==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WID . COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAV1; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR K.YAMASAKI,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL . 117 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8622.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 59.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 33 28.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 182 A R 0 0 241 0, 0.0 2,-0.1 0, 0.0 97,-0.1 0.000 360.0 360.0 360.0-172.6 -16.8 8.1 6.3 2 183 A S - 0 0 110 1,-0.1 95,-0.3 94,-0.0 2,-0.1 -0.428 360.0-118.3 -85.8 162.7 -15.2 5.8 3.7 3 184 A A - 0 0 34 93,-0.1 2,-0.4 -2,-0.1 93,-0.2 -0.214 21.6-116.9 -90.1-176.3 -12.0 6.4 1.9 4 185 A E E -A 95 0A 136 91,-1.6 91,-1.8 -2,-0.1 2,-0.1 -0.991 25.6-111.0-130.3 131.3 -11.2 6.8 -1.8 5 186 A A E -A 94 0A 65 -2,-0.4 89,-0.3 89,-0.2 3,-0.1 -0.356 29.9-175.8 -59.9 128.3 -9.1 4.5 -4.0 6 187 A L E - 0 0 21 87,-2.7 2,-0.3 1,-0.3 88,-0.2 0.921 62.5 -19.8 -90.2 -59.3 -5.9 6.3 -5.1 7 188 A F E -A 93 0A 2 86,-1.4 86,-1.7 2,-0.0 2,-0.6 -0.962 52.8-145.8-156.6 135.9 -4.2 3.9 -7.4 8 189 A E E +A 92 0A 120 -2,-0.3 2,-0.3 84,-0.2 84,-0.3 -0.912 25.7 171.8-108.5 118.7 -4.5 0.1 -8.1 9 190 A K E -A 91 0A 51 82,-3.0 82,-2.9 -2,-0.6 2,-0.3 -0.870 30.6-113.8-123.8 157.4 -1.3 -1.7 -9.1 10 191 A A E -A 90 0A 64 -2,-0.3 2,-0.6 80,-0.3 80,-0.2 -0.683 28.1-119.8 -91.9 143.0 -0.4 -5.3 -9.5 11 192 A V - 0 0 7 78,-2.0 77,-1.6 -2,-0.3 78,-0.1 -0.717 28.1-147.6 -85.0 119.3 2.1 -7.1 -7.3 12 193 A T >> - 0 0 71 -2,-0.6 4,-1.0 75,-0.2 3,-0.9 -0.373 28.3-105.1 -81.4 163.0 5.1 -8.5 -9.2 13 194 A P T 34 S+ 0 0 95 0, 0.0 74,-0.1 0, 0.0 -1,-0.1 0.737 121.4 59.5 -58.9 -22.7 7.0 -11.7 -8.2 14 195 A S T >4 S+ 0 0 69 1,-0.2 3,-1.4 2,-0.2 6,-0.7 0.843 95.1 60.8 -75.1 -34.8 9.8 -9.4 -6.9 15 196 A D T <4 S+ 0 0 3 -3,-0.9 -1,-0.2 1,-0.3 -4,-0.0 0.848 120.4 26.7 -60.6 -34.7 7.5 -7.7 -4.4 16 197 A V T 3< S+ 0 0 26 -4,-1.0 -1,-0.3 4,-0.1 71,-0.2 -0.069 110.3 90.1-118.4 30.9 6.9 -11.1 -2.7 17 198 A G S < S- 0 0 19 -3,-1.4 -3,-0.1 4,-0.2 -2,-0.1 0.353 103.3 -46.0 -96.9-131.4 10.2 -12.7 -3.7 18 199 A K S S+ 0 0 193 1,-0.2 -4,-0.1 2,-0.1 -3,-0.1 0.920 137.4 49.1 -71.9 -45.5 13.5 -12.8 -1.9 19 200 A L S S- 0 0 108 -5,-0.2 -1,-0.2 2,-0.1 -4,-0.1 0.907 83.8-163.5 -60.6 -43.6 13.5 -9.0 -1.1 20 201 A N + 0 0 56 -6,-0.7 2,-0.4 1,-0.2 57,-0.2 0.872 40.5 135.3 59.3 38.2 10.0 -9.2 0.3 21 202 A R - 0 0 96 -7,-0.5 -1,-0.2 55,-0.1 52,-0.2 -0.943 54.2-123.3-121.5 141.5 9.7 -5.4 -0.0 22 203 A L E -B 72 0A 1 50,-1.7 50,-2.1 -2,-0.4 2,-0.4 -0.488 24.1-158.2 -80.5 150.3 6.9 -3.3 -1.4 23 204 A V E -B 71 0A 37 48,-0.3 48,-0.3 -2,-0.2 -8,-0.0 -0.990 7.5-168.9-133.3 140.2 7.4 -0.8 -4.2 24 205 A I E -B 70 0A 0 46,-3.1 46,-1.4 -2,-0.4 -2,-0.0 -0.993 20.2-126.9-131.4 131.4 5.4 2.2 -5.3 25 206 A P > - 0 0 20 0, 0.0 4,-0.8 0, 0.0 44,-0.1 -0.142 12.0-132.1 -68.5 168.0 5.8 4.3 -8.5 26 207 A K H > S+ 0 0 90 2,-0.2 4,-0.7 1,-0.1 5,-0.3 0.806 99.5 70.1 -90.2 -35.4 6.3 8.0 -8.6 27 208 A H H 4 S+ 0 0 132 1,-0.2 4,-0.3 2,-0.2 -1,-0.1 0.755 116.1 28.1 -53.8 -24.8 3.7 8.8 -11.3 28 209 A H H >>S+ 0 0 62 2,-0.1 4,-1.1 3,-0.1 5,-0.8 0.660 117.7 57.3-108.0 -26.6 1.2 7.9 -8.6 29 210 A A H <5S+ 0 0 3 -4,-0.8 -2,-0.2 3,-0.2 -3,-0.1 0.204 105.8 53.9 -90.2 15.4 3.2 8.8 -5.5 30 211 A E T <5S+ 0 0 96 -4,-0.7 -1,-0.2 5,-0.0 -3,-0.1 0.704 114.4 32.7-114.5 -39.3 3.6 12.4 -6.8 31 212 A K T 45S+ 0 0 181 -4,-0.3 -2,-0.1 -5,-0.3 -3,-0.1 0.757 136.1 25.5 -89.7 -29.0 0.0 13.5 -7.5 32 213 A H T <5S+ 0 0 63 -4,-1.1 -3,-0.2 1,-0.2 -4,-0.1 0.870 117.7 55.5 -98.4 -57.3 -1.6 11.5 -4.7 33 214 A F S > -C 55 0A 5 4,-2.1 4,-1.2 53,-0.1 3,-0.9 -0.978 6.7-144.7-124.5 130.2 -7.1 -3.3 7.6 52 233 A V T 34 S+ 0 0 136 -2,-0.4 -1,-0.1 53,-0.4 54,-0.1 0.706 100.7 67.0 -61.6 -19.2 -10.7 -4.2 6.7 53 234 A N T 34 S- 0 0 119 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 -0.135 129.4 -90.3 -94.5 37.7 -10.2 -7.3 8.9 54 235 A G T <4 S+ 0 0 65 -3,-0.9 2,-0.3 1,-0.2 -2,-0.2 0.960 90.3 120.6 54.5 57.9 -9.9 -5.2 12.1 55 236 A K E < -C 51 0A 114 -4,-1.2 -4,-2.1 2,-0.0 2,-0.3 -0.977 52.8-134.4-147.9 158.6 -6.1 -4.8 11.9 56 237 A V E -C 50 0A 95 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.884 17.3-173.9-117.9 148.7 -3.5 -2.1 11.7 57 238 A W E -C 49 0A 13 -8,-2.1 -8,-1.9 -2,-0.3 2,-0.4 -1.000 7.7-165.3-143.2 142.2 -0.4 -1.9 9.5 58 239 A R E -C 48 0A 143 -2,-0.3 -10,-0.2 -10,-0.2 2,-0.2 -0.970 9.7-172.2-132.9 118.4 2.6 0.5 9.3 59 240 A F E -C 47 0A 0 -12,-0.6 -12,-2.3 -2,-0.4 2,-0.5 -0.642 21.0-123.7-105.2 163.9 5.0 0.7 6.4 60 241 A R E -CE 46 73A 136 13,-2.5 13,-2.0 14,-0.6 2,-0.3 -0.937 18.0-140.5-113.6 121.7 8.2 2.6 5.9 61 242 A Y E +CE 45 72A 22 -16,-3.0 -16,-1.3 -2,-0.5 2,-0.3 -0.603 32.3 164.1 -79.9 134.2 8.7 5.0 3.0 62 243 A S E - E 0 71A 47 9,-1.5 9,-0.8 -2,-0.3 2,-0.7 -0.859 41.4-107.7-141.8 176.0 12.1 5.0 1.3 63 244 A Y E + E 0 70A 110 -2,-0.3 7,-0.2 7,-0.2 2,-0.2 -0.866 53.1 147.9-113.7 97.0 14.0 6.1 -1.8 64 245 A W E > > + E 0 69A 105 5,-3.5 5,-1.2 -2,-0.7 3,-0.8 -0.545 37.3 47.4-118.3-175.6 14.8 3.1 -4.0 65 246 A N T 3>5S- 0 0 121 1,-0.3 2,-3.3 -2,-0.2 4,-1.1 0.930 133.3 -32.6 43.7 90.0 15.3 2.2 -7.7 66 247 A S T 345S- 0 0 132 1,-0.2 -1,-0.3 2,-0.1 -3,-0.0 -0.326 110.7 -76.3 70.8 -63.4 17.5 5.1 -8.9 67 248 A S T <45S+ 0 0 48 -2,-3.3 -1,-0.2 -3,-0.8 -3,-0.2 -0.124 123.8 70.5 170.4 -57.5 15.9 7.5 -6.4 68 249 A Q T 45S+ 0 0 97 -5,-0.1 2,-0.7 -3,-0.1 -2,-0.1 0.600 78.1 100.4 -60.9 -11.0 12.4 8.6 -7.5 69 250 A S E << - E 0 64A 27 -5,-1.2 -5,-3.5 -4,-1.1 2,-0.6 -0.698 64.8-153.5 -83.4 114.8 11.2 5.0 -6.8 70 251 A Y E -BE 24 63A 33 -46,-1.4 -46,-3.1 -2,-0.7 2,-0.3 -0.784 12.6-167.8 -91.7 118.5 9.4 5.0 -3.4 71 252 A V E -BE 23 62A 4 -9,-0.8 -9,-1.5 -2,-0.6 2,-0.8 -0.793 18.5-137.2-106.9 148.9 9.6 1.6 -1.7 72 253 A L E +BE 22 61A 0 -50,-2.1 -50,-1.7 -2,-0.3 -11,-0.2 -0.805 30.8 178.5-107.5 91.8 7.6 0.4 1.3 73 254 A T E + E 0 60A 21 -13,-2.0 -13,-2.5 -2,-0.8 -52,-0.1 -0.484 45.6 32.5 -89.7 162.0 9.9 -1.5 3.6 74 255 A K S S+ 0 0 102 -15,-0.2 -14,-0.6 -2,-0.2 -52,-0.1 0.684 107.4 42.5 63.5 128.2 9.0 -3.0 7.0 75 256 A G S > S+ 0 0 9 -16,-0.1 4,-1.7 -18,-0.0 5,-0.1 -0.003 89.1 91.1 96.7 -29.5 5.5 -4.4 7.6 76 257 A W H > S+ 0 0 1 2,-0.2 4,-3.9 -4,-0.2 5,-0.3 0.922 86.6 48.7 -64.1 -45.8 5.4 -6.0 4.2 77 258 A S H > S+ 0 0 59 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.950 113.3 45.7 -59.4 -52.0 6.7 -9.3 5.4 78 259 A R H > S+ 0 0 176 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.812 118.8 45.2 -61.6 -30.5 4.3 -9.5 8.4 79 260 A F H X S+ 0 0 2 -4,-1.7 4,-2.5 2,-0.2 6,-0.4 0.954 111.1 48.4 -77.7 -54.9 1.5 -8.5 6.0 80 261 A V H <>S+ 0 0 12 -4,-3.9 5,-0.7 1,-0.2 -2,-0.2 0.787 117.3 46.1 -56.3 -28.3 2.3 -10.9 3.1 81 262 A K H <5S+ 0 0 163 -4,-1.9 -1,-0.2 -5,-0.3 -2,-0.2 0.863 110.0 52.1 -82.6 -39.6 2.6 -13.6 5.7 82 263 A E H <5S+ 0 0 81 -4,-1.5 -2,-0.2 1,-0.2 -3,-0.2 0.963 124.3 27.0 -60.9 -54.8 -0.6 -12.7 7.6 83 264 A K T <5S- 0 0 66 -4,-2.5 -1,-0.2 -5,-0.1 -2,-0.2 0.398 106.6-124.6 -88.9 2.3 -2.8 -12.7 4.5 84 265 A N T 5 - 0 0 119 -5,-0.4 -3,-0.2 1,-0.1 -4,-0.2 0.827 45.3-176.9 57.8 32.0 -0.5 -15.2 2.8 85 266 A L < + 0 0 14 -5,-0.7 2,-0.3 -6,-0.4 -1,-0.1 -0.148 6.8 165.0 -58.5 156.0 -0.2 -12.7 -0.1 86 267 A R > - 0 0 164 -3,-0.1 3,-1.1 -75,-0.0 -75,-0.1 -0.906 40.2 -53.0-158.2-176.5 1.9 -13.6 -3.1 87 268 A A T 3 S+ 0 0 43 -2,-0.3 -75,-0.2 1,-0.2 3,-0.1 -0.408 110.5 43.0 -70.4 143.9 2.6 -12.8 -6.8 88 269 A G T 3 S+ 0 0 71 -77,-1.6 -1,-0.2 1,-0.4 22,-0.2 0.056 89.1 105.8 109.9 -24.3 -0.3 -12.5 -9.2 89 270 A D < - 0 0 21 -3,-1.1 -78,-2.0 -78,-0.1 2,-0.4 -0.168 69.7-112.9 -80.0 178.2 -2.6 -10.5 -6.8 90 271 A V E -AF 10 108A 38 18,-2.2 18,-1.7 -80,-0.2 2,-0.5 -0.962 19.2-155.0-120.4 131.6 -3.4 -6.8 -7.0 91 272 A V E +AF 9 107A 5 -82,-2.9 -82,-3.0 -2,-0.4 2,-0.4 -0.911 16.2 177.7-108.8 123.6 -2.4 -4.2 -4.5 92 273 A S E -AF 8 106A 12 14,-2.6 14,-2.7 -2,-0.5 2,-0.4 -0.950 10.8-159.7-125.9 145.0 -4.4 -1.0 -4.2 93 274 A F E -AF 7 105A 0 -86,-1.7 -87,-2.7 -2,-0.4 -86,-1.4 -0.962 8.9-174.9-125.8 141.7 -4.1 2.0 -1.8 94 275 A S E -AF 5 104A 24 10,-2.1 10,-1.0 -2,-0.4 2,-0.3 -0.650 12.1-141.0-123.6-179.2 -6.6 4.6 -0.8 95 276 A R E -AF 4 103A 77 -91,-1.8 -91,-1.6 -2,-0.2 2,-0.3 -0.986 8.1-140.1-150.1 136.5 -6.8 7.8 1.3 96 277 A S - 0 0 12 6,-1.8 6,-0.2 -2,-0.3 -93,-0.1 -0.765 9.7-144.3 -98.8 142.0 -9.3 9.3 3.7 97 278 A N + 0 0 95 -2,-0.3 4,-0.1 -95,-0.3 -1,-0.1 0.027 62.2 122.5 -90.4 27.3 -10.1 13.0 3.8 98 279 A G S S- 0 0 55 2,-0.2 3,-0.0 4,-0.1 -3,-0.0 0.512 85.4 -75.1 -63.5-143.1 -10.5 12.9 7.6 99 280 A Q S S+ 0 0 209 2,-0.0 2,-0.2 0, 0.0 -1,-0.1 0.775 113.4 42.4 -91.9 -32.0 -8.5 15.0 10.0 100 281 A D S S- 0 0 124 1,-0.0 2,-1.0 0, 0.0 -2,-0.2 -0.543 96.1 -97.6-108.6 175.9 -5.2 13.1 9.7 101 282 A Q + 0 0 121 -2,-0.2 -53,-0.3 -4,-0.1 2,-0.1 -0.328 61.5 162.6 -89.9 52.5 -3.3 11.5 6.8 102 283 A Q - 0 0 61 -2,-1.0 -6,-1.8 -6,-0.2 2,-0.3 -0.437 15.6-169.4 -73.6 145.9 -4.7 8.1 7.4 103 284 A L E -dF 49 95A 7 -55,-1.7 -53,-1.7 -8,-0.2 2,-0.3 -0.812 11.0-143.5-130.7 171.1 -4.5 5.5 4.6 104 285 A Y E -dF 50 94A 70 -10,-1.0 -10,-2.1 -55,-0.3 2,-0.5 -0.997 6.4-143.6-140.3 143.7 -5.9 2.0 3.8 105 286 A I E + F 0 93A 2 -55,-1.6 2,-0.4 -2,-0.3 -53,-0.4 -0.928 21.1 178.1-111.6 120.5 -4.5 -1.1 2.1 106 287 A G E - F 0 92A 29 -14,-2.7 -14,-2.6 -2,-0.5 2,-0.2 -0.979 7.2-165.0-126.4 129.6 -6.8 -3.2 -0.1 107 288 A W E - F 0 91A 89 -2,-0.4 2,-0.3 -16,-0.2 -16,-0.2 -0.602 4.0-153.7-105.6 168.0 -5.8 -6.3 -2.1 108 289 A K E - F 0 90A 103 -18,-1.7 -18,-2.2 -2,-0.2 2,-0.4 -0.999 8.6-165.2-145.3 139.6 -7.7 -8.1 -4.8 109 290 A S - 0 0 82 -2,-0.3 2,-0.4 -20,-0.2 -20,-0.1 -0.805 14.0-155.2-128.3 90.8 -7.6 -11.7 -6.1 110 291 A R + 0 0 244 -2,-0.4 -2,-0.0 -22,-0.2 3,-0.0 -0.504 22.8 164.9 -67.9 119.1 -9.2 -12.1 -9.5 111 292 A S - 0 0 79 -2,-0.4 -1,-0.2 2,-0.2 3,-0.1 0.834 43.1-122.3-100.8 -49.7 -10.5 -15.7 -9.9 112 293 A G S S+ 0 0 69 1,-0.6 2,-0.0 4,-0.1 -2,-0.0 -0.390 77.8 82.2 139.3 -60.5 -12.8 -15.6 -12.8 113 294 A S - 0 0 73 1,-0.1 -1,-0.6 -3,-0.0 -2,-0.2 -0.320 69.3-135.2 -75.4 160.6 -16.3 -16.8 -11.8 114 295 A D S S+ 0 0 160 1,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 0.808 104.2 55.6 -84.8 -33.2 -18.8 -14.5 -10.1 115 296 A L S S+ 0 0 160 2,-0.0 -1,-0.2 -3,-0.0 -2,-0.0 0.775 86.8 104.4 -69.8 -26.5 -19.8 -17.1 -7.4 116 297 A D 0 0 85 1,-0.1 -5,-0.1 0, 0.0 -4,-0.1 -0.193 360.0 360.0 -56.3 146.6 -16.1 -17.5 -6.4 117 298 A A 0 0 142 -6,-0.0 -1,-0.1 0, 0.0 -6,-0.0 0.922 360.0 360.0 -79.5 360.0 -15.2 -15.8 -3.1