-138.6 -86.0 143.2 2.3 12.8 -3.6 58 87 A M S S+ 0 0 111 -24,-1.6 -49,-0.2 -2,-0.3 -1,-0.1 0.929 90.3 36.1 -64.3 -47.0 3.6 16.1 -5.0 59 88 A F S > S- 0 0 101 -25,-0.4 4,-1.6 -50,-0.1 3,-0.2 -0.853 71.4-140.8-112.1 146.1 0.3 16.9 -6.7 60 89 A P H > S+ 0 0 46 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.847 97.7 68.6 -69.8 -35.7 -3.2 16.2 -5.4 61 90 A E H > S+ 0 0 122 1,-0.2 4,-1.6 2,-0.2 3,-0.1 0.909 106.8 39.2 -49.8 -48.1 -4.5 15.3 -8.9 62 91 A H H > S+ 0 0 47 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.933 108.1 61.5 -69.1 -47.6 -2.4 12.2 -8.9 63 92 A A H X S+ 0 0 7 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.838 107.1 48.1 -47.5 -36.9 -3.0 11.4 -5.2 64 93 A V H X S+ 0 0 81 -4,-2.1 4,-1.4 2,-0.2 -1,-0.2 0.938 107.3 52.9 -71.0 -48.8 -6.7 11.1 -6.2 65 94 A K H X S+ 0 0 107 -4,-1.6 4,-1.4 1,-0.2 5,-0.2 0.872 114.8 43.7 -54.6 -39.3 -6.2 8.9 -9.2 66 95 A A H X>S+ 0 0 1 -4,-2.5 4,-2.5 2,-0.2 5,-0.9 0.895 109.2 55.1 -73.8 -41.8 -4.2 6.5 -7.0 67 96 A Y H <5S+ 0 0 84 -4,-2.0 -1,-0.2 -5,-0.3 -2,-0.2 0.698 111.8 47.3 -64.7 -18.3 -6.6 6.6 -4.1 68 97 A A H <5S+ 0 0 74 -4,-1.4 -1,-0.2 -5,-0.1 -2,-0.2 0.781 125.7 26.5 -91.7 -32.8 -9.3 5.6 -6.6 69 98 A E H <5S+ 0 0 111 -4,-1.4 -2,-0.2 -5,-0.2 -3,-0.2 0.894 123.9 45.8 -94.1 -56.6 -7.3 2.7 -8.2 70 99 A V T ><5S+ 0 0 0 -4,-2.5 3,-1.9 -5,-0.2 2,-1.6 0.934 91.7 86.6 -52.7 -52.0 -5.0 1.6 -5.5 71 100 A D T 3 S- 0 0 165 -2,-1.6 2,-1.0 3,-0.0 3,-0.7 -0.991 86.6-114.6-153.0 155.3 -1.2 20.2 12.3 90 119 A E T 3 S+ 0 0 173 -2,-0.3 -2,-0.1 1,-0.2 3,-0.1 -0.237 79.9 113.0 -85.9 47.1 -0.3 23.8 11.8 91 120 A A T 3 + 0 0 76 -2,-1.0 2,-1.0 1,-0.2 -1,-0.2 0.816 60.1 70.2 -85.8 -34.8 3.0 22.8 10.0 92 121 A S < - 0 0 71 -3,-0.7 -1,-0.2 1,-0.2 3,-0.1 -0.747 61.9-171.5 -89.9 101.4 1.9 24.2 6.7 93 122 A Q - 0 0 181 -2,-1.0 2,-0.3 1,-0.2 -1,-0.2 0.929 68.4 -24.3 -55.6 -49.2 1.9 28.0 6.9 94 123 A S - 0 0 92 -3,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.982 52.0-128.4-160.1 164.1 0.3 28.4 3.5 95 124 A G - 0 0 72 -2,-0.3 -89,-0.0 -3,-0.1 -87,-0.0 -0.725 31.5-175.3-125.2 83.8 -0.2 26.7 0.2 96 125 A P - 0 0 119 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.124 14.9-138.9 -69.8 170.2 0.8 28.9 -2.7 97 126 A S - 0 0 116 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.958 15.6-170.1-139.9 118.5 0.4 28.1 -6.4 98 127 A S 0 0 130 -2,-0.4 0, 0.0 1,-0.2 0, 0.0 -0.708 360.0 360.0-105.8 157.8 2.9 28.9 -9.2 99 128 A G 0 0 128 -2,-0.3 -1,-0.2 0, 0.0 0, 0.0 0.961 360.0 360.0 78.7 360.0 2.5 28.6 -12.9