==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-04 1WJI . COMPND 2 MOLECULE: TUDOR DOMAIN CONTAINING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.O.KAMATARI,N.TOCHIO,T.NAKANISHI,K.MIYAMOTO,H.LI, . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5218.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 38.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 114 0, 0.0 2,-0.4 0, 0.0 3,-0.3 0.000 360.0 360.0 360.0 162.0 18.8 5.9 4.4 2 2 A S + 0 0 102 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.911 360.0 0.1-113.8 137.4 20.4 9.2 3.4 3 3 A S S S- 0 0 129 -2,-0.4 -1,-0.2 2,-0.1 0, 0.0 0.888 130.3 -57.6 56.7 41.1 20.5 12.3 5.6 4 4 A G S S+ 0 0 78 -3,-0.3 2,-0.3 1,-0.1 -2,-0.1 0.879 79.1 175.2 55.1 106.9 18.7 10.4 8.4 5 5 A S - 0 0 68 1,-0.2 -1,-0.1 3,-0.0 -2,-0.1 -0.967 33.9 -86.4-141.6 156.2 15.3 9.1 7.2 6 6 A S - 0 0 55 -2,-0.3 -1,-0.2 1,-0.2 4,-0.1 0.164 56.0 -88.9 -49.3 176.6 12.5 7.0 8.5 7 7 A G S S+ 0 0 49 2,-0.1 28,-0.4 -6,-0.0 2,-0.3 0.021 100.1 95.9 -82.6 30.7 12.6 3.2 8.2 8 8 A V S S- 0 0 13 26,-0.1 2,-1.0 27,-0.1 3,-0.1 -0.883 76.8-123.2-122.0 153.5 10.9 3.5 4.8 9 9 A D >> - 0 0 73 -2,-0.3 4,-2.3 1,-0.2 3,-1.8 -0.780 16.3-160.4 -98.1 94.4 12.2 3.5 1.3 10 10 A E H 3> S+ 0 0 91 -2,-1.0 4,-2.5 1,-0.3 5,-0.3 0.868 92.4 59.0 -35.8 -54.3 10.9 6.7 -0.3 11 11 A K H 3> S+ 0 0 176 1,-0.3 4,-1.4 2,-0.2 -1,-0.3 0.878 111.4 40.8 -45.1 -45.1 11.6 5.2 -3.7 12 12 A A H <> S+ 0 0 4 -3,-1.8 4,-1.3 2,-0.2 -1,-0.3 0.854 114.0 54.5 -73.4 -36.2 9.2 2.4 -2.8 13 13 A L H >X S+ 0 0 4 -4,-2.3 4,-3.0 2,-0.2 3,-1.0 0.990 109.1 44.2 -60.8 -64.0 6.7 4.8 -1.1 14 14 A K H 3X S+ 0 0 125 -4,-2.5 4,-2.5 1,-0.3 5,-0.2 0.937 108.1 57.9 -45.5 -60.3 6.2 7.1 -4.1 15 15 A H H 3< S+ 0 0 106 -4,-1.4 -1,-0.3 -5,-0.3 4,-0.2 0.830 114.7 40.2 -40.2 -39.5 5.9 4.3 -6.6 16 16 A I H X< S+ 0 0 0 -4,-1.3 3,-2.8 -3,-1.0 -1,-0.2 0.931 107.1 59.9 -77.7 -49.2 3.0 3.1 -4.4 17 17 A T H >X S+ 0 0 33 -4,-3.0 3,-2.4 1,-0.3 4,-0.8 0.830 90.2 73.9 -47.9 -35.5 1.5 6.5 -3.7 18 18 A E T 3< S+ 0 0 143 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.815 91.0 57.3 -49.4 -32.5 1.1 6.9 -7.4 19 19 A M T <4 S- 0 0 99 -3,-2.8 -1,-0.3 -4,-0.2 -2,-0.2 0.050 134.1 -89.8 -88.4 26.1 -1.8 4.4 -7.1 20 20 A G T <4 S+ 0 0 65 -3,-2.4 2,-0.4 1,-0.2 -2,-0.2 1.000 73.1 154.1 64.4 73.3 -3.5 6.7 -4.6 21 21 A F < - 0 0 31 -4,-0.8 -1,-0.2 -7,-0.1 5,-0.2 -0.900 49.2-112.8-138.0 106.9 -2.0 5.5 -1.2 22 22 A S >> - 0 0 66 -2,-0.4 4,-2.6 1,-0.2 3,-0.8 -0.015 25.0-127.5 -36.6 126.6 -1.9 7.9 1.7 23 23 A K H 3> S+ 0 0 111 1,-0.3 4,-2.8 2,-0.2 5,-0.2 0.862 111.9 54.0 -47.9 -40.3 1.8 8.6 2.4 24 24 A E H 3> S+ 0 0 155 2,-0.2 4,-1.9 3,-0.2 5,-0.3 0.880 111.6 44.7 -63.4 -39.2 1.2 7.6 6.0 25 25 A A H <> S+ 0 0 34 -3,-0.8 4,-2.3 2,-0.2 -2,-0.2 0.974 118.9 39.2 -69.2 -57.2 -0.3 4.3 4.9 26 26 A S H X S+ 0 0 0 -4,-2.6 4,-2.4 2,-0.2 5,-0.2 0.882 115.5 56.0 -60.9 -39.6 2.3 3.4 2.3 27 27 A R H X S+ 0 0 95 -4,-2.8 4,-2.0 -5,-0.4 5,-0.2 0.986 112.6 37.2 -56.2 -66.8 5.0 4.7 4.6 28 28 A Q H X S+ 0 0 106 -4,-1.9 4,-2.7 -5,-0.2 5,-0.2 0.949 115.0 56.0 -51.1 -57.0 4.2 2.6 7.7 29 29 A A H >X S+ 0 0 6 -4,-2.3 4,-3.0 -5,-0.3 3,-0.6 0.916 106.8 48.7 -40.4 -62.9 3.4 -0.5 5.6 30 30 A L H 3<>S+ 0 0 0 -4,-2.4 5,-1.9 1,-0.3 6,-0.9 0.901 112.9 48.3 -46.0 -49.2 6.7 -0.5 3.8 31 31 A M H ><5S+ 0 0 57 -4,-2.0 3,-0.9 3,-0.2 -1,-0.3 0.845 112.5 49.7 -61.9 -34.5 8.5 -0.2 7.2 32 32 A D H <<5S+ 0 0 118 -4,-2.7 -2,-0.2 -3,-0.6 -1,-0.2 0.892 113.1 44.7 -71.6 -41.2 6.3 -3.0 8.5 33 33 A N T 3<5S- 0 0 43 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 -0.001 126.8 -98.5 -92.3 28.8 7.0 -5.3 5.6 34 34 A G T < 5S- 0 0 45 -3,-0.9 -3,-0.2 1,-0.2 3,-0.2 0.975 78.6 -49.7 53.3 65.9 10.7 -4.4 5.7 35 35 A N S - 0 0 81 -6,-0.9 4,-2.6 -7,-0.2 -1,-0.2 -0.738 24.5-163.5 -87.7 105.1 8.9 -4.3 0.8 37 37 A L H > S+ 0 0 73 -2,-0.9 4,-1.0 2,-0.2 -1,-0.2 0.925 91.8 31.3 -50.8 -50.7 7.9 -2.6 -2.4 38 38 A E H >> S+ 0 0 156 2,-0.2 4,-1.4 1,-0.2 3,-0.8 0.993 116.9 52.5 -71.9 -67.9 5.4 -5.4 -3.2 39 39 A A H 3> S+ 0 0 20 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.816 101.5 68.6 -36.7 -40.0 4.3 -6.5 0.3 40 40 A A H 3X S+ 0 0 0 -4,-2.6 4,-2.4 1,-0.2 3,-0.4 0.950 102.2 40.3 -45.8 -66.3 3.6 -2.8 0.9 41 41 A L H