==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 28-MAY-04 1WIB . COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L12; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8138.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 46.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 16.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -6 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 161.0 1.3 -41.6 -35.7 2 -5 A S - 0 0 127 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.978 360.0-165.0-157.3 164.5 2.6 -38.9 -33.4 3 -4 A S - 0 0 114 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.978 25.6-109.9-157.6 142.7 4.2 -35.5 -33.3 4 -3 A G - 0 0 70 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.184 15.8-161.1 -69.1 165.3 6.0 -33.3 -30.8 5 -2 A S - 0 0 111 2,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.750 2.9-170.6-112.9 -50.5 4.5 -30.2 -29.2 6 -1 A S + 0 0 130 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.896 28.7 171.1 55.2 42.9 7.4 -28.1 -27.9 7 1 A G - 0 0 49 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.383 34.8 -93.1 -82.9 162.7 5.0 -25.8 -26.1 8 2 A P - 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.185 44.8 -97.5 -69.7 164.3 5.9 -23.1 -23.6 9 3 A P - 0 0 124 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.090 35.0-129.2 -69.8-172.7 6.0 -23.5 -19.8 10 4 A K - 0 0 184 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.958 26.2 -84.3-142.0 159.1 3.3 -22.7 -17.3 11 5 A F - 0 0 180 -2,-0.3 -1,-0.1 3,-0.0 3,-0.1 -0.024 43.9-168.3 -56.0 165.6 2.9 -20.8 -14.1 12 6 A D - 0 0 114 3,-0.1 -1,-0.0 1,-0.1 0, 0.0 -0.970 32.3-134.4-161.4 144.0 3.7 -22.5 -10.8 13 7 A P S S+ 0 0 93 0, 0.0 59,-0.2 0, 0.0 -1,-0.1 0.768 100.9 68.1 -69.8 -26.7 3.2 -21.9 -7.0 14 8 A N S S+ 0 0 142 57,-0.1 -3,-0.0 -3,-0.1 -2,-0.0 0.983 94.4 57.6 -56.8 -64.1 6.8 -22.9 -6.3 15 9 A E S S- 0 0 156 1,-0.0 2,-0.4 56,-0.0 -3,-0.1 -0.153 78.5-141.4 -65.1 163.8 8.5 -19.9 -8.1 16 10 A V - 0 0 77 55,-0.1 2,-0.3 2,-0.0 55,-0.1 -0.994 14.6-171.9-134.2 138.3 7.7 -16.3 -7.0 17 11 A K E -A 70 0A 124 53,-0.6 53,-1.0 -2,-0.4 2,-0.4 -0.965 12.2-143.4-130.3 146.4 7.3 -13.1 -9.0 18 12 A V E -A 69 0A 49 -2,-0.3 2,-0.4 51,-0.2 51,-0.2 -0.854 9.0-154.2-110.5 144.5 6.9 -9.5 -8.0 19 13 A V E -A 68 0A 62 49,-2.3 49,-2.9 -2,-0.4 2,-0.4 -0.962 4.8-156.3-121.1 132.9 4.7 -6.9 -9.7 20 14 A Y E +A 67 0A 135 -2,-0.4 2,-0.3 47,-0.2 47,-0.2 -0.850 12.2 179.2-109.0 142.8 5.3 -3.1 -9.7 21 15 A L E -A 66 0A 92 45,-1.2 45,-1.1 -2,-0.4 2,-0.6 -0.999 21.8-138.8-144.4 138.6 2.6 -0.4 -10.2 22 16 A R E +A 65 0A 176 -2,-0.3 2,-0.3 43,-0.1 43,-0.1 -0.866 45.4 128.9-101.5 116.8 2.7 3.4 -10.2 23 17 A C E -A 64 0A 61 41,-0.8 41,-0.9 -2,-0.6 2,-0.2 -0.965 58.6 -77.6-156.8 168.8 -0.2 5.1 -8.5 24 18 A T E > -A 63 0A 47 -2,-0.3 3,-0.5 39,-0.2 39,-0.2 -0.469 51.4-108.7 -74.7 143.5 -1.1 7.7 -5.9 25 19 A G T 3 S+ 0 0 2 37,-1.4 36,-0.9 1,-0.2 3,-0.1 -0.436 94.7 6.2 -73.3 144.6 -0.7 6.8 -2.2 26 20 A G T 3 S+ 0 0 11 26,-0.2 2,-1.0 1,-0.2 -1,-0.2 0.940 78.1 170.5 48.8 58.0 -3.9 6.3 -0.1 27 21 A E < + 0 0 113 -3,-0.5 -1,-0.2 1,-0.2 26,-0.1 -0.697 9.7 160.4-102.1 80.9 -6.2 6.6 -3.1 28 22 A V + 0 0 115 -2,-1.0 -1,-0.2 -3,-0.1 -2,-0.1 0.937 41.5 105.4 -64.5 -48.4 -9.6 5.6 -1.7 29 23 A G + 0 0 63 -3,-0.2 2,-0.3 2,-0.1 -2,-0.0 -0.042 49.9 126.7 -37.5 121.6 -11.6 7.3 -4.4 30 24 A A - 0 0 78 2,-0.0 -2,-0.0 3,-0.0 -1,-0.0 -0.961 57.8-136.0-174.4 160.5 -12.9 4.5 -6.7 31 25 A T S S- 0 0 131 -2,-0.3 -2,-0.1 0, 0.0 0, 0.0 -0.301 72.0 -78.8-122.7 47.6 -15.9 3.0 -8.4 32 26 A S S S+ 0 0 93 1,-0.1 3,-0.1 3,-0.1 -2,-0.0 0.932 82.9 145.1 57.4 48.9 -15.4 -0.7 -7.8 33 27 A A + 0 0 54 1,-0.2 4,-0.5 2,-0.1 -1,-0.1 0.695 65.7 58.1 -87.5 -22.0 -12.9 -0.9 -10.6 34 28 A L S > S+ 0 0 77 1,-0.2 4,-2.6 2,-0.2 5,-0.3 0.568 85.5 84.3 -83.1 -9.8 -10.8 -3.5 -8.8 35 29 A A H > S+ 0 0 37 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.965 97.1 36.0 -55.4 -57.5 -13.8 -5.8 -8.6 36 30 A P H 4 S+ 0 0 91 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.718 114.5 60.7 -69.8 -21.6 -13.3 -7.3 -12.1 37 31 A K H 4 S+ 0 0 141 -4,-0.5 4,-0.2 1,-0.2 -2,-0.2 0.925 120.9 21.8 -72.0 -46.2 -9.5 -7.1 -11.6 38 32 A I H X S+ 0 0 22 -4,-2.6 4,-2.5 1,-0.1 -1,-0.2 0.382 100.8 98.0-101.2 0.9 -9.4 -9.4 -8.6 39 33 A G T < S+ 0 0 50 -4,-1.0 -2,-0.1 -5,-0.3 -1,-0.1 0.962 93.3 31.6 -51.6 -61.0 -12.7 -11.1 -9.5 40 34 A P T 4 S+ 0 0 111 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.768 114.3 65.2 -69.8 -26.5 -11.3 -14.1 -11.2 41 35 A L T 4 S- 0 0 108 -4,-0.2 -2,-0.2 -5,-0.1 -3,-0.1 0.967 99.6-132.5 -61.0 -55.8 -8.2 -14.0 -8.9 42 36 A G < + 0 0 38 -4,-2.5 -1,-0.1 1,-0.5 -4,-0.1 -0.385 68.5 97.2 135.0 -58.7 -10.1 -14.8 -5.7 43 37 A L S S- 0 0 58 1,-0.1 -1,-0.5 2,-0.0 -2,-0.1 0.138 77.1 -99.9 -53.2 178.1 -9.0 -12.3 -3.1 44 38 A S > - 0 0 56 1,-0.1 4,-1.9 -3,-0.1 5,-0.2 -0.846 9.8-141.2-110.3 144.3 -11.0 -9.1 -2.4 45 39 A P H > S+ 0 0 26 0, 0.0 4,-2.7 0, 0.0 5,-0.2 0.798 102.3 55.8 -69.7 -29.9 -10.3 -5.6 -3.7 46 40 A K H > S+ 0 0 158 2,-0.2 4,-3.1 3,-0.2 5,-0.3 0.954 109.2 43.8 -68.2 -51.5 -11.4 -4.0 -0.3 47 41 A K H > S+ 0 0 157 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.926 121.4 40.6 -59.8 -47.0 -8.9 -6.1 1.8 48 42 A V H X S+ 0 0 36 -4,-1.9 4,-1.5 2,-0.2 -2,-0.2 0.915 117.0 48.7 -68.7 -44.5 -6.1 -5.5 -0.7 49 43 A G H X S+ 0 0 28 -4,-2.7 4,-2.1 1,-0.2 -2,-0.2 0.903 111.3 49.3 -62.9 -42.6 -7.0 -1.9 -1.4 50 44 A D H X S+ 0 0 85 -4,-3.1 4,-2.9 1,-0.2 5,-0.3 0.842 103.8 62.0 -65.6 -34.0 -7.2 -1.1 2.3 51 45 A D H X S+ 0 0 73 -4,-1.5 4,-2.0 -5,-0.3 -1,-0.2 0.923 109.3 39.8 -57.9 -46.9 -3.9 -2.7 2.9 52 46 A I H X S+ 0 0 39 -4,-1.5 4,-2.9 2,-0.2 -26,-0.2 0.902 114.0 54.1 -70.0 -42.4 -2.1 -0.2 0.7 53 47 A A H < S+ 0 0 18 -4,-2.1 -2,-0.2 2,-0.2 -1,-0.2 0.926 111.3 45.1 -57.6 -47.8 -4.2 2.7 1.9 54 48 A K H >< S+ 0 0 152 -4,-2.9 3,-1.6 1,-0.2 4,-0.3 0.933 114.3 48.4 -62.6 -47.8 -3.3 2.0 5.5 55 49 A A H >< S+ 0 0 41 -4,-2.0 3,-0.7 1,-0.3 4,-0.2 0.902 113.5 47.2 -59.7 -43.0 0.4 1.5 4.7 56 50 A T T 3< S+ 0 0 0 -4,-2.9 -1,-0.3 1,-0.2 6,-0.2 0.091 84.1 103.4 -87.1 23.9 0.5 4.7 2.7 57 51 A G T X S+ 0 0 38 -3,-1.6 3,-0.9 1,-0.2 -1,-0.2 0.848 76.2 52.3 -73.7 -34.9 -1.3 6.5 5.5 58 52 A D T < S+ 0 0 140 -3,-0.7 -1,-0.2 -4,-0.3 -2,-0.1 0.804 123.8 29.3 -70.3 -29.8 1.9 8.2 6.7 59 53 A W T > S+ 0 0 91 -4,-0.2 3,-1.6 3,-0.1 2,-0.3 -0.255 84.1 162.0-124.3 44.3 2.6 9.5 3.2 60 54 A K T < + 0 0 120 -3,-0.9 -34,-0.2 1,-0.2 3,-0.1 -0.496 67.3 25.7 -69.2 126.8 -0.9 9.8 1.9 61 55 A G T 3 S+ 0 0 57 -36,-0.9 2,-0.3 1,-0.4 -1,-0.2 0.216 98.0 109.6 105.7 -13.8 -1.1 12.0 -1.2 62 56 A L S < S- 0 0 102 -3,-1.6 -37,-1.4 -6,-0.2 2,-0.6 -0.672 73.7-111.7 -96.7 151.4 2.5 11.5 -2.2 63 57 A R E +A 24 0A 138 -2,-0.3 2,-0.3 -39,-0.2 -39,-0.2 -0.716 49.9 155.5 -85.4 119.6 3.7 9.5 -5.3 64 58 A I E -A 23 0A 38 -41,-0.9 -41,-0.8 -2,-0.6 2,-0.5 -0.956 40.3-115.3-141.8 159.6 5.5 6.2 -4.3 65 59 A T E -A 22 0A 46 15,-0.3 15,-1.6 -2,-0.3 2,-0.4 -0.835 26.6-165.2-100.8 131.2 6.2 2.8 -5.8 66 60 A V E -AB 21 79A 19 -45,-1.1 -45,-1.2 -2,-0.5 2,-0.6 -0.946 10.2-146.4-118.7 135.3 4.7 -0.3 -4.3 67 61 A K E -A 20 0A 68 11,-1.7 2,-0.6 -2,-0.4 11,-0.5 -0.880 12.7-166.6-103.4 117.0 5.8 -3.9 -4.9 68 62 A L E -A 19 0A 39 -49,-2.9 -49,-2.3 -2,-0.6 2,-0.5 -0.902 3.7-170.0-106.9 117.5 3.0 -6.5 -4.8 69 63 A T E -AC 18 76A 21 7,-0.8 7,-1.2 -2,-0.6 2,-0.6 -0.913 8.2-153.5-110.1 128.7 4.1 -10.2 -4.7 70 64 A I E +AC 17 75A 95 -53,-1.0 -53,-0.6 -2,-0.5 2,-0.3 -0.885 25.4 156.9-104.2 121.0 1.7 -13.0 -5.1 71 65 A Q E > - C 0 74A 87 3,-2.7 3,-0.9 -2,-0.6 -55,-0.1 -0.974 67.6 -13.9-146.6 128.1 2.5 -16.4 -3.5 72 66 A N T 3 S- 0 0 140 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.906 129.5 -51.1 47.8 49.0 0.3 -19.2 -2.5 73 67 A R T 3 S+ 0 0 186 1,-0.2 2,-0.4 -30,-0.0 -1,-0.3 0.819 116.5 125.2 60.0 31.2 -2.8 -17.0 -2.8 74 68 A Q E < -C 71 0A 90 -3,-0.9 -3,-2.7 -31,-0.0 2,-0.4 -0.969 47.5-154.2-125.6 138.8 -1.0 -14.4 -0.6 75 69 A A E -C 70 0A 34 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.901 5.9-157.5-113.8 140.3 -0.2 -10.8 -1.4 76 70 A Q E -C 69 0A 102 -7,-1.2 -7,-0.8 -2,-0.4 2,-0.4 -0.928 1.6-157.7-118.5 140.8 2.6 -8.7 0.1 77 71 A I + 0 0 52 -2,-0.4 2,-0.3 -9,-0.2 -9,-0.1 -0.965 20.4 157.4-121.0 130.4 2.8 -4.9 0.4 78 72 A E - 0 0 118 -11,-0.5 -11,-1.7 -2,-0.4 2,-0.5 -0.981 30.5-137.7-152.7 137.6 6.1 -3.0 0.8 79 73 A V B -B 66 0A 38 -2,-0.3 -13,-0.2 -13,-0.2 -2,-0.0 -0.843 20.3-139.2-100.3 127.4 7.1 0.6 0.1 80 74 A V - 0 0 36 -15,-1.6 -15,-0.3 -2,-0.5 3,-0.1 -0.590 5.9-141.2 -85.3 144.3 10.5 1.3 -1.5 81 75 A P S S- 0 0 134 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.875 80.5 -7.0 -69.8 -39.3 12.7 4.2 -0.4 82 76 A S - 0 0 82 2,-0.0 2,-0.5 -18,-0.0 -18,-0.0 -0.947 67.5-115.0-151.5 169.4 13.8 5.1 -3.9 83 77 A A + 0 0 80 -2,-0.3 2,-0.3 -3,-0.1 0, 0.0 -0.948 44.1 139.4-116.8 129.9 13.6 4.0 -7.5 84 78 A S - 0 0 90 -2,-0.5 2,-0.9 2,-0.0 -2,-0.0 -0.974 62.7 -60.5-158.5 166.8 16.6 2.9 -9.6 85 79 A A + 0 0 108 -2,-0.3 2,-0.7 1,-0.1 -2,-0.0 -0.357 57.1 172.5 -57.0 97.4 17.8 0.3 -12.1 86 80 A L + 0 0 153 -2,-0.9 2,-0.4 0, 0.0 -1,-0.1 -0.783 19.1 132.7-114.7 87.3 17.3 -2.9 -10.1 87 81 A S + 0 0 130 -2,-0.7 -2,-0.0 1,-0.1 0, 0.0 -0.911 31.1 83.4-140.4 110.0 17.9 -5.9 -12.4 88 82 A G + 0 0 59 -2,-0.4 -1,-0.1 0, 0.0 4,-0.0 0.077 29.4 174.6 156.0 82.9 20.0 -8.8 -11.4 89 83 A P + 0 0 139 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 0.871 61.4 90.5 -69.7 -38.8 18.7 -11.8 -9.3 90 84 A S S S- 0 0 97 1,-0.1 0, 0.0 2,-0.1 0, 0.0 -0.029 98.4 -70.2 -54.5 162.9 22.0 -13.7 -9.7 91 85 A S 0 0 112 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.160 360.0 360.0 -55.5 149.5 24.7 -13.3 -7.0 92 86 A G 0 0 126 -3,-0.1 -1,-0.2 -4,-0.0 -2,-0.1 0.946 360.0 360.0 44.5 360.0 26.5 -10.0 -7.0