==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TOXIN 23-SEP-04 1WQ8 . COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR TOXIN; . SOURCE 2 ORGANISM_SCIENTIFIC: VIPERA ASPIS ASPIS; . AUTHOR K.SUTO,Y.YAMAZAKI,T.MORITA,H.MIZUNO . 100 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7655.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 61.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 32 32.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 205 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 134.1 29.5 1.9 -6.3 2 2 A V - 0 0 138 1,-0.0 3,-0.0 0, 0.0 0, 0.0 -0.751 360.0-122.4 -85.3 125.5 30.6 4.5 -8.8 3 3 A R - 0 0 171 -2,-0.5 5,-0.0 1,-0.1 -1,-0.0 -0.545 34.9-112.3 -69.5 126.5 27.9 7.2 -9.2 4 4 A P >> - 0 0 74 0, 0.0 4,-2.2 0, 0.0 3,-0.5 -0.263 18.9-118.6 -62.5 145.1 26.9 7.4 -12.9 5 5 A F H 3> S+ 0 0 143 1,-0.2 4,-3.2 2,-0.2 5,-0.3 0.871 111.8 55.2 -50.0 -47.4 27.8 10.5 -14.9 6 6 A L H 3> S+ 0 0 137 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.888 110.5 45.4 -57.6 -40.3 24.2 11.4 -15.7 7 7 A E H <> S+ 0 0 95 -3,-0.5 4,-1.8 2,-0.2 -1,-0.2 0.898 113.8 49.7 -68.9 -41.8 23.3 11.4 -12.0 8 8 A V H X S+ 0 0 66 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.956 113.4 45.4 -60.9 -51.4 26.4 13.4 -11.1 9 9 A H H X S+ 0 0 84 -4,-3.2 4,-1.1 1,-0.2 -2,-0.2 0.893 109.4 56.6 -61.0 -41.5 25.7 16.0 -13.7 10 10 A E H < S+ 0 0 129 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.2 0.876 109.0 44.5 -61.2 -40.4 22.0 16.2 -12.8 11 11 A R H < S+ 0 0 122 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.826 112.8 49.3 -77.7 -30.5 22.7 17.1 -9.1 12 12 A S H < S+ 0 0 43 -4,-1.7 36,-2.0 -5,-0.2 -1,-0.2 0.656 89.5 111.2 -83.6 -10.0 25.4 19.7 -9.8 13 13 A A S < S- 0 0 34 -4,-1.1 33,-0.2 34,-0.2 2,-0.1 -0.203 86.6 -83.3 -63.9 151.5 23.3 21.5 -12.4 14 14 A a S S+ 0 0 28 34,-0.1 2,-0.3 33,-0.1 33,-0.2 -0.347 78.6 121.7 -55.3 120.2 21.9 25.0 -11.8 15 15 A Q E -A 46 0A 48 31,-1.6 31,-2.3 -2,-0.1 2,-0.4 -0.965 67.4 -73.8-170.5 170.2 18.7 24.5 -9.8 16 16 A A E +A 45 0A 33 -2,-0.3 2,-0.3 29,-0.2 29,-0.2 -0.632 58.0 159.8 -80.8 131.7 17.0 25.5 -6.5 17 17 A R E -A 44 0A 58 27,-2.3 27,-2.5 -2,-0.4 25,-0.1 -0.969 49.5 -69.6-147.9 162.6 18.4 23.6 -3.5 18 18 A E E +A 43 0A 154 -2,-0.3 2,-0.4 25,-0.2 25,-0.2 -0.334 58.1 178.5 -58.3 126.6 18.6 24.0 0.2 19 19 A T E -A 42 0A 43 23,-2.8 23,-2.2 -2,-0.1 2,-0.4 -0.987 30.0-121.6-136.5 140.2 20.8 26.9 1.1 20 20 A L E -A 41 0A 121 -2,-0.4 21,-0.2 21,-0.2 23,-0.0 -0.699 27.8-172.5 -85.1 128.3 21.9 28.6 4.3 21 21 A V E -A 40 0A 0 19,-3.2 19,-2.2 -2,-0.4 5,-0.0 -0.945 18.1-138.3-124.3 105.9 21.0 32.3 4.5 22 22 A P E >> -A 39 0A 50 0, 0.0 4,-1.9 0, 0.0 3,-0.8 -0.360 17.9-128.5 -58.4 141.8 22.3 34.3 7.5 23 23 A I H 3> S+ 0 0 1 15,-2.6 4,-2.9 1,-0.3 7,-0.2 0.897 111.6 56.6 -60.0 -37.0 19.7 36.7 8.8 24 24 A L H 34 S+ 0 0 94 14,-0.5 -1,-0.3 1,-0.2 6,-0.1 0.754 104.9 52.3 -66.2 -25.0 22.3 39.5 8.5 25 25 A Q H <4 S+ 0 0 117 -3,-0.8 -1,-0.2 1,-0.1 -2,-0.2 0.897 113.5 41.5 -76.5 -43.1 22.7 38.6 4.8 26 26 A E H < S+ 0 0 40 -4,-1.9 -2,-0.2 1,-0.3 -3,-0.1 0.880 130.9 29.4 -70.6 -36.9 18.9 38.9 4.1 27 27 A Y >< + 0 0 80 -4,-2.9 3,-2.1 -5,-0.2 -1,-0.3 -0.738 65.4 179.7-128.2 83.1 18.7 42.0 6.3 28 28 A P T 3 S+ 0 0 87 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.695 81.6 62.6 -56.1 -20.7 22.0 44.0 6.4 29 29 A D T 3 S+ 0 0 150 1,-0.2 2,-2.3 2,-0.1 3,-0.3 0.643 76.0 89.9 -81.5 -15.4 20.3 46.5 8.7 30 30 A E < + 0 0 54 -3,-2.1 -1,-0.2 1,-0.2 -3,-0.1 -0.350 49.9 137.0 -79.4 61.3 19.8 44.0 11.5 31 31 A I + 0 0 133 -2,-2.3 -1,-0.2 1,-0.1 -2,-0.1 0.572 59.0 48.3 -86.5 -10.6 23.2 44.8 13.0 32 32 A S S S+ 0 0 85 -3,-0.3 -1,-0.1 2,-0.0 -2,-0.1 0.852 91.6 70.0-101.8 -41.2 22.5 44.9 16.7 33 33 A D S S- 0 0 51 39,-0.1 2,-0.4 1,-0.1 39,-0.2 -0.244 70.7-119.4 -84.7 168.8 20.4 42.0 17.9 34 34 A I E -B 71 0B 45 37,-2.3 37,-3.6 -2,-0.0 2,-0.4 -0.857 28.8-159.5-101.7 137.9 21.1 38.3 18.4 35 35 A F E -B 70 0B 17 -2,-0.4 35,-0.2 35,-0.2 -12,-0.1 -0.956 12.6-126.1-123.0 142.7 19.1 35.8 16.4 36 36 A R E S+B 69 0B 139 33,-2.4 33,-2.5 -2,-0.4 2,-0.2 -0.994 104.5 22.2-128.6 119.7 18.4 32.1 17.0 37 37 A P S S- 0 0 75 0, 0.0 -1,-0.2 0, 0.0 32,-0.1 0.756 85.5-152.9 -72.2 167.4 19.0 30.5 14.6 38 38 A S S S+ 0 0 86 -2,-0.2 -15,-2.6 -16,-0.1 -14,-0.5 0.631 80.3 26.6 -81.7 -13.1 21.5 33.0 13.1 39 39 A b E S-A 22 0A 37 -17,-0.3 2,-0.3 -16,-0.1 -19,-0.1 -0.937 72.4-144.1-141.4 162.7 20.7 31.7 9.6 40 40 A V E -A 21 0A 9 -19,-2.2 -19,-3.2 -2,-0.3 2,-0.6 -0.879 15.2-126.0-127.3 160.0 17.9 29.9 7.9 41 41 A A E +A 20 0A 47 -2,-0.3 2,-0.3 -21,-0.2 -21,-0.2 -0.941 43.8 146.8-110.8 115.8 17.7 27.2 5.3 42 42 A V E -A 19 0A 7 -23,-2.2 -23,-2.8 -2,-0.6 2,-0.4 -0.873 53.8 -78.9-138.3 170.4 15.6 28.0 2.2 43 43 A L E +A 18 0A 71 -2,-0.3 45,-2.5 -25,-0.2 2,-0.3 -0.593 53.2 166.1 -79.4 128.8 15.7 27.2 -1.5 44 44 A R E -A 17 0A 33 -27,-2.5 -27,-2.3 -2,-0.4 2,-0.3 -0.982 40.3 -97.4-139.8 152.0 18.2 29.2 -3.5 45 45 A c E +A 16 0A 17 -2,-0.3 2,-0.3 -29,-0.2 -29,-0.2 -0.524 54.9 145.9 -73.1 127.4 19.7 28.8 -7.0 46 46 A S E +A 15 0A 41 -31,-2.3 -31,-1.6 -2,-0.3 2,-0.2 -0.982 6.8 108.6-159.3 150.1 23.1 27.1 -7.2 47 47 A G - 0 0 31 -2,-0.3 2,-0.8 -33,-0.2 9,-0.4 -0.804 64.2 -82.8 158.1 165.2 25.0 24.9 -9.5 48 48 A b - 0 0 87 -36,-2.0 -34,-0.1 -2,-0.2 4,-0.1 -0.831 46.0-136.3 -99.1 106.0 27.9 24.8 -11.9 49 49 A d - 0 0 13 -2,-0.8 5,-0.1 5,-0.4 7,-0.0 -0.251 14.3-124.3 -60.1 141.9 26.8 26.1 -15.3 50 50 A T S S+ 0 0 125 1,-0.1 2,-0.9 2,-0.1 -1,-0.1 0.893 109.9 59.5 -53.9 -40.5 28.0 24.2 -18.4 51 51 A D S > S- 0 0 85 1,-0.1 3,-2.1 2,-0.0 -2,-0.2 -0.832 86.4-151.2 -89.5 108.7 29.3 27.5 -19.7 52 52 A E T 3 S+ 0 0 187 -2,-0.9 -1,-0.1 1,-0.3 -3,-0.1 0.595 89.9 62.4 -58.3 -14.3 31.7 28.3 -16.8 53 53 A S T 3 S+ 0 0 87 2,-0.1 43,-0.5 42,-0.0 -1,-0.3 0.647 89.5 87.0 -86.5 -15.1 31.3 32.1 -17.4 54 54 A L < - 0 0 48 -3,-2.1 -5,-0.4 41,-0.1 2,-0.4 -0.548 69.8-137.3 -88.7 152.4 27.6 32.0 -16.6 55 55 A K E - C 0 94B 106 39,-3.0 39,-3.0 -2,-0.2 2,-0.7 -0.870 19.9-118.1-109.3 138.9 26.1 32.3 -13.1 56 56 A a E + C 0 93B 9 -9,-0.4 37,-0.2 -2,-0.4 -9,-0.1 -0.646 50.4 173.1 -75.3 114.2 23.2 30.2 -11.8 57 57 A T E - C 0 92B 33 35,-3.2 35,-2.8 -2,-0.7 2,-0.1 -0.929 34.4-104.1-131.3 150.2 20.6 32.9 -11.1 58 58 A P E + C 0 91B 41 0, 0.0 33,-0.3 0, 0.0 3,-0.1 -0.455 30.0 170.2 -73.0 139.8 16.9 33.0 -10.1 59 59 A V E S+ 0 0 61 31,-2.5 2,-0.3 1,-0.3 32,-0.2 0.220 75.9 39.9-124.5 1.8 14.3 33.8 -12.8 60 60 A G E + C 0 90B 17 30,-1.4 29,-2.1 2,-0.0 30,-1.3 -0.984 69.2 158.3-151.0 139.5 11.5 32.9 -10.4 61 61 A K E - C 0 88B 128 -2,-0.3 2,-0.3 27,-0.3 27,-0.2 -0.994 14.6-178.7-159.4 163.2 10.9 33.6 -6.7 62 62 A H E - C 0 87B 80 25,-2.5 25,-3.0 -2,-0.3 2,-0.4 -0.879 31.1-103.9-150.0 179.1 8.5 33.9 -3.9 63 63 A T E - C 0 86B 87 -2,-0.3 2,-0.4 23,-0.2 23,-0.2 -0.902 23.1-162.9-117.6 146.1 8.6 34.8 -0.2 64 64 A V E - C 0 85B 35 21,-2.6 21,-2.4 -2,-0.4 2,-0.5 -0.956 16.2-133.7-124.4 144.8 8.3 32.4 2.8 65 65 A D E - C 0 84B 100 -2,-0.4 2,-0.4 19,-0.2 19,-0.2 -0.883 25.5-172.1-102.3 126.5 7.5 33.5 6.4 66 66 A I E - C 0 83B 40 17,-2.9 17,-3.1 -2,-0.5 2,-0.5 -0.921 25.5-122.4-121.6 141.9 9.7 31.9 9.1 67 67 A Q E + C 0 82B 139 -2,-0.4 2,-0.3 15,-0.2 15,-0.2 -0.716 39.2 176.2 -80.5 125.7 9.5 32.0 12.9 68 68 A I E - C 0 81B 1 13,-3.1 13,-2.5 -2,-0.5 2,-0.5 -0.932 28.3-127.4-129.6 150.4 12.8 33.4 14.3 69 69 A M E -BC 36 80B 60 -33,-2.5 -33,-2.4 -2,-0.3 2,-0.5 -0.884 19.2-158.7-100.7 125.3 13.8 34.2 17.8 70 70 A R E -BC 35 79B 50 9,-3.0 9,-1.6 -2,-0.5 2,-0.5 -0.905 8.3-161.0-102.7 127.6 15.1 37.7 18.4 71 71 A V E -BC 34 78B 6 -37,-3.6 -37,-2.3 -2,-0.5 7,-0.2 -0.946 18.8-127.6-116.1 126.7 17.3 38.1 21.4 72 72 A N > - 0 0 41 5,-2.5 4,-2.8 -2,-0.5 5,-0.2 -0.549 17.9-147.3 -69.4 117.2 18.0 41.5 23.1 73 73 A P T 4 S+ 0 0 54 0, 0.0 -1,-0.2 0, 0.0 -40,-0.1 0.730 92.7 40.2 -63.7 -21.8 21.8 41.6 23.4 74 74 A R T 4 S+ 0 0 202 3,-0.1 -2,-0.0 1,-0.1 -41,-0.0 0.866 129.4 25.2 -94.5 -40.2 21.8 43.6 26.6 75 75 A T T 4 S- 0 0 83 2,-0.1 3,-0.1 0, 0.0 -1,-0.1 0.643 91.4-137.1 -96.4 -17.4 19.0 42.0 28.6 76 76 A Q < + 0 0 108 -4,-2.8 2,-0.2 1,-0.2 0, 0.0 0.607 48.4 155.0 68.8 13.3 19.1 38.6 26.8 77 77 A S - 0 0 76 -5,-0.2 -5,-2.5 -6,-0.1 2,-0.3 -0.526 33.4-140.9 -73.5 137.1 15.3 38.6 26.7 78 78 A S E +C 71 0B 67 -2,-0.2 2,-0.3 -7,-0.2 -7,-0.2 -0.727 22.1 174.6-101.6 150.0 13.8 36.5 23.9 79 79 A K E -C 70 0B 152 -9,-1.6 -9,-3.0 -2,-0.3 2,-0.3 -0.967 24.8-130.2-152.4 133.9 10.9 37.2 21.6 80 80 A M E +C 69 0B 89 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.2 -0.616 32.2 168.6 -85.7 145.6 9.5 35.2 18.6 81 81 A E E -C 68 0B 55 -13,-2.5 -13,-3.1 -2,-0.3 2,-0.5 -0.975 36.1-110.2-151.0 161.8 8.7 37.0 15.4 82 82 A V E -C 67 0B 89 -2,-0.3 2,-0.4 -15,-0.2 -15,-0.2 -0.834 33.6-170.0 -97.1 129.7 7.9 36.2 11.8 83 83 A M E -C 66 0B 9 -17,-3.1 -17,-2.9 -2,-0.5 2,-0.3 -0.983 15.0-134.0-124.8 133.3 10.6 37.0 9.3 84 84 A K E -C 65 0B 112 -2,-0.4 2,-0.4 -19,-0.2 -19,-0.2 -0.641 22.3-176.9 -87.6 139.6 10.3 37.0 5.5 85 85 A F E -C 64 0B 0 -21,-2.4 -21,-2.6 -2,-0.3 2,-0.3 -0.994 27.1-119.1-135.8 140.8 12.9 35.4 3.3 86 86 A T E -C 63 0B 41 -2,-0.4 2,-0.4 -23,-0.2 -23,-0.2 -0.582 29.0-166.5 -75.9 137.2 13.1 35.2 -0.5 87 87 A E E -C 62 0B 32 -25,-3.0 -25,-2.5 -2,-0.3 2,-0.4 -0.980 17.1-127.8-126.2 140.3 13.0 31.6 -1.9 88 88 A H E +C 61 0B 21 -45,-2.5 -27,-0.3 -2,-0.4 3,-0.1 -0.748 25.4 175.3 -91.9 133.3 14.0 30.8 -5.5 89 89 A T E + 0 0 85 -29,-2.1 2,-0.3 -2,-0.4 -28,-0.2 0.634 69.0 24.6-108.4 -21.4 11.5 28.7 -7.5 90 90 A A E -C 60 0B 40 -30,-1.3 -31,-2.5 -75,-0.1 -30,-1.4 -0.997 65.8-166.5-146.4 144.6 13.2 28.7 -11.0 91 91 A c E -C 58 0B 27 -2,-0.3 2,-0.3 -33,-0.3 -75,-0.1 -0.953 6.3-179.0-135.6 152.3 16.8 29.1 -12.1 92 92 A E E -C 57 0B 91 -35,-2.8 -35,-3.2 -2,-0.3 2,-0.8 -0.982 36.6-109.1-145.6 153.0 18.8 29.8 -15.2 93 93 A d E +C 56 0B 45 -2,-0.3 -37,-0.2 -37,-0.2 -39,-0.1 -0.779 50.9 178.6 -83.4 113.5 22.5 30.1 -16.2 94 94 A R E -C 55 0B 103 -39,-3.0 -39,-3.0 -2,-0.8 2,-0.2 -0.868 30.3-105.0-122.3 152.3 22.8 33.8 -17.0 95 95 A P - 0 0 99 0, 0.0 2,-1.0 0, 0.0 -41,-0.1 -0.475 23.7-134.9 -75.2 142.7 25.6 36.1 -18.0 96 96 A R - 0 0 180 -43,-0.5 3,-0.0 -2,-0.2 0, 0.0 -0.847 27.3-139.7 -97.5 98.4 27.1 38.5 -15.4 97 97 A R - 0 0 168 -2,-1.0 2,-0.8 1,-0.1 0, 0.0 -0.277 19.2-110.4 -60.0 140.3 27.3 41.8 -17.4 98 98 A K - 0 0 177 1,-0.0 -1,-0.1 2,-0.0 2,-0.1 -0.644 36.7-144.6 -76.2 110.9 30.5 43.8 -16.8 99 99 A Q 0 0 146 -2,-0.8 -1,-0.0 -3,-0.0 -3,-0.0 -0.357 360.0 360.0 -72.7 154.3 29.3 46.9 -14.9 100 100 A G 0 0 115 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.317 360.0 360.0 76.7 360.0 31.0 50.3 -15.5