==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTO . COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5193.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 70.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 35.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A V 0 0 81 0, 0.0 15,-2.9 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 137.0 -2.4 28.9 65.0 2 3 A K E -A 15 0A 133 13,-0.2 2,-0.6 14,-0.1 13,-0.2 -0.743 360.0-154.5 -92.1 132.9 0.5 26.7 65.8 3 4 A V E -A 14 0A 0 11,-3.1 11,-2.4 -2,-0.4 2,-0.5 -0.951 8.5-157.9-108.0 122.0 1.9 24.4 63.1 4 5 A K E +A 13 0A 132 -2,-0.6 2,-0.3 9,-0.2 9,-0.2 -0.858 25.8 150.9-100.0 129.6 3.6 21.3 64.4 5 6 A F E -A 12 0A 7 7,-2.6 7,-3.0 -2,-0.5 2,-0.4 -0.933 43.3-108.2-150.4 168.9 6.1 19.6 62.1 6 7 A K E -A 11 0A 143 37,-0.5 2,-0.5 -2,-0.3 37,-0.4 -0.913 23.5-168.5-106.6 135.2 9.2 17.5 62.1 7 8 A Y E > S-A 10 0A 93 3,-2.7 3,-1.7 -2,-0.4 35,-0.1 -0.979 81.1 -19.1-122.8 112.6 12.5 19.0 60.9 8 9 A K T 3 S- 0 0 176 -2,-0.5 -1,-0.1 1,-0.3 3,-0.1 0.877 130.2 -52.7 53.4 41.1 15.3 16.5 60.4 9 10 A G T 3 S+ 0 0 56 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.473 117.1 112.5 77.9 2.7 13.2 14.1 62.5 10 11 A E E < S-A 7 0A 127 -3,-1.7 -3,-2.7 1,-0.0 -1,-0.2 -0.904 73.3-106.9-110.3 136.6 12.9 16.5 65.4 11 12 A E E +A 6 0A 114 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.299 43.5 172.9 -64.5 136.1 9.6 18.1 66.5 12 13 A K E -A 5 0A 89 -7,-3.0 -7,-2.6 2,-0.0 2,-0.4 -0.937 16.5-156.7-137.9 158.9 9.3 21.8 65.7 13 14 A E E +A 4 0A 79 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.998 9.4 179.5-141.1 138.8 6.5 24.3 66.0 14 15 A V E -A 3 0A 9 -11,-2.4 -11,-3.1 -2,-0.4 2,-0.2 -0.997 26.7-124.7-138.6 137.5 5.9 27.6 64.1 15 16 A D E >> -A 2 0A 48 -2,-0.3 3,-2.5 -13,-0.2 4,-0.6 -0.579 22.6-123.8 -78.1 144.9 3.0 30.0 64.5 16 17 A T G >4 S+ 0 0 18 -15,-2.9 3,-0.7 1,-0.3 -1,-0.1 0.786 109.7 69.8 -58.9 -25.6 1.1 30.9 61.2 17 18 A S G 34 S+ 0 0 94 -16,-0.2 -1,-0.3 1,-0.2 -15,-0.1 0.673 100.2 47.0 -66.1 -14.3 1.9 34.5 61.9 18 19 A K G <4 S+ 0 0 107 -3,-2.5 16,-2.3 15,-0.0 -1,-0.2 0.552 88.3 108.9-102.0 -10.8 5.6 33.7 61.1 19 20 A I E << +B 33 0B 17 -3,-0.7 14,-0.3 -4,-0.6 3,-0.1 -0.417 38.6 174.1 -72.8 139.4 4.9 31.8 57.9 20 21 A K E + 0 0 132 12,-2.9 2,-0.3 1,-0.4 13,-0.1 0.718 59.8 18.4-104.9 -83.8 5.8 33.4 54.7 21 22 A K E - 0 0 139 2,-0.0 11,-2.0 39,-0.0 -1,-0.4 -0.657 61.1-175.9 -98.3 146.1 5.4 31.3 51.6 22 23 A V E +B 31 0B 10 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.998 12.6 154.8-140.2 132.4 3.2 28.1 51.4 23 24 A W E -B 30 0B 103 7,-2.4 7,-2.7 -2,-0.3 2,-0.4 -0.991 43.8 -97.6-154.8 162.4 2.8 25.7 48.5 24 25 A R E +B 29 0B 112 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.696 33.0 178.3 -85.8 134.7 1.9 22.2 47.6 25 26 A F E > -B 28 0B 128 3,-3.0 3,-2.2 -2,-0.4 2,-0.3 -0.791 60.9 -67.9-136.3 86.6 4.9 19.9 47.0 26 27 A G T 3 S- 0 0 66 -2,-0.3 -1,-0.2 1,-0.3 20,-0.0 -0.504 119.2 -10.2 66.2-125.9 3.7 16.4 46.2 27 28 A K T 3 S+ 0 0 124 -2,-0.3 19,-3.1 -3,-0.1 20,-0.3 0.477 126.8 82.5 -83.6 -4.5 2.1 15.0 49.4 28 29 A F E < S-BC 25 45B 69 -3,-2.2 -3,-3.0 17,-0.3 2,-0.7 -0.658 70.8-138.4-104.8 158.7 3.4 17.9 51.5 29 30 A V E -BC 24 44B 0 15,-3.0 15,-2.1 -2,-0.2 2,-0.3 -0.974 33.6-159.5-105.2 110.7 2.5 21.4 52.2 30 31 A S E +BC 23 43B 11 -7,-2.7 -7,-2.4 -2,-0.7 2,-0.3 -0.707 15.1 174.2 -87.4 147.2 5.9 23.2 52.1 31 32 A F E -BC 22 42B 1 11,-2.4 11,-2.3 -2,-0.3 2,-0.3 -0.994 24.7-147.4-151.5 154.6 6.4 26.5 53.8 32 33 A T E - C 0 41B 16 -11,-2.0 -12,-2.9 -2,-0.3 2,-0.3 -0.860 24.8-178.2-114.5 156.6 9.1 29.0 54.7 33 34 A Y E -BC 19 40B 20 7,-2.1 7,-2.7 -2,-0.3 2,-0.7 -0.974 35.6 -93.0-151.4 164.1 8.9 31.1 57.8 34 35 A D E - C 0 39B 67 -16,-2.3 2,-0.8 -2,-0.3 5,-0.2 -0.740 32.6-173.8 -86.4 114.0 10.7 33.9 59.7 35 36 A D E > S- C 0 38B 78 3,-3.4 3,-1.0 -2,-0.7 -1,-0.1 -0.763 71.9 -59.3-106.6 76.2 13.1 32.2 62.1 36 37 A N T 3 S- 0 0 163 -2,-0.8 3,-0.1 1,-0.3 -1,-0.1 0.883 117.9 -29.2 46.9 53.2 14.3 35.4 64.0 37 38 A G T 3 S+ 0 0 70 1,-0.3 2,-0.3 0, 0.0 -1,-0.3 0.406 126.6 87.7 95.7 -4.8 15.7 37.1 60.9 38 39 A K E < S-C 35 0B 138 -3,-1.0 -3,-3.4 -5,-0.0 2,-0.3 -0.912 83.4-102.5-123.9 154.2 16.6 34.0 59.0 39 40 A T E -C 34 0B 88 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.595 35.2-165.7 -76.0 128.7 14.6 31.8 56.6 40 41 A G E -C 33 0B 6 -7,-2.7 -7,-2.1 -2,-0.3 2,-0.4 -0.902 4.2-153.0-110.2 147.4 13.3 28.6 58.1 41 42 A R E +C 32 0B 165 -2,-0.4 2,-0.3 -9,-0.2 -9,-0.2 -0.962 21.1 160.7-120.9 138.9 11.9 25.8 55.9 42 43 A G E -C 31 0B 11 -11,-2.3 -11,-2.4 -2,-0.4 2,-0.3 -0.957 17.3-160.6-146.6 166.4 9.4 23.2 57.1 43 44 A A E -C 30 0B 36 -37,-0.4 -37,-0.5 -2,-0.3 2,-0.4 -0.992 2.3-169.7-149.2 147.0 6.9 20.7 55.6 44 45 A V E -C 29 0B 11 -15,-2.1 -15,-3.0 -2,-0.3 5,-0.1 -0.994 38.0-102.7-135.1 144.0 3.9 18.9 56.9 45 46 A S E >> -C 28 0B 16 -2,-0.4 3,-2.1 -17,-0.2 4,-0.6 -0.408 35.6-124.3 -62.1 137.1 2.0 16.1 55.1 46 47 A E G >4 S+ 0 0 61 -19,-3.1 3,-1.3 1,-0.3 -1,-0.1 0.869 110.0 58.5 -56.2 -37.3 -1.1 17.6 53.6 47 48 A K G 34 S+ 0 0 169 -20,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.699 110.4 45.3 -65.1 -16.1 -3.4 15.2 55.4 48 49 A D G <4 S+ 0 0 104 -3,-2.1 -1,-0.3 2,-0.1 -2,-0.2 0.411 86.6 117.1-104.2 -5.3 -1.9 16.4 58.7 49 50 A A << - 0 0 12 -3,-1.3 2,-0.1 -4,-0.6 -46,-0.1 -0.447 66.0-120.4 -69.2 137.0 -2.0 20.2 57.9 50 51 A P >> - 0 0 40 0, 0.0 4,-1.9 0, 0.0 3,-0.7 -0.381 26.2-109.1 -75.7 156.8 -4.2 22.4 60.1 51 52 A K H 3> S+ 0 0 149 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.847 115.6 58.4 -52.5 -42.3 -7.0 24.3 58.6 52 53 A E H 3> S+ 0 0 86 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.912 108.4 45.9 -60.4 -38.2 -5.4 27.7 59.0 53 54 A L H <> S+ 0 0 0 -3,-0.7 4,-2.1 1,-0.2 -1,-0.2 0.871 111.1 52.1 -72.2 -33.9 -2.4 26.5 57.0 54 55 A L H X S+ 0 0 52 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.843 108.9 51.6 -69.1 -30.6 -4.6 25.0 54.3 55 56 A D H X S+ 0 0 73 -4,-2.3 4,-2.1 -5,-0.2 -2,-0.2 0.879 109.6 49.0 -71.6 -38.5 -6.4 28.4 54.1 56 57 A M H X S+ 0 0 47 -4,-1.9 4,-2.5 -5,-0.2 -2,-0.2 0.875 108.9 54.1 -65.8 -36.6 -3.1 30.2 53.7 57 58 A L H X S+ 0 0 3 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.935 107.8 49.8 -62.5 -43.5 -2.2 27.7 51.0 58 59 A A H X S+ 0 0 33 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.935 112.2 46.9 -61.6 -44.3 -5.4 28.4 49.1 59 60 A R H X S+ 0 0 167 -4,-2.1 4,-1.7 1,-0.2 -1,-0.2 0.905 109.6 54.6 -64.6 -39.4 -4.8 32.2 49.3 60 61 A A H < S+ 0 0 40 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.918 110.3 46.4 -60.5 -43.7 -1.2 31.7 48.2 61 62 A E H >< S+ 0 0 84 -4,-2.2 3,-1.9 1,-0.2 -2,-0.2 0.950 107.5 53.4 -65.2 -52.9 -2.2 29.9 45.1 62 63 A R H 3< S+ 0 0 217 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.835 117.2 39.9 -52.0 -37.2 -5.0 32.2 44.0 63 64 A E T 3< S+ 0 0 119 -4,-1.7 2,-0.4 -5,-0.2 -1,-0.3 0.155 79.5 126.5-102.5 18.3 -2.6 35.1 44.1 64 65 A K < 0 0 174 -3,-1.9 -3,-0.0 1,-0.1 -4,-0.0 -0.631 360.0 360.0 -75.7 131.7 0.6 33.6 42.7 65 66 A K 0 0 260 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.1 -0.189 360.0 360.0 -46.9 360.0 1.8 35.8 39.8