==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTQ . COMPND 2 MOLECULE: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4869.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 64.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 34.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A V 0 0 90 0, 0.0 15,-2.2 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 127.7 22.7 1.4 19.0 2 3 A K E -A 15 0A 132 13,-0.2 2,-0.6 14,-0.1 13,-0.2 -0.896 360.0-146.0-102.6 133.5 22.3 1.5 15.2 3 4 A V E -A 14 0A 2 11,-3.0 11,-2.2 -2,-0.4 2,-0.5 -0.869 18.0-156.4 -96.6 124.8 19.5 -0.4 13.5 4 5 A K E +A 13 0A 137 -2,-0.6 2,-0.3 9,-0.2 9,-0.2 -0.870 27.7 141.3-104.6 130.7 20.8 -1.6 10.1 5 6 A F E -A 12 0A 8 7,-2.0 7,-2.5 -2,-0.5 2,-0.5 -0.990 45.5-118.7-161.2 161.2 18.4 -2.4 7.3 6 7 A K E +A 11 0A 131 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.903 30.0 179.9-108.9 135.2 17.9 -2.1 3.6 7 8 A Y E > -A 10 0A 87 3,-2.6 3,-2.1 -2,-0.5 -2,-0.0 -0.980 69.8 -9.2-139.8 126.4 15.0 -0.0 2.3 8 9 A K T 3 S- 0 0 194 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.885 131.0 -56.0 53.0 42.8 14.1 0.5 -1.3 9 10 A G T 3 S+ 0 0 64 1,-0.2 2,-0.5 -3,-0.0 -1,-0.3 0.435 114.8 120.3 72.2 2.0 17.3 -1.2 -2.1 10 11 A E E < -A 7 0A 121 -3,-2.1 -3,-2.6 0, 0.0 2,-0.3 -0.858 61.4-133.1-101.9 130.2 19.3 1.3 -0.0 11 12 A E E -A 6 0A 87 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.575 34.0-179.5 -79.2 137.1 21.4 0.1 2.9 12 13 A K E -A 5 0A 34 -7,-2.5 -7,-2.0 -2,-0.3 2,-0.4 -0.959 24.7-163.4-136.4 154.9 20.8 2.3 5.9 13 14 A E E -A 4 0A 109 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.992 16.2-173.1-134.2 133.7 21.9 2.6 9.5 14 15 A V E -A 3 0A 8 -11,-2.2 -11,-3.0 -2,-0.4 2,-0.2 -0.988 23.5-128.1-134.0 129.5 19.9 4.6 11.9 15 16 A D E > -A 2 0A 62 -2,-0.4 3,-2.2 -13,-0.2 4,-0.4 -0.517 22.8-128.8 -68.6 139.0 20.7 5.6 15.5 16 17 A T G > S+ 0 0 12 -15,-2.2 3,-1.4 1,-0.3 -1,-0.1 0.780 106.2 71.3 -62.0 -24.8 17.8 4.7 17.8 17 18 A S G 3 S+ 0 0 93 1,-0.3 -1,-0.3 -16,-0.2 -15,-0.1 0.685 100.2 47.2 -62.4 -17.5 18.0 8.3 19.1 18 19 A K G < S+ 0 0 98 -3,-2.2 16,-2.5 15,-0.0 -1,-0.3 0.493 88.6 106.5-102.1 -3.8 16.5 9.3 15.8 19 20 A I E < +B 33 0B 13 -3,-1.4 14,-0.3 -4,-0.4 3,-0.1 -0.536 40.0 169.5 -79.7 141.2 13.8 6.6 15.7 20 21 A K E + 0 0 88 12,-2.7 2,-0.3 1,-0.4 -1,-0.1 0.723 53.6 28.6-114.8 -87.2 10.3 7.9 16.3 21 22 A K E - 0 0 150 39,-0.0 11,-2.3 2,-0.0 -1,-0.4 -0.686 63.4-175.7 -84.4 138.8 7.2 5.8 15.7 22 23 A V E +B 31 0B 9 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.999 9.0 161.3-135.4 134.5 7.6 2.0 16.2 23 24 A W E -B 30 0B 106 7,-2.8 7,-2.8 -2,-0.4 2,-0.5 -0.971 34.1-111.8-149.7 166.3 5.0 -0.7 15.5 24 25 A R E +B 29 0B 98 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.862 23.1 179.0-106.0 133.1 4.6 -4.4 14.9 25 26 A V E > -B 28 0B 54 3,-2.6 3,-2.5 -2,-0.5 2,-0.2 -0.955 66.2 -58.2-130.7 108.6 3.4 -5.9 11.6 26 27 A G T 3 S- 0 0 64 -2,-0.5 0, 0.0 1,-0.3 0, 0.0 -0.347 120.0 -17.5 57.4-124.4 3.2 -9.6 11.7 27 28 A K T 3 S+ 0 0 175 -2,-0.2 19,-2.5 -3,-0.1 20,-0.5 0.074 125.0 76.9-102.2 18.7 6.7 -10.8 12.5 28 29 A F E < S-BC 25 45B 83 -3,-2.5 -3,-2.6 17,-0.3 2,-0.5 -0.881 70.8-129.7-126.8 165.1 8.5 -7.6 11.7 29 30 A V E -BC 24 44B 0 15,-3.2 15,-2.3 -2,-0.3 2,-0.3 -0.962 22.4-167.4-116.7 126.4 9.0 -4.2 13.3 30 31 A S E +BC 23 43B 21 -7,-2.8 -7,-2.8 -2,-0.5 2,-0.3 -0.835 13.8 164.8-112.8 151.1 8.3 -1.1 11.3 31 32 A F E -BC 22 42B 0 11,-2.7 11,-1.9 -2,-0.3 2,-0.3 -0.971 30.5-129.0-158.8 167.1 9.3 2.4 12.3 32 33 A T E - C 0 41B 15 -11,-2.3 -12,-2.7 -2,-0.3 2,-0.3 -0.813 27.0-176.7-115.6 165.2 9.8 6.1 11.3 33 34 A Y E -BC 19 40B 11 7,-1.8 7,-2.6 -2,-0.3 2,-0.6 -0.986 36.2 -94.0-155.9 158.0 12.9 8.1 12.0 34 35 A D E - C 0 39B 78 -16,-2.5 2,-0.4 -2,-0.3 5,-0.2 -0.676 36.5-176.0 -80.9 119.8 14.3 11.7 11.5 35 36 A D - 0 0 37 3,-3.4 3,-0.3 -2,-0.6 -1,-0.1 -0.615 59.4 -74.6-116.9 66.1 16.2 11.6 8.2 36 37 A N S S- 0 0 132 -2,-0.4 3,-0.1 1,-0.2 -2,-0.0 0.910 115.6 -9.8 43.7 74.4 17.6 15.2 8.2 37 38 A G S S+ 0 0 94 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.370 132.0 60.8 94.5 -9.4 14.7 17.4 7.3 38 39 A K S S- 0 0 137 -3,-0.3 -3,-3.4 -5,-0.0 2,-0.7 -0.967 83.2-108.5-146.4 162.5 12.3 14.5 6.4 39 40 A T E -C 34 0B 76 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.1 -0.858 35.8-161.9 -98.5 116.1 10.8 11.4 8.0 40 41 A G E -C 33 0B 9 -7,-2.6 -7,-1.8 -2,-0.7 2,-0.3 -0.415 5.1-140.9 -90.7 169.3 12.2 8.2 6.9 41 42 A R E +C 32 0B 152 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.945 23.6 161.7-128.6 149.5 10.8 4.7 7.1 42 43 A G E -C 31 0B 1 -11,-1.9 -11,-2.7 -2,-0.3 2,-0.3 -0.975 14.4-163.3-159.2 167.7 12.4 1.3 7.9 43 44 A A E -C 30 0B 34 -2,-0.3 2,-0.3 -13,-0.2 -13,-0.2 -0.975 4.8-178.9-157.9 144.8 11.7 -2.2 9.0 44 45 A V E -C 29 0B 18 -15,-2.3 -15,-3.2 -2,-0.3 5,-0.1 -0.962 40.5 -91.4-140.6 154.6 13.5 -5.2 10.4 45 46 A S E >> -C 28 0B 38 -2,-0.3 4,-1.0 -17,-0.2 3,-0.7 -0.371 34.1-123.6 -63.0 147.4 12.5 -8.7 11.3 46 47 A E T 34 S+ 0 0 83 -19,-2.5 3,-0.4 1,-0.2 -1,-0.1 0.866 113.5 56.6 -61.1 -32.3 11.5 -9.0 15.0 47 48 A K T 34 S+ 0 0 178 -20,-0.5 -1,-0.2 1,-0.2 -19,-0.1 0.785 112.0 40.1 -73.3 -22.7 14.1 -11.7 15.3 48 49 A D T <4 S+ 0 0 111 -3,-0.7 -1,-0.2 2,-0.1 -2,-0.2 0.461 90.1 114.8 -99.2 -5.7 16.9 -9.4 14.0 49 50 A A S < S- 0 0 11 -4,-1.0 5,-0.1 -3,-0.4 -46,-0.0 -0.436 70.2-115.2 -70.9 133.8 15.8 -6.2 15.9 50 51 A P >> - 0 0 37 0, 0.0 4,-2.1 0, 0.0 3,-1.0 -0.339 27.1-110.3 -65.8 153.9 18.1 -4.9 18.6 51 52 A K H 3> S+ 0 0 153 1,-0.3 4,-2.4 2,-0.2 5,-0.2 0.856 117.9 55.7 -51.6 -42.3 16.9 -5.0 22.2 52 53 A E H 3> S+ 0 0 87 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.887 107.6 48.8 -63.8 -34.2 16.6 -1.2 22.3 53 54 A L H <> S+ 0 0 0 -3,-1.0 4,-2.2 2,-0.2 -2,-0.2 0.922 110.2 51.4 -70.9 -38.8 14.3 -1.3 19.3 54 55 A L H X S+ 0 0 54 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.869 109.5 50.4 -63.9 -34.7 12.2 -4.0 20.8 55 56 A D H X S+ 0 0 57 -4,-2.4 4,-2.4 -5,-0.2 -1,-0.2 0.867 107.6 52.9 -72.7 -31.9 11.8 -2.0 24.0 56 57 A M H X S+ 0 0 30 -4,-1.8 4,-2.6 -5,-0.2 -2,-0.2 0.920 109.7 50.7 -65.8 -38.5 10.8 1.1 22.0 57 58 A L H X S+ 0 0 3 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.949 108.3 50.5 -63.5 -47.6 8.1 -1.2 20.5 58 59 A A H X S+ 0 0 49 -4,-2.5 4,-2.0 1,-0.2 -1,-0.2 0.922 112.3 48.1 -55.8 -44.1 6.9 -2.3 23.9 59 60 A R H X S+ 0 0 146 -4,-2.4 4,-1.6 1,-0.2 -1,-0.2 0.895 110.3 50.2 -66.2 -39.6 6.7 1.3 25.0 60 61 A A H < S+ 0 0 29 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.866 108.7 53.5 -66.6 -33.5 4.8 2.4 21.9 61 62 A E H >< S+ 0 0 82 -4,-2.3 3,-1.4 1,-0.2 -2,-0.2 0.899 107.4 50.6 -71.3 -37.2 2.3 -0.5 22.3 62 63 A R H 3< S+ 0 0 219 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.868 93.2 72.7 -66.0 -35.2 1.5 0.5 25.9 63 64 A E T 3< 0 0 166 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.661 360.0 360.0 -56.7 -9.6 0.9 4.1 24.8 64 65 A K < 0 0 212 -3,-1.4 -1,-0.1 -4,-0.2 0, 0.0 -0.996 360.0 360.0-125.1 360.0 -2.3 2.5 23.4