==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-MAY-04 1WIZ . COMPND 2 MOLECULE: DNA-BINDING PROTEIN SATB2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.INOUE,S.NAMEKI,F.HAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7533.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 46 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 57.2 29.5 13.2 -37.4 2 2 A S + 0 0 118 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.149 360.0 77.0 67.8 168.7 28.9 10.0 -35.5 3 3 A S + 0 0 127 1,-0.1 -1,-0.1 0, 0.0 2,-0.1 0.449 42.0 140.1 69.1 145.0 27.3 9.8 -32.0 4 4 A G + 0 0 75 1,-0.1 2,-0.2 -3,-0.0 -1,-0.1 -0.017 10.8 135.5 144.5 108.1 23.6 10.1 -31.5 5 5 A S + 0 0 127 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.825 12.7 146.6-172.8 130.6 21.3 8.3 -29.1 6 6 A S + 0 0 115 -2,-0.2 2,-0.2 0, 0.0 0, 0.0 -0.959 8.4 122.3-159.0 169.9 18.5 9.2 -26.7 7 7 A G + 0 0 52 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.821 2.7 150.0 171.6-128.3 15.2 8.0 -25.3 8 8 A K - 0 0 159 -2,-0.2 -1,-0.2 2,-0.0 0, 0.0 0.941 40.0-144.4 61.9 95.8 13.9 7.4 -21.8 9 9 A P - 0 0 128 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.075 8.2-124.1 -75.1-169.0 10.1 8.0 -21.8 10 10 A E - 0 0 168 2,-0.0 2,-0.0 0, 0.0 -2,-0.0 -0.995 13.2-124.7-146.4 137.5 8.0 9.5 -19.0 11 11 A P - 0 0 118 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.243 20.2-170.9 -75.0 166.5 4.9 8.4 -17.2 12 12 A T + 0 0 136 2,-0.0 2,-0.3 -2,-0.0 -2,-0.0 -0.654 18.5 147.8-164.4 99.8 1.7 10.3 -16.9 13 13 A N - 0 0 136 -2,-0.2 2,-0.3 3,-0.0 3,-0.1 -0.855 23.5-159.6-131.5 166.0 -1.2 9.4 -14.6 14 14 A S - 0 0 102 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.936 68.1 -19.7-152.8 124.8 -3.8 11.2 -12.6 15 15 A S S S- 0 0 84 -2,-0.3 -1,-0.1 1,-0.0 59,-0.0 0.922 79.2-152.1 39.7 79.6 -5.9 10.0 -9.7 16 16 A V - 0 0 23 1,-0.1 2,-0.1 58,-0.1 62,-0.1 -0.151 17.0 -95.8 -72.0 172.3 -5.4 6.3 -10.2 17 17 A E - 0 0 156 60,-0.1 2,-0.4 57,-0.0 -1,-0.1 -0.354 30.8-137.9 -86.4 169.5 -7.9 3.7 -9.1 18 18 A V - 0 0 34 -2,-0.1 56,-0.1 44,-0.1 55,-0.0 -0.988 9.6-132.5-132.9 141.1 -7.9 1.8 -5.8 19 19 A S > - 0 0 35 -2,-0.4 3,-1.1 54,-0.1 4,-0.1 -0.567 15.1-130.6 -90.8 155.6 -8.7 -1.9 -5.2 20 20 A P T 3 S+ 0 0 85 0, 0.0 3,-0.5 0, 0.0 4,-0.2 0.716 111.4 54.9 -75.0 -22.3 -10.9 -3.2 -2.4 21 21 A D T 3> S+ 0 0 97 1,-0.2 4,-3.0 2,-0.1 5,-0.2 0.154 70.3 119.5 -94.8 16.6 -8.2 -5.6 -1.4 22 22 A I H <> S+ 0 0 1 -3,-1.1 4,-2.3 1,-0.2 -1,-0.2 0.853 75.3 52.6 -48.1 -38.7 -5.8 -2.7 -1.0 23 23 A Y H > S+ 0 0 13 -3,-0.5 4,-2.3 2,-0.2 5,-0.2 0.979 109.3 44.2 -61.9 -60.4 -5.6 -3.8 2.6 24 24 A Q H > S+ 0 0 122 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.828 111.4 59.1 -53.9 -34.0 -4.7 -7.4 2.0 25 25 A Q H X S+ 0 0 53 -4,-3.0 4,-3.9 2,-0.2 -1,-0.2 0.966 107.1 43.2 -59.6 -56.9 -2.3 -6.1 -0.7 26 26 A V H X S+ 0 0 1 -4,-2.3 4,-3.4 2,-0.2 5,-0.3 0.965 114.5 49.9 -52.7 -60.2 -0.3 -4.0 1.7 27 27 A R H X S+ 0 0 116 -4,-2.3 4,-2.7 1,-0.3 -1,-0.2 0.898 115.8 43.5 -44.5 -51.2 -0.3 -6.7 4.4 28 28 A D H X S+ 0 0 80 -4,-2.8 4,-0.9 -5,-0.2 -1,-0.3 0.921 111.7 54.5 -61.9 -45.8 0.9 -9.2 1.7 29 29 A E H >X S+ 0 0 12 -4,-3.9 4,-3.4 1,-0.2 3,-0.7 0.919 110.9 45.1 -53.3 -48.8 3.3 -6.7 0.4 30 30 A L H 3X>S+ 0 0 14 -4,-3.4 4,-1.9 1,-0.3 5,-1.0 0.928 112.2 50.4 -61.2 -47.2 4.9 -6.2 3.8 31 31 A K H 3<5S+ 0 0 177 -4,-2.7 -1,-0.3 -5,-0.3 -2,-0.2 0.611 115.2 48.5 -66.3 -11.1 4.9 -10.0 4.3 32 32 A R H <<5S+ 0 0 138 -4,-0.9 -2,-0.2 -3,-0.7 -1,-0.2 0.886 121.0 29.6 -92.6 -52.8 6.6 -10.0 0.9 33 33 A A H <5S- 0 0 25 -4,-3.4 -2,-0.2 -5,-0.1 -3,-0.2 0.486 101.2-133.5 -85.1 -4.8 9.3 -7.4 1.3 34 34 A S T <5 + 0 0 96 -4,-1.9 -3,-0.2 -5,-0.3 2,-0.2 0.885 57.3 143.9 52.1 43.0 9.3 -8.3 5.0 35 35 A V < - 0 0 18 -5,-1.0 2,-0.4 -6,-0.2 -1,-0.2 -0.454 53.9 -97.9-103.7 178.2 9.2 -4.6 5.8 36 36 A S > - 0 0 72 -2,-0.2 4,-2.5 1,-0.1 5,-0.3 -0.833 27.3-119.1-102.8 137.4 7.6 -2.7 8.6 37 37 A Q H > S+ 0 0 49 -2,-0.4 4,-2.9 1,-0.2 5,-0.2 0.771 118.2 55.2 -39.8 -30.7 4.2 -0.9 8.1 38 38 A A H > S+ 0 0 37 2,-0.2 4,-3.3 3,-0.2 9,-0.3 0.992 107.2 43.7 -67.9 -64.1 6.3 2.1 9.0 39 39 A V H > S+ 0 0 16 2,-0.2 4,-2.2 1,-0.2 -2,-0.2 0.917 122.4 41.6 -45.8 -53.0 8.9 1.7 6.3 40 40 A F H >X S+ 0 0 0 -4,-2.5 4,-1.1 2,-0.2 3,-0.7 0.987 112.7 50.0 -59.1 -65.1 6.2 0.9 3.8 41 41 A A H 3X>S+ 0 0 0 -4,-2.9 4,-3.0 1,-0.3 6,-0.8 0.833 113.1 51.5 -42.3 -38.4 3.7 3.5 4.9 42 42 A R H 3X5S+ 0 0 122 -4,-3.3 4,-0.9 4,-0.3 -1,-0.3 0.905 117.3 35.9 -67.0 -43.5 6.6 5.9 4.6 43 43 A V H <<5S+ 0 0 32 -4,-2.2 -2,-0.2 -3,-0.7 -1,-0.2 0.279 120.0 55.5 -91.7 8.7 7.4 4.7 1.1 44 44 A A H <5S- 0 0 12 -4,-1.1 -2,-0.2 -3,-0.4 -3,-0.2 0.831 139.9 -25.4-102.7 -57.4 3.7 4.3 0.5 45 45 A F H <5S- 0 0 23 -4,-3.0 -3,-0.2 -5,-0.2 -2,-0.1 0.059 93.8 -92.2-148.7 24.6 2.3 7.7 1.2 46 46 A N S < - 0 0 70 -2,-0.2 4,-0.9 -7,-0.1 -1,-0.1 -0.157 29.6-104.4-107.0-157.9 3.7 6.1 10.0 49 49 A Q H > S+ 0 0 95 2,-0.2 4,-4.5 3,-0.2 5,-0.4 0.871 109.5 62.8 -97.7 -57.7 2.5 2.8 11.5 50 50 A G H > S+ 0 0 55 1,-0.2 4,-0.7 2,-0.2 -1,-0.1 0.751 115.4 40.6 -39.5 -28.8 -0.0 3.7 14.1 51 51 A L H >> S+ 0 0 27 2,-0.2 4,-1.9 3,-0.1 3,-1.1 0.950 115.2 44.6 -84.9 -65.9 -1.9 5.1 11.1 52 52 A L H 3X S+ 0 0 0 -4,-0.9 4,-1.1 1,-0.3 -2,-0.2 0.846 111.6 58.9 -46.4 -38.2 -1.4 2.5 8.5 53 53 A S H >X S+ 0 0 9 -4,-4.5 4,-1.0 1,-0.2 3,-0.6 0.909 105.4 46.8 -58.4 -44.9 -2.2 0.0 11.2 54 54 A E H S+ 0 0 80 -3,-1.1 4,-3.1 -4,-0.7 5,-0.6 0.787 108.8 55.9 -67.4 -28.4 -5.5 1.7 11.7 55 55 A I H 3<5S+ 0 0 3 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.698 111.9 43.0 -75.5 -20.3 -6.0 1.6 8.0 56 56 A L H <<5S+ 0 0 15 -4,-1.1 -2,-0.2 -3,-0.6 -1,-0.2 0.554 118.6 45.6 -98.3 -13.7 -5.4 -2.2 8.1 57 57 A R H <5S+ 0 0 195 -4,-1.0 -2,-0.2 -5,-0.2 -3,-0.2 0.871 126.5 25.9 -93.2 -49.4 -7.6 -2.5 11.2 58 58 A K T <5S- 0 0 149 -4,-3.1 3,-0.3 -5,-0.1 -3,-0.2 0.760 86.9-157.4 -84.5 -28.7 -10.6 -0.4 10.2 59 59 A E < - 0 0 60 -5,-0.6 2,-0.2 1,-0.2 -4,-0.1 0.907 15.4-143.9 49.3 48.8 -9.9 -1.0 6.5 60 60 A E - 0 0 70 -6,-0.2 -1,-0.2 1,-0.1 5,-0.1 -0.222 22.8-113.8 -46.8 104.6 -11.9 2.1 5.7 61 61 A D >> - 0 0 91 -3,-0.3 4,-3.2 -2,-0.2 3,-0.8 -0.093 12.9-132.3 -44.1 138.1 -13.5 1.0 2.5 62 62 A P T 34 S+ 0 0 26 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.443 105.1 65.0 -75.0 0.3 -12.2 3.1 -0.5 63 63 A R T 34 S+ 0 0 233 -43,-0.1 -2,-0.1 1,-0.0 -3,-0.0 0.756 120.4 16.6 -91.0 -30.5 -15.8 3.6 -1.4 64 64 A T T <4 S+ 0 0 89 -3,-0.8 -3,-0.1 2,-0.1 6,-0.1 0.588 96.2 122.6-113.4 -22.6 -16.7 5.6 1.6 65 65 A A < - 0 0 7 -4,-3.2 2,-0.2 1,-0.1 -4,-0.0 0.020 66.8-110.6 -40.4 149.0 -13.2 6.5 2.8 66 66 A S >> - 0 0 75 1,-0.1 4,-3.6 4,-0.0 3,-0.8 -0.580 25.8-105.5 -88.4 151.4 -12.7 10.2 3.0 67 67 A Q H 3> S+ 0 0 162 1,-0.3 4,-4.0 2,-0.2 5,-0.2 0.843 122.4 60.4 -39.0 -44.3 -10.4 12.2 0.7 68 68 A S H 3> S+ 0 0 95 2,-0.2 4,-0.8 1,-0.2 -1,-0.3 0.941 116.1 30.0 -50.1 -56.2 -8.0 12.3 3.6 69 69 A L H X> S+ 0 0 18 -3,-0.8 4,-3.0 2,-0.2 3,-1.5 0.946 118.2 56.3 -69.3 -50.6 -7.7 8.5 3.7 70 70 A L H 3X S+ 0 0 41 -4,-3.6 4,-3.9 1,-0.3 5,-0.3 0.874 99.5 62.4 -47.8 -42.2 -8.4 8.1 -0.0 71 71 A V H 3X S+ 0 0 87 -4,-4.0 4,-1.4 -5,-0.4 -1,-0.3 0.877 111.5 37.7 -51.4 -41.0 -5.4 10.4 -0.6 72 72 A N H X S+ 0 0 27 -4,-1.4 4,-1.5 -5,-0.3 3,-0.7 0.966 111.5 49.0 -57.7 -56.8 -0.9 6.7 -2.9 76 76 A M H >X S+ 0 0 2 -4,-3.6 4,-2.7 1,-0.3 3,-1.9 0.942 110.5 48.5 -46.6 -62.7 -0.5 3.2 -1.6 77 77 A Q H 3< S+ 0 0 12 -4,-2.8 4,-0.3 1,-0.3 -1,-0.3 0.768 109.4 56.8 -50.6 -27.1 -2.1 1.6 -4.6 78 78 A N H << S+ 0 0 79 -4,-1.3 4,-0.5 -3,-0.7 -1,-0.3 0.805 109.8 43.6 -74.4 -31.0 0.3 3.8 -6.6 79 79 A F H X< S+ 0 0 9 -3,-1.9 3,-1.0 -4,-1.5 -2,-0.2 0.852 106.6 58.1 -80.8 -38.5 3.2 2.3 -4.7 80 80 A L T 3< S+ 0 0 19 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.610 101.9 60.5 -66.5 -11.0 2.0 -1.3 -5.0 81 81 A N T 3 S+ 0 0 109 -5,-0.3 -1,-0.3 -4,-0.3 -2,-0.2 0.774 83.4 102.5 -85.0 -30.4 2.1 -0.6 -8.7 82 82 A L S < S- 0 0 73 -3,-1.0 2,-0.3 -4,-0.5 -3,-0.0 0.045 90.7 -80.4 -47.7 163.9 5.8 0.1 -8.6 83 83 A P >> - 0 0 61 0, 0.0 4,-2.3 0, 0.0 3,-1.6 -0.542 31.6-127.4 -75.0 133.6 8.2 -2.6 -9.9 84 84 A E H 3> S+ 0 0 103 1,-0.3 4,-2.6 -2,-0.3 5,-0.2 0.840 113.8 58.3 -45.1 -39.1 8.9 -5.4 -7.4 85 85 A V H 3> S+ 0 0 97 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.877 110.5 42.7 -59.7 -39.2 12.5 -4.7 -8.1 86 86 A E H X> S+ 0 0 73 -3,-1.6 4,-4.4 2,-0.2 3,-0.6 0.977 111.6 50.8 -70.5 -59.1 11.9 -1.1 -7.0 87 87 A R H 3X S+ 0 0 11 -4,-2.3 4,-2.7 1,-0.3 5,-0.2 0.865 108.8 55.1 -45.7 -43.0 9.8 -1.8 -3.9 88 88 A D H 3X S+ 0 0 82 -4,-2.6 4,-1.6 -5,-0.3 -1,-0.3 0.914 117.7 34.5 -57.7 -45.5 12.5 -4.3 -2.9 89 89 A R H