==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 29-MAY-04 1WJT . COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8318.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 65.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 46.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-157.5 -17.8 -10.9 -10.7 2 2 A S - 0 0 118 1,-0.1 2,-0.1 0, 0.0 0, 0.0 -0.253 360.0 -93.4 -64.4 153.6 -20.7 -11.7 -8.4 3 3 A S S S+ 0 0 131 2,-0.1 -1,-0.1 0, 0.0 2,-0.1 -0.354 87.3 48.1 -68.8 148.7 -22.0 -8.9 -6.1 4 4 A G S S- 0 0 70 -3,-0.1 2,-0.5 1,-0.1 0, 0.0 0.015 76.2-108.3 100.2 152.5 -20.7 -8.8 -2.6 5 5 A S + 0 0 131 -2,-0.1 2,-0.2 2,-0.0 -1,-0.1 -0.939 61.0 118.6-123.0 108.0 -17.2 -8.8 -1.2 6 6 A S + 0 0 120 -2,-0.5 2,-0.3 2,-0.2 3,-0.0 -0.608 57.7 25.0-171.3 103.1 -16.2 -12.0 0.7 7 7 A G S S- 0 0 79 -2,-0.2 2,-0.2 0, 0.0 -2,-0.0 -0.998 96.4 -7.9 146.5-140.9 -13.3 -14.3 -0.2 8 8 A M S S+ 0 0 196 -2,-0.3 2,-0.2 1,-0.1 -2,-0.2 -0.484 78.5 89.5 -91.0 163.0 -10.1 -14.0 -2.1 9 9 A G + 0 0 41 -2,-0.2 2,-3.5 3,-0.0 -1,-0.1 -0.695 17.0 149.1 157.6 -97.2 -8.9 -11.0 -4.2 10 10 A L S > S+ 0 0 43 1,-0.3 4,-3.6 -2,-0.2 5,-0.3 -0.355 72.2 75.9 66.8 -70.0 -6.9 -8.2 -2.6 11 11 A E H > S+ 0 0 73 -2,-3.5 4,-1.9 1,-0.2 -1,-0.3 0.797 98.6 48.8 -37.6 -36.6 -5.2 -7.6 -5.9 12 12 A E H > S+ 0 0 116 2,-0.2 4,-3.3 1,-0.2 -1,-0.2 0.981 111.5 44.1 -69.8 -60.1 -8.4 -5.9 -6.9 13 13 A E H > S+ 0 0 63 1,-0.2 4,-2.2 2,-0.2 -2,-0.2 0.856 112.5 56.2 -52.6 -38.3 -8.8 -3.7 -3.8 14 14 A L H X S+ 0 0 0 -4,-3.6 4,-2.6 2,-0.2 -1,-0.2 0.945 110.9 42.1 -59.2 -51.1 -5.2 -2.9 -4.1 15 15 A L H X S+ 0 0 62 -4,-1.9 4,-2.7 -5,-0.3 5,-0.3 0.949 111.2 55.4 -60.6 -51.6 -5.7 -1.6 -7.7 16 16 A R H X S+ 0 0 169 -4,-3.3 4,-1.6 1,-0.2 -1,-0.2 0.856 110.7 47.9 -48.9 -39.8 -8.9 0.1 -6.8 17 17 A I H >X S+ 0 0 13 -4,-2.2 4,-2.7 -5,-0.2 3,-0.5 0.988 109.2 50.2 -65.4 -62.0 -6.9 1.9 -4.1 18 18 A A H 3X S+ 0 0 5 -4,-2.6 4,-3.6 1,-0.3 5,-0.5 0.912 108.4 53.3 -39.8 -61.8 -4.0 2.9 -6.3 19 19 A K H 3X S+ 0 0 161 -4,-2.7 4,-2.8 1,-0.3 -1,-0.3 0.883 110.4 48.7 -41.2 -49.5 -6.4 4.3 -8.9 20 20 A K H S+ 0 0 11 -4,-2.8 5,-1.0 1,-0.2 4,-0.3 0.913 111.2 49.5 -49.2 -51.0 -5.8 12.2 -6.1 25 25 A V H ><5S+ 0 0 18 -4,-2.9 3,-1.3 1,-0.2 -1,-0.2 0.925 111.2 49.7 -55.0 -48.4 -2.2 12.9 -6.9 26 26 A S H 3<5S+ 0 0 109 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.906 116.3 41.3 -57.1 -44.7 -3.2 13.8 -10.5 27 27 A R T 3<5S- 0 0 197 -4,-3.1 -1,-0.3 -5,-0.1 -2,-0.2 0.389 109.1-133.3 -83.6 2.7 -5.9 16.1 -9.1 28 28 A K T < 5S+ 0 0 160 -3,-1.3 -3,-0.2 -4,-0.3 -2,-0.1 0.929 74.2 105.8 40.4 73.5 -3.4 17.2 -6.5 29 29 A K < - 0 0 143 -5,-1.0 -4,-0.1 -6,-0.0 -1,-0.1 0.458 42.7-179.8-138.4 -60.7 -5.8 16.8 -3.5 30 30 A T + 0 0 23 -9,-0.2 3,-0.1 2,-0.1 4,-0.1 0.944 21.9 149.3 44.2 83.0 -5.0 13.8 -1.4 31 31 A E S S+ 0 0 164 1,-0.1 3,-0.3 2,-0.0 2,-0.2 0.788 72.0 29.6-106.9 -50.0 -7.7 14.1 1.2 32 32 A G S > S+ 0 0 17 1,-0.2 4,-1.0 2,-0.1 -2,-0.1 -0.426 78.6 123.5-110.6 54.8 -8.5 10.5 2.1 33 33 A A H > + 0 0 1 -2,-0.2 4,-4.4 2,-0.2 5,-0.2 0.887 67.8 60.9 -78.7 -42.7 -5.1 9.0 1.5 34 34 A L H > S+ 0 0 34 -3,-0.3 4,-4.9 1,-0.3 5,-0.2 0.941 102.9 50.7 -47.4 -58.4 -4.8 7.6 5.0 35 35 A D H > S+ 0 0 112 1,-0.2 4,-2.2 2,-0.2 -1,-0.3 0.895 116.0 43.3 -46.5 -47.3 -7.8 5.5 4.6 36 36 A L H X S+ 0 0 14 -4,-1.0 4,-2.6 2,-0.2 -2,-0.2 0.967 115.9 46.4 -63.6 -55.1 -6.3 4.2 1.3 37 37 A L H X S+ 0 0 0 -4,-4.4 4,-3.2 2,-0.2 5,-0.3 0.930 109.5 56.6 -52.0 -51.2 -2.8 3.8 2.8 38 38 A K H X S+ 0 0 108 -4,-4.9 4,-2.2 -5,-0.2 -1,-0.2 0.942 107.7 46.2 -44.1 -65.5 -4.4 2.1 5.8 39 39 A K H >< S+ 0 0 118 -4,-2.2 3,-0.6 1,-0.3 -1,-0.2 0.917 111.2 53.3 -43.2 -56.3 -6.0 -0.6 3.7 40 40 A L H >< S+ 0 0 1 -4,-2.6 3,-2.4 1,-0.3 -1,-0.3 0.920 107.1 50.9 -44.9 -54.9 -2.8 -1.0 1.8 41 41 A N H 3< S+ 0 0 72 -4,-3.2 -1,-0.3 1,-0.3 -2,-0.2 0.859 113.9 45.8 -52.0 -38.2 -1.0 -1.6 5.1 42 42 A S T << S+ 0 0 103 -4,-2.2 2,-0.4 -3,-0.6 -1,-0.3 -0.144 99.0 92.1 -97.6 36.1 -3.7 -4.1 5.8 43 43 A C S < S- 0 0 7 -3,-2.4 2,-0.6 -5,-0.1 -1,-0.0 -0.961 84.4-119.2-135.4 114.7 -3.4 -5.6 2.4 44 44 A Q - 0 0 155 -2,-0.4 2,-0.2 1,-0.0 -2,-0.1 -0.338 40.1-161.6 -54.7 101.1 -1.1 -8.5 1.7 45 45 A M - 0 0 5 -2,-0.6 2,-0.3 -4,-0.1 3,-0.1 -0.530 9.9-172.7 -88.2 155.9 1.2 -6.9 -0.9 46 46 A S > - 0 0 40 -2,-0.2 4,-3.2 1,-0.1 5,-0.1 -0.946 35.8-114.6-144.4 162.5 3.5 -8.8 -3.3 47 47 A I H > S+ 0 0 77 -2,-0.3 4,-1.1 38,-0.3 5,-0.2 0.969 118.3 46.8 -60.9 -56.5 6.2 -8.2 -5.8 48 48 A Q H >> S+ 0 0 140 1,-0.3 4,-1.8 2,-0.2 3,-0.5 0.885 118.4 43.1 -52.2 -43.2 4.1 -9.4 -8.7 49 49 A L H 3>>S+ 0 0 24 1,-0.2 4,-3.4 2,-0.2 5,-0.9 0.860 102.1 67.3 -71.1 -37.1 1.2 -7.3 -7.4 50 50 A L H 3<5S+ 0 0 17 -4,-3.2 6,-0.5 1,-0.2 -1,-0.2 0.765 108.5 41.2 -53.6 -25.4 3.6 -4.4 -6.7 51 51 A Q H <<5S+ 0 0 128 -4,-1.1 -1,-0.2 -3,-0.5 -2,-0.2 0.864 119.9 41.3 -88.8 -44.1 3.9 -4.3 -10.5 52 52 A T H <5S+ 0 0 63 -4,-1.8 -2,-0.2 1,-0.2 -3,-0.2 0.973 125.0 35.2 -67.5 -57.2 0.2 -4.9 -11.3 53 53 A T T <5S- 0 0 4 -4,-3.4 -3,-0.2 1,-0.1 -1,-0.2 0.743 86.6-163.4 -68.5 -23.9 -1.2 -2.7 -8.6 54 54 A R >>< + 0 0 168 -5,-0.9 4,-1.0 1,-0.2 3,-0.8 0.778 39.4 143.1 42.5 30.7 1.8 -0.4 -9.1 55 55 A I H 3> + 0 0 0 -6,-0.3 4,-3.2 1,-0.2 5,-0.3 0.769 52.7 78.1 -68.1 -26.1 0.7 1.0 -5.8 56 56 A G H 3> S+ 0 0 25 -6,-0.5 4,-1.5 1,-0.3 -1,-0.2 0.873 101.2 37.7 -49.0 -43.3 4.4 1.4 -5.0 57 57 A V H <> S+ 0 0 65 -3,-0.8 4,-2.5 2,-0.2 -1,-0.3 0.776 112.9 60.3 -79.2 -28.7 4.4 4.5 -7.2 58 58 A A H X S+ 0 0 0 -4,-1.0 4,-1.3 2,-0.2 -2,-0.2 0.973 107.4 42.9 -61.6 -57.4 1.0 5.5 -5.9 59 59 A V H >X S+ 0 0 0 -4,-3.2 4,-2.6 1,-0.2 3,-2.2 0.970 115.3 48.2 -51.8 -63.7 2.1 5.7 -2.3 60 60 A N H 3X S+ 0 0 69 -4,-1.5 4,-2.0 1,-0.3 5,-0.3 0.884 104.6 62.2 -43.5 -47.5 5.3 7.5 -3.1 61 61 A G H 3X S+ 0 0 10 -4,-2.5 4,-1.9 1,-0.2 -1,-0.3 0.837 111.9 37.7 -48.2 -37.7 3.2 9.8 -5.3 62 62 A V H S+ 0 0 177 3,-0.1 4,-2.8 4,-0.0 5,-0.1 0.656 97.7 34.9-121.7 -49.8 3.0 12.9 9.1 70 70 A E H > S+ 0 0 113 2,-0.2 4,-2.2 3,-0.2 5,-0.3 0.919 124.6 42.7 -74.5 -46.8 0.3 10.2 9.4 71 71 A V H > S+ 0 0 19 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.788 123.6 40.7 -69.0 -28.3 -0.5 10.2 5.7 72 72 A V H > S+ 0 0 18 2,-0.2 4,-2.1 3,-0.1 -2,-0.2 0.840 114.2 53.0 -86.0 -39.2 3.2 10.4 5.0 73 73 A S H >X S+ 0 0 51 -4,-2.8 4,-2.4 2,-0.2 3,-1.1 0.991 109.7 44.7 -58.2 -67.6 4.2 8.0 7.7 74 74 A L H 3X S+ 0 0 25 -4,-2.2 4,-2.5 1,-0.3 -1,-0.2 0.842 112.6 56.1 -45.3 -38.2 1.9 5.1 6.7 75 75 A A H 3X S+ 0 0 0 -4,-0.5 4,-1.5 -5,-0.3 -1,-0.3 0.901 106.8 48.5 -61.8 -42.6 3.1 5.9 3.2 76 76 A K H XX S+ 0 0 101 -4,-2.1 4,-3.5 -3,-1.1 3,-0.6 0.949 110.0 50.6 -62.1 -51.2 6.7 5.4 4.3 77 77 A V H 3X S+ 0 0 51 -4,-2.4 4,-3.5 1,-0.3 5,-0.4 0.894 107.4 54.9 -53.0 -43.4 5.9 2.1 6.0 78 78 A L H 3X S+ 0 0 1 -4,-2.5 4,-1.8 -5,-0.3 -1,-0.3 0.856 112.4 44.0 -58.5 -36.3 4.2 1.0 2.8 79 79 A I H X S+ 0 0 53 -4,-3.5 4,-1.7 1,-0.3 3,-1.4 0.916 117.1 45.6 -46.6 -52.0 7.5 -2.9 4.1 82 82 A W H 3X>S+ 0 0 11 -4,-1.8 4,-3.9 -5,-0.4 5,-0.9 0.814 100.6 70.7 -61.8 -30.0 7.2 -3.1 0.3 83 83 A K H 3<5S+ 0 0 113 -4,-2.1 4,-0.3 -3,-0.3 -1,-0.3 0.830 105.6 38.7 -55.0 -33.3 10.9 -2.5 0.4 84 84 A R H <<5S+ 0 0 174 -3,-1.4 -1,-0.2 -4,-1.2 -2,-0.2 0.816 115.9 51.9 -85.5 -35.4 11.2 -6.0 1.8 85 85 A L H <5S+ 0 0 63 -4,-1.7 -38,-0.3 -5,-0.2 -2,-0.2 0.966 131.4 15.7 -64.6 -54.8 8.4 -7.4 -0.4 86 86 A L T <5S+ 0 0 85 -4,-3.9 -3,-0.2 -40,-0.1 -2,-0.2 0.926 77.3 171.0 -83.8 -53.1 9.9 -6.1 -3.6 87 87 A D < - 0 0 87 -5,-0.9 3,-0.2 -4,-0.3 -4,-0.1 0.896 37.5-135.9 38.0 59.4 13.4 -5.4 -2.4 88 88 A S - 0 0 56 1,-0.2 2,-0.8 0, 0.0 -1,-0.0 0.097 27.4 -85.6 -38.5 155.8 14.6 -4.7 -5.9 89 89 A P S S+ 0 0 132 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.613 75.3 135.8 -75.0 106.8 17.9 -6.3 -6.9 90 90 A R - 0 0 208 -2,-0.8 2,-0.3 -3,-0.2 0, 0.0 -0.976 54.0-104.0-149.8 158.7 20.5 -3.8 -5.8 91 91 A T + 0 0 103 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.651 45.1 158.1 -87.8 141.4 23.9 -3.6 -4.0 92 92 A T - 0 0 110 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.977 24.4-147.2-156.7 162.1 24.1 -2.4 -0.4 93 93 A K + 0 0 185 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.931 32.7 123.1-134.4 157.1 26.3 -2.6 2.6 94 94 A G + 0 0 80 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.263 18.0 168.4 150.0 121.3 25.7 -2.6 6.4 95 95 A E - 0 0 140 -2,-0.1 2,-0.4 3,-0.0 3,-0.1 -0.993 17.3-161.9-151.6 146.1 26.6 -5.0 9.2 96 96 A R S S- 0 0 224 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.822 71.9 -40.9-134.3 93.5 26.5 -4.9 13.0 97 97 A E - 0 0 140 -2,-0.4 2,-1.0 1,-0.2 -1,-0.2 0.908 60.6-146.6 51.9 102.1 28.6 -7.5 14.7 98 98 A S + 0 0 96 -3,-0.1 -1,-0.2 2,-0.0 -3,-0.0 -0.789 58.4 101.7-102.2 90.5 28.3 -10.7 12.8 99 99 A G - 0 0 28 -2,-1.0 2,-0.2 3,-0.0 3,-0.1 -0.524 53.7-151.0-173.2 97.4 28.5 -13.5 15.5 100 100 A P S S+ 0 0 124 0, 0.0 -2,-0.0 0, 0.0 -3,-0.0 -0.490 77.0 10.9 -75.0 141.3 25.6 -15.4 16.9 101 101 A S S S+ 0 0 130 -2,-0.2 2,-0.4 1,-0.2 0, 0.0 0.961 70.7 175.9 54.5 90.3 25.9 -16.7 20.5 102 102 A S 0 0 107 1,-0.2 -1,-0.2 -3,-0.1 -3,-0.0 -0.729 360.0 360.0-128.1 81.1 29.1 -15.0 21.8 103 103 A G 0 0 133 -2,-0.4 -1,-0.2 0, 0.0 -2,-0.0 0.073 360.0 360.0 160.9 360.0 29.5 -16.0 25.4