==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 28-MAY-04 1WHX . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1200009A02; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8426.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 17.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 20.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 212 A G 0 0 124 0, 0.0 4,-0.1 0, 0.0 87,-0.0 0.000 360.0 360.0 360.0 41.0 -7.3 25.9 2.8 2 213 A S > + 0 0 108 2,-0.1 3,-0.9 81,-0.1 4,-0.3 0.782 360.0 51.1-105.6 -43.9 -7.2 25.1 -0.9 3 214 A S G >> S+ 0 0 65 1,-0.2 3,-2.2 2,-0.2 4,-1.4 0.875 94.1 75.1 -63.2 -38.3 -8.2 21.5 -1.0 4 215 A G G 34 S+ 0 0 33 1,-0.3 -1,-0.2 2,-0.2 -2,-0.1 0.836 79.0 74.5 -42.1 -40.6 -11.2 22.2 1.1 5 216 A S G <4 S+ 0 0 120 -3,-0.9 -1,-0.3 1,-0.2 -2,-0.2 0.869 106.5 33.8 -41.1 -46.8 -12.9 23.7 -1.9 6 217 A S T <4 S- 0 0 75 -3,-2.2 -1,-0.2 -4,-0.3 -2,-0.2 0.965 108.8-123.5 -76.0 -57.0 -13.3 20.2 -3.3 7 218 A G S < S+ 0 0 38 -4,-1.4 76,-0.6 1,-0.1 2,-0.3 -0.206 74.3 23.5 142.4 -48.2 -13.9 18.3 -0.0 8 219 A R E S-A 82 0A 127 74,-0.2 -1,-0.1 -5,-0.2 -2,-0.1 -0.937 89.6 -77.5-144.0 165.1 -11.4 15.5 0.2 9 220 A S E - 0 0 11 72,-3.1 72,-0.2 -2,-0.3 74,-0.1 -0.352 30.3-172.7 -65.2 141.6 -7.9 14.6 -1.1 10 221 A K E S+ 0 0 59 70,-0.1 50,-0.2 43,-0.1 -1,-0.1 0.498 85.3 43.6-111.0 -11.1 -7.8 13.3 -4.7 11 222 A T E S+ 0 0 51 1,-0.1 42,-2.5 48,-0.1 2,-0.5 0.710 105.4 65.4-103.8 -30.0 -4.1 12.3 -4.7 12 223 A V E + B 0 52A 4 40,-0.3 69,-2.1 69,-0.2 2,-0.4 -0.856 63.5 177.2-101.0 124.4 -3.9 10.6 -1.3 13 224 A I E -AB 80 51A 3 38,-2.6 38,-2.4 -2,-0.5 2,-0.2 -0.958 16.0-144.7-127.8 145.3 -6.0 7.5 -0.7 14 225 A L E -AB 79 50A 33 65,-2.6 65,-2.2 -2,-0.4 2,-0.4 -0.683 7.3-143.1-105.5 160.3 -6.2 5.1 2.3 15 226 A A E -AB 78 49A 1 34,-2.1 34,-1.8 -2,-0.2 2,-0.2 -0.979 17.0-174.9-128.7 121.9 -6.7 1.3 2.4 16 227 A K E +A 77 0A 110 61,-2.9 61,-2.4 -2,-0.4 31,-0.0 -0.719 58.7 44.2-111.4 162.9 -8.8 -0.5 5.0 17 228 A N S S+ 0 0 66 -2,-0.2 -1,-0.2 1,-0.2 57,-0.1 0.958 72.5 161.6 70.7 52.9 -9.3 -4.2 5.7 18 229 A L - 0 0 8 -3,-0.2 -1,-0.2 58,-0.1 29,-0.1 -0.889 38.8-117.5-110.4 136.4 -5.7 -5.2 5.4 19 230 A P > - 0 0 30 0, 0.0 3,-2.4 0, 0.0 -1,-0.0 -0.391 25.2-115.8 -69.8 143.6 -4.2 -8.5 6.8 20 231 A A T 3 S+ 0 0 103 1,-0.3 26,-0.0 -2,-0.1 -2,-0.0 0.691 116.1 66.1 -51.7 -17.3 -1.6 -8.3 9.5 21 232 A G T 3 S+ 0 0 54 2,-0.1 -1,-0.3 0, 0.0 -3,-0.0 0.813 78.4 102.5 -75.8 -30.9 0.6 -9.9 6.9 22 233 A T < - 0 0 13 -3,-2.4 2,-0.3 1,-0.1 3,-0.1 -0.035 57.4-158.1 -50.1 156.2 0.5 -6.9 4.7 23 234 A L > - 0 0 100 1,-0.1 4,-2.3 26,-0.0 5,-0.2 -0.984 28.7-113.8-141.8 151.4 3.6 -4.6 4.6 24 235 A A H > S+ 0 0 43 -2,-0.3 4,-2.7 18,-0.3 5,-0.1 0.933 118.0 46.6 -45.6 -58.9 4.4 -1.0 3.7 25 236 A A H > S+ 0 0 55 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.937 108.1 56.2 -50.4 -54.4 6.6 -2.1 0.8 26 237 A E H > S+ 0 0 78 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.906 111.7 43.5 -44.7 -51.8 4.0 -4.6 -0.5 27 238 A I H X S+ 0 0 2 -4,-2.3 4,-2.3 2,-0.2 5,-0.3 0.958 110.4 54.9 -60.8 -53.5 1.4 -1.8 -0.7 28 239 A Q H X S+ 0 0 105 -4,-2.7 4,-3.0 -5,-0.2 -2,-0.2 0.928 116.0 37.7 -44.8 -58.6 3.8 0.8 -2.2 29 240 A E H X S+ 0 0 77 -4,-2.6 4,-1.8 2,-0.2 -2,-0.2 0.981 109.1 60.5 -59.0 -61.1 4.7 -1.6 -5.1 30 241 A T H < S+ 0 0 42 -4,-2.6 -1,-0.2 -5,-0.3 4,-0.2 0.822 117.1 35.0 -34.5 -44.2 1.2 -3.1 -5.5 31 242 A F H >X S+ 0 0 5 -4,-2.3 3,-2.5 1,-0.2 4,-1.2 0.888 106.6 66.1 -80.6 -42.9 0.1 0.5 -6.3 32 243 A S H 3< S+ 0 0 45 -4,-3.0 -2,-0.2 -5,-0.3 -1,-0.2 0.709 85.6 78.4 -52.1 -19.1 3.3 1.6 -8.0 33 244 A R T 3< S+ 0 0 178 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.865 98.9 39.1 -59.1 -37.3 2.2 -1.0 -10.6 34 245 A F T <4 S- 0 0 82 -3,-2.5 2,-0.3 1,-0.3 -2,-0.2 0.902 134.3 -30.2 -79.7 -44.7 -0.3 1.5 -12.0 35 246 A G S < S- 0 0 15 -4,-1.2 -1,-0.3 24,-0.0 19,-0.0 -0.987 78.8 -61.7-166.8 167.5 1.8 4.6 -11.7 36 247 A S - 0 0 97 -2,-0.3 18,-0.8 -3,-0.1 19,-0.4 -0.198 50.7-145.4 -56.9 147.0 4.6 6.3 -9.7 37 248 A L E -C 53 0A 30 16,-0.2 16,-0.2 1,-0.2 3,-0.1 -0.785 14.1-161.9-115.7 160.1 3.9 7.0 -6.1 38 249 A G E + 0 0 20 14,-2.4 2,-0.3 1,-0.4 15,-0.2 0.846 68.9 5.5-102.6 -69.6 4.9 9.9 -3.8 39 250 A R E - 0 0 163 13,-0.5 13,-2.4 2,-0.0 -1,-0.4 -0.826 54.9-169.4-119.6 159.0 4.5 8.9 -0.1 40 251 A V E +C 51 0A 32 -2,-0.3 2,-0.5 11,-0.2 11,-0.2 -0.866 8.5 171.1-152.8 113.5 3.6 5.7 1.7 41 252 A L E +C 50 0A 104 9,-2.7 9,-3.3 -2,-0.3 -2,-0.0 -0.963 3.2 166.5-128.9 116.1 2.8 5.3 5.4 42 253 A L - 0 0 34 -2,-0.5 -18,-0.3 7,-0.2 7,-0.2 -0.854 20.4-154.3-133.0 98.4 1.5 2.0 6.8 43 254 A P - 0 0 64 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.346 12.9-140.6 -69.8 149.2 1.5 1.7 10.6 44 255 A E S S+ 0 0 198 1,-0.2 3,-0.1 -2,-0.1 4,-0.0 0.889 100.2 58.0 -77.0 -41.6 1.7 -1.8 12.2 45 256 A G S S+ 0 0 81 1,-0.2 2,-0.5 2,-0.1 -1,-0.2 0.812 112.4 44.3 -58.7 -30.5 -0.8 -1.0 15.0 46 257 A G S S- 0 0 25 2,-0.2 -1,-0.2 1,-0.2 0, 0.0 -0.918 71.9-151.6-123.5 108.0 -3.4 -0.1 12.4 47 258 A I S S+ 0 0 71 -2,-0.5 -1,-0.2 -3,-0.1 -2,-0.1 0.843 70.3 106.4 -38.9 -43.3 -3.9 -2.3 9.4 48 259 A T - 0 0 39 -3,-0.1 2,-0.4 1,-0.1 -32,-0.2 -0.005 59.6-156.3 -40.4 141.9 -5.0 0.8 7.5 49 260 A A E -B 15 0A 0 -34,-1.8 -34,-2.1 -7,-0.2 2,-0.5 -0.993 7.0-146.8-132.1 134.7 -2.4 2.0 5.1 50 261 A I E +BC 14 41A 33 -9,-3.3 -9,-2.7 -2,-0.4 2,-0.4 -0.866 17.6 179.2-103.4 128.6 -1.9 5.5 3.6 51 262 A V E -BC 13 40A 0 -38,-2.4 -38,-2.6 -2,-0.5 2,-0.4 -0.978 11.8-156.5-132.7 121.5 -0.6 6.0 0.1 52 263 A E E -B 12 0A 31 -13,-2.4 -14,-2.4 -2,-0.4 -13,-0.5 -0.791 10.1-146.0 -98.7 137.0 -0.1 9.3 -1.7 53 264 A F E - C 0 37A 3 -42,-2.5 -16,-0.2 -2,-0.4 -43,-0.1 -0.824 11.4-145.2-103.9 140.0 -0.1 9.6 -5.5 54 265 A L S S+ 0 0 106 -18,-0.8 -17,-0.1 -2,-0.4 -1,-0.1 0.744 91.1 43.5 -71.4 -23.4 2.1 12.0 -7.4 55 266 A E > - 0 0 85 -19,-0.4 4,-1.9 -44,-0.1 -1,-0.1 -0.980 67.2-150.8-128.5 136.9 -0.7 12.5 -9.9 56 267 A P H > S+ 0 0 53 0, 0.0 4,-2.0 0, 0.0 5,-0.2 0.865 98.9 54.1 -69.8 -38.0 -4.5 12.9 -9.3 57 268 A L H > S+ 0 0 121 2,-0.2 4,-1.9 1,-0.2 -46,-0.0 0.941 111.6 43.6 -62.5 -49.2 -5.5 11.3 -12.6 58 269 A E H > S+ 0 0 80 2,-0.2 4,-2.2 1,-0.2 5,-0.3 0.919 109.6 57.6 -62.9 -45.1 -3.5 8.1 -11.9 59 270 A A H X S+ 0 0 0 -4,-1.9 4,-2.4 1,-0.2 -1,-0.2 0.929 108.7 45.2 -50.8 -52.2 -4.7 7.9 -8.3 60 271 A R H X S+ 0 0 131 -4,-2.0 4,-2.1 1,-0.2 5,-0.3 0.909 107.7 59.1 -59.8 -43.9 -8.3 7.8 -9.4 61 272 A K H X S+ 0 0 107 -4,-1.9 4,-1.9 1,-0.2 -1,-0.2 0.921 110.9 40.8 -51.2 -49.7 -7.5 5.3 -12.1 62 273 A A H X>S+ 0 0 1 -4,-2.2 4,-2.8 2,-0.2 5,-0.7 0.891 107.7 63.9 -67.2 -40.6 -6.2 2.8 -9.4 63 274 A F H X5S+ 0 0 46 -4,-2.4 4,-2.4 -5,-0.3 -2,-0.2 0.945 111.2 34.9 -47.3 -60.7 -9.0 3.7 -7.0 64 275 A R H <5S+ 0 0 175 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.907 121.0 51.1 -62.6 -43.3 -11.8 2.4 -9.3 65 276 A H H <5S+ 0 0 80 -4,-1.9 -2,-0.2 -5,-0.3 -3,-0.2 0.993 117.8 33.9 -57.3 -71.0 -9.5 -0.4 -10.5 66 277 A L H ><5S+ 0 0 21 -4,-2.8 3,-0.8 -5,-0.1 10,-0.2 0.881 99.6 103.2 -53.4 -41.0 -8.4 -1.8 -7.2 67 278 A A T 3< -A 8 0A 46 0, 0.0 3,-1.2 0, 0.0 4,-0.4 -0.293 21.9-116.3 -69.8 154.8 -9.3 14.0 4.3 83 294 A I T 3> S+ 0 0 77 -76,-0.6 4,-0.7 1,-0.3 3,-0.3 0.755 119.2 50.8 -62.6 -23.9 -7.9 17.5 3.5 84 295 A G T 34 S+ 0 0 51 1,-0.2 -1,-0.3 2,-0.2 4,-0.1 0.579 78.6 100.2 -89.6 -11.0 -6.6 17.6 7.0 85 296 A V T <4 S+ 0 0 56 -3,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.868 102.7 20.3 -39.2 -48.9 -4.9 14.3 6.8 86 297 A F T 4 S- 0 0 126 -4,-0.4 -1,-0.2 -3,-0.3 2,-0.2 0.824 105.4-153.4 -91.6 -38.4 -1.6 16.1 6.2 87 298 A G < - 0 0 49 -4,-0.7 2,-0.3 2,-0.0 -1,-0.2 -0.566 18.6 -72.0 98.1-163.7 -2.6 19.5 7.7 88 299 A A - 0 0 99 -2,-0.2 -4,-0.0 -4,-0.1 0, 0.0 -0.980 32.1-142.2-138.0 149.5 -1.4 22.9 6.9 89 300 A A - 0 0 93 -2,-0.3 -2,-0.0 1,-0.1 2,-0.0 -0.753 29.2 -97.6-110.5 157.6 1.8 24.9 7.6 90 301 A P - 0 0 102 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.284 35.8-140.9 -69.8 155.8 2.4 28.6 8.6 91 302 A Q - 0 0 118 1,-0.0 4,-0.5 -2,-0.0 3,-0.4 -0.418 31.1 -90.7-107.9-175.1 3.4 31.2 6.0 92 303 A K S >> S+ 0 0 178 1,-0.2 3,-2.2 2,-0.2 4,-0.6 0.938 119.1 66.2 -62.7 -48.6 5.7 34.1 5.9 93 304 A K H >> S+ 0 0 134 1,-0.3 3,-1.4 2,-0.2 4,-0.9 0.845 86.3 73.6 -40.7 -42.1 3.1 36.6 7.0 94 305 A D H >> S+ 0 0 75 -3,-0.4 3,-1.4 1,-0.3 4,-0.5 0.875 88.0 60.2 -40.2 -49.4 3.1 34.7 10.3 95 306 A S H X4 S+ 0 0 77 -3,-2.2 3,-2.0 -4,-0.5 -1,-0.3 0.892 92.8 65.8 -48.0 -45.9 6.4 36.3 11.2 96 307 A Q H << S+ 0 0 164 -3,-1.4 -1,-0.3 -4,-0.6 -2,-0.2 0.871 84.4 74.1 -44.6 -44.1 4.7 39.7 11.0 97 308 A H H << S+ 0 0 175 -3,-1.4 -1,-0.3 -4,-0.9 -2,-0.2 0.853 77.2 97.6 -37.6 -47.0 2.7 38.7 14.0 98 309 A E S << S- 0 0 153 -3,-2.0 -3,-0.0 -4,-0.5 0, 0.0 0.004 74.1-130.6 -44.1 151.4 5.8 39.2 16.1 99 310 A Q - 0 0 124 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.802 15.6-111.5-111.7 153.1 6.1 42.6 17.8 100 311 A P - 0 0 95 0, 0.0 -1,-0.1 0, 0.0 4,-0.0 -0.005 19.4-122.8 -69.7 179.8 9.0 45.1 17.8 101 312 A A S > S+ 0 0 86 2,-0.1 3,-1.9 1,-0.1 4,-0.3 0.714 101.6 71.3 -97.5 -27.4 11.1 46.0 20.8 102 313 A E G >> S+ 0 0 137 1,-0.3 3,-2.8 2,-0.2 4,-0.5 0.892 80.9 74.1 -55.8 -42.3 10.4 49.8 20.8 103 314 A K G 34 S+ 0 0 101 1,-0.3 3,-0.4 2,-0.2 -1,-0.3 0.738 79.8 78.4 -44.2 -23.4 6.9 49.1 22.0 104 315 A A G <4 S+ 0 0 79 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.892 83.2 60.9 -54.7 -42.7 8.7 48.4 25.3 105 316 A E T <4 S+ 0 0 158 -3,-2.8 -1,-0.2 -4,-0.3 -2,-0.2 0.911 78.1 105.8 -51.4 -47.5 9.0 52.1 26.0 106 317 A S < + 0 0 99 -4,-0.5 -3,-0.0 -3,-0.4 0, 0.0 -0.061 51.6 148.5 -38.6 120.6 5.2 52.5 25.9 107 318 A G - 0 0 54 1,-0.1 -2,-0.0 0, 0.0 -1,-0.0 -0.933 45.1 -80.5-152.1 174.4 4.2 53.0 29.6 108 319 A P - 0 0 126 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.011 31.8-125.1 -69.8-178.9 1.7 54.6 32.0 109 320 A S S S- 0 0 126 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.839 79.4 -14.3 -97.0 -45.4 1.7 58.2 33.1 110 321 A S 0 0 100 1,-0.0 -1,-0.3 0, 0.0 0, 0.0 -0.902 360.0 360.0-149.7 176.1 1.8 57.8 36.9 111 322 A G 0 0 126 -2,-0.3 -1,-0.0 -3,-0.1 0, 0.0 0.594 360.0 360.0 -88.9 360.0 1.2 55.2 39.7