==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WI3 . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.IZUMI,M.YOSHIDA,F.HAYASHI,R.HATTA,S.YOKOYAMA,RIKEN . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6064.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 52.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 43.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.1 13.0 -9.0 10.5 2 2 A S + 0 0 126 2,-0.0 2,-0.3 30,-0.0 30,-0.0 -0.738 360.0 124.3 179.4 129.3 11.4 -6.2 12.4 3 3 A S - 0 0 115 -2,-0.2 2,-0.3 2,-0.0 0, 0.0 -0.928 18.8-180.0 179.0 160.7 10.2 -2.7 11.6 4 4 A G - 0 0 54 -2,-0.3 2,-0.2 28,-0.0 28,-0.0 -0.957 6.0-168.2-162.3 174.5 7.3 -0.3 11.7 5 5 A S - 0 0 74 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.832 23.2-120.3-175.4 135.0 6.1 3.2 10.9 6 6 A S - 0 0 124 -2,-0.2 48,-0.0 1,-0.0 51,-0.0 -0.386 24.8-179.4 -78.5 158.4 3.0 5.3 11.6 7 7 A G - 0 0 25 -2,-0.1 -2,-0.0 47,-0.1 -1,-0.0 -0.599 6.1-167.1-164.2 94.4 0.8 6.7 8.9 8 8 A P + 0 0 99 0, 0.0 49,-0.0 0, 0.0 46,-0.0 -0.107 53.4 40.6 -75.0 177.5 -2.2 8.9 9.6 9 9 A R - 0 0 232 1,-0.1 2,-0.3 45,-0.0 0, 0.0 0.396 65.1-146.2 60.7 154.5 -4.9 9.9 7.2 10 10 A S + 0 0 99 48,-0.0 2,-0.2 2,-0.0 -1,-0.1 -0.931 31.5 139.5-158.9 131.1 -6.3 7.5 4.6 11 11 A R + 0 0 230 -2,-0.3 2,-0.3 40,-0.1 44,-0.1 -0.625 15.2 149.5-176.5 111.4 -7.6 7.9 1.0 12 12 A T - 0 0 72 -2,-0.2 2,-0.2 42,-0.1 -2,-0.0 -0.942 26.9-158.0-144.0 163.3 -7.1 5.7 -2.0 13 13 A K + 0 0 202 -2,-0.3 2,-0.6 3,-0.0 3,-0.1 -0.693 18.5 171.5-148.2 87.9 -8.8 4.7 -5.2 14 14 A I - 0 0 30 -2,-0.2 -2,-0.0 1,-0.2 0, 0.0 -0.895 33.5-139.3-104.2 121.3 -7.7 1.5 -6.7 15 15 A S - 0 0 126 -2,-0.6 -1,-0.2 1,-0.1 0, 0.0 0.865 53.1-104.1 -40.4 -47.3 -9.8 0.2 -9.7 16 16 A L S > S+ 0 0 115 -3,-0.1 4,-3.9 0, 0.0 5,-0.2 -0.404 103.8 74.7 154.4 -66.3 -9.3 -3.2 -8.1 17 17 A E H > S+ 0 0 134 2,-0.2 4,-3.0 1,-0.2 5,-0.1 0.895 99.8 44.6 -36.1 -83.3 -6.8 -5.2 -10.1 18 18 A A H > S+ 0 0 23 1,-0.3 4,-2.1 2,-0.2 5,-0.4 0.833 117.8 47.7 -28.6 -60.0 -3.7 -3.5 -8.8 19 19 A L H > S+ 0 0 52 1,-0.2 4,-3.1 2,-0.2 -1,-0.3 0.954 113.0 47.0 -48.6 -61.8 -5.1 -3.7 -5.4 20 20 A G H X S+ 0 0 34 -4,-3.9 4,-2.4 2,-0.2 -1,-0.2 0.903 110.4 55.3 -46.6 -51.1 -6.1 -7.4 -5.8 21 21 A I H >X S+ 0 0 68 -4,-3.0 3,-1.9 1,-0.3 4,-1.4 0.957 112.9 37.5 -45.8 -76.0 -2.6 -8.1 -7.1 22 22 A L H 3X S+ 0 0 0 -4,-2.1 4,-1.8 1,-0.3 -1,-0.3 0.834 112.2 64.0 -45.9 -36.5 -0.6 -6.7 -4.2 23 23 A Q H 3X S+ 0 0 60 -4,-3.1 4,-2.0 -5,-0.4 -1,-0.3 0.889 99.2 51.7 -55.5 -42.7 -3.4 -8.2 -2.1 24 24 A S H S+ 0 0 46 -4,-1.4 4,-3.9 1,-0.2 5,-0.5 0.794 107.0 55.8 -65.7 -29.4 1.2 -10.9 -2.3 26 26 A I H X5S+ 0 0 5 -4,-1.8 4,-1.7 -5,-0.2 -1,-0.2 0.914 108.7 45.0 -68.5 -44.6 -0.1 -9.8 1.1 27 27 A H H <5S+ 0 0 173 -4,-2.0 -1,-0.2 2,-0.2 -2,-0.2 0.589 119.1 47.1 -74.1 -10.6 -1.8 -13.1 1.7 28 28 A D H <5S+ 0 0 129 -4,-0.6 -2,-0.2 -5,-0.2 -3,-0.2 0.887 127.4 21.5 -93.5 -55.0 1.4 -14.7 0.4 29 29 A V H <5S- 0 0 72 -4,-3.9 2,-0.4 1,-0.2 -3,-0.2 0.921 102.8-137.4 -78.9 -48.8 4.0 -12.8 2.3 30 30 A G << - 0 0 25 -4,-1.7 -1,-0.2 -5,-0.5 -2,-0.1 -0.953 51.6 -35.9 133.0-113.5 1.7 -11.7 5.1 31 31 A L S S+ 0 0 32 -2,-0.4 -5,-0.1 1,-0.1 -1,-0.1 -0.230 109.2 87.2-144.8 46.0 1.8 -8.2 6.5 32 32 A Y - 0 0 161 -6,-0.1 2,-0.2 -30,-0.0 -1,-0.1 -0.487 53.0-179.1-148.2 70.3 5.5 -7.3 6.4 33 33 A P - 0 0 35 0, 0.0 2,-0.2 0, 0.0 -7,-0.0 -0.501 18.5-138.9 -75.0 139.8 6.5 -5.8 3.1 34 34 A D > - 0 0 101 -2,-0.2 4,-3.0 1,-0.1 3,-0.5 -0.636 31.1-100.3 -97.6 156.8 10.1 -4.8 2.6 35 35 A Q H > S+ 0 0 158 1,-0.3 4,-1.3 -2,-0.2 -1,-0.1 0.753 129.5 50.8 -43.5 -26.7 11.4 -1.7 0.9 36 36 A E H > S+ 0 0 146 2,-0.2 4,-2.0 3,-0.1 -1,-0.3 0.911 108.4 47.5 -78.6 -46.9 11.9 -4.1 -2.0 37 37 A A H > S+ 0 0 7 -3,-0.5 4,-2.2 1,-0.2 -2,-0.2 0.906 112.7 50.5 -60.2 -43.6 8.4 -5.5 -2.0 38 38 A I H X S+ 0 0 16 -4,-3.0 4,-3.2 1,-0.2 5,-0.2 0.903 107.0 54.3 -60.7 -43.1 6.9 -2.1 -1.8 39 39 A H H X S+ 0 0 117 -4,-1.3 4,-0.7 -5,-0.4 -1,-0.2 0.886 109.4 48.0 -57.7 -41.1 9.1 -1.0 -4.7 40 40 A T H X S+ 0 0 66 -4,-2.0 4,-3.4 2,-0.2 5,-0.4 0.859 112.7 48.2 -67.6 -37.0 7.6 -3.9 -6.7 41 41 A L H X S+ 0 0 3 -4,-2.2 4,-1.4 1,-0.2 6,-0.8 0.867 111.0 50.2 -70.4 -37.8 4.1 -2.9 -5.6 42 42 A S H < S+ 0 0 29 -4,-3.2 -1,-0.2 4,-0.2 -2,-0.2 0.643 122.3 35.9 -73.7 -15.2 4.8 0.7 -6.6 43 43 A A H < S+ 0 0 60 -4,-0.7 -2,-0.2 -5,-0.2 -3,-0.2 0.863 115.0 47.8 -98.8 -67.6 6.0 -0.7 -9.9 44 44 A Q H < S+ 0 0 132 -4,-3.4 -3,-0.2 1,-0.3 -2,-0.1 0.855 132.3 26.0 -41.6 -44.4 3.8 -3.7 -10.8 45 45 A L S < S- 0 0 24 -4,-1.4 -1,-0.3 -5,-0.4 -3,-0.2 0.740 104.3-132.9 -91.1 -29.0 0.9 -1.4 -9.9 46 46 A D + 0 0 139 -5,-0.4 -3,-0.2 1,-0.3 -4,-0.2 0.706 58.9 139.8 81.1 22.3 2.7 1.8 -10.7 47 47 A L - 0 0 48 -6,-0.8 -1,-0.3 1,-0.1 -2,-0.1 -0.547 56.8 -95.3 -95.7 163.3 1.5 3.2 -7.4 48 48 A P > - 0 0 40 0, 0.0 4,-2.4 0, 0.0 5,-0.2 -0.317 26.7-120.5 -75.0 160.1 3.5 5.4 -5.0 49 49 A K H > S+ 0 0 61 2,-0.2 4,-4.1 1,-0.2 5,-0.2 0.958 114.1 52.1 -63.6 -53.1 5.3 4.0 -1.9 50 50 A H H > S+ 0 0 114 1,-0.2 4,-4.6 2,-0.2 5,-0.2 0.902 110.2 51.1 -48.9 -47.3 3.3 6.1 0.5 51 51 A T H > S+ 0 0 31 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.968 114.2 40.7 -54.9 -60.7 0.1 4.8 -1.2 52 52 A I H X S+ 0 0 2 -4,-2.4 4,-2.6 1,-0.2 -2,-0.2 0.923 119.6 47.6 -54.0 -48.4 1.1 1.2 -0.9 53 53 A I H X S+ 0 0 49 -4,-4.1 4,-2.8 2,-0.2 -2,-0.2 0.975 112.9 47.4 -56.5 -60.7 2.4 1.8 2.6 54 54 A K H X S+ 0 0 87 -4,-4.6 4,-1.5 1,-0.2 3,-0.3 0.945 111.9 49.1 -43.9 -68.9 -0.6 3.7 3.7 55 55 A F H >X S+ 0 0 32 -4,-2.8 4,-1.2 1,-0.3 3,-1.0 0.873 111.3 51.0 -37.3 -55.5 -3.1 1.1 2.4 56 56 A F H >X S+ 0 0 11 -4,-2.6 4,-2.1 1,-0.3 3,-0.9 0.928 100.0 62.3 -50.0 -53.7 -1.1 -1.6 4.1 57 57 A Q H 3X S+ 0 0 43 -4,-2.8 4,-3.4 -3,-0.3 -1,-0.3 0.836 100.5 56.0 -40.9 -41.3 -1.2 0.3 7.4 58 58 A N H