==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTR . COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4998.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 75.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 36.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 177 0, 0.0 2,-0.5 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0-164.3 29.6 8.1 6.0 2 2 A V - 0 0 48 2,-0.0 15,-3.1 49,-0.0 2,-0.3 -0.944 360.0-179.4-126.5 113.8 26.3 9.7 6.8 3 3 A K E -A 16 0A 100 -2,-0.5 2,-0.5 13,-0.3 13,-0.3 -0.825 19.2-142.6-111.1 150.5 24.7 9.4 10.1 4 4 A V E -A 15 0A 1 11,-2.9 11,-1.3 -2,-0.3 2,-0.5 -0.964 15.0-146.9-110.5 131.5 21.5 10.9 11.3 5 5 A K E +A 14 0A 134 -2,-0.5 2,-0.3 44,-0.3 9,-0.3 -0.834 32.1 153.1 -98.8 129.9 21.5 12.1 14.9 6 6 A F E -A 13 0A 4 7,-3.1 7,-1.3 -2,-0.5 2,-0.4 -0.984 38.6-122.1-153.2 167.5 18.2 11.7 16.7 7 7 A K E +A 12 0A 142 37,-0.4 2,-0.3 -2,-0.3 37,-0.3 -0.884 24.3 173.0-112.1 137.0 16.5 11.3 20.1 8 8 A Y E > S-A 11 0A 72 3,-0.7 3,-0.7 -2,-0.4 -2,-0.0 -0.891 75.4 -30.3-146.8 115.6 14.2 8.4 21.0 9 9 A K T 3 S- 0 0 185 -2,-0.3 2,-1.4 1,-0.3 3,-0.1 0.901 124.7 -50.7 42.6 52.8 12.9 8.0 24.6 10 10 A G T 3 S+ 0 0 58 1,-0.2 2,-0.5 3,-0.0 -1,-0.3 -0.447 111.8 115.7 90.2 -63.9 16.1 9.6 25.8 11 11 A E E < -A 8 0A 100 -2,-1.4 2,-1.4 -3,-0.7 -3,-0.7 -0.185 56.2-153.6 -47.4 95.8 18.6 7.5 23.9 12 12 A E E -A 7 0A 114 -2,-0.5 -5,-0.3 -5,-0.2 -1,-0.1 -0.620 25.7-177.9 -78.2 92.4 20.2 10.1 21.6 13 13 A K E -A 6 0A 59 -2,-1.4 -7,-3.1 -7,-1.3 2,-0.2 -0.397 27.4-155.1 -90.8 166.3 21.3 7.8 18.7 14 14 A E E -A 5 0A 111 -9,-0.3 -9,-0.3 -2,-0.1 2,-0.2 -0.665 22.6-169.3-145.5 85.8 23.2 8.5 15.5 15 15 A V E -A 4 0A 12 -11,-1.3 -11,-2.9 -2,-0.2 2,-0.3 -0.513 27.8-110.5 -84.7 142.1 22.4 5.9 12.9 16 16 A D E > -A 3 0A 48 -13,-0.3 3,-3.5 -2,-0.2 4,-0.5 -0.512 24.7-134.0 -66.3 122.7 24.1 5.2 9.5 17 17 A T G > S+ 0 0 10 -15,-3.1 3,-1.2 -2,-0.3 -1,-0.2 0.762 105.0 70.7 -54.1 -22.7 21.6 6.2 6.8 18 18 A S G 3 S+ 0 0 89 -16,-0.3 -1,-0.3 1,-0.3 -15,-0.1 0.672 96.2 51.3 -67.7 -15.3 22.5 2.9 5.2 19 19 A K G < S+ 0 0 92 -3,-3.5 16,-2.6 15,-0.1 2,-0.3 0.501 84.2 111.4 -97.0 -6.2 20.6 1.2 8.0 20 20 A I E < -B 34 0B 14 -3,-1.2 14,-0.3 -4,-0.5 3,-0.1 -0.534 43.2-179.0 -70.9 132.5 17.6 3.4 7.4 21 21 A K E + 0 0 107 12,-2.7 2,-0.4 1,-0.3 13,-0.2 0.877 61.0 10.5 -97.5 -54.8 14.7 1.3 6.1 22 22 A K E -B 33 0B 132 11,-0.6 11,-1.9 2,-0.0 2,-0.4 -0.967 61.4-170.0-131.3 148.9 11.7 3.5 5.5 23 23 A V E +B 32 0B 9 -2,-0.4 2,-0.3 9,-0.2 9,-0.2 -0.992 13.8 156.9-139.1 142.7 11.4 7.3 5.5 24 24 A W E -B 31 0B 92 7,-2.4 7,-3.2 -2,-0.4 2,-0.4 -0.975 39.3-104.4-158.5 164.6 8.4 9.5 5.4 25 25 A R E -B 30 0B 113 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.835 26.1-178.9 -96.1 136.1 7.2 12.9 6.3 26 26 A V E > S-B 29 0B 79 3,-2.3 3,-2.5 -2,-0.4 2,-0.1 -0.963 70.7 -48.2-129.6 110.2 4.9 13.4 9.4 27 27 A G T 3 S- 0 0 66 -2,-0.5 0, 0.0 1,-0.3 0, 0.0 -0.395 121.9 -25.5 62.5-130.9 4.0 17.1 9.6 28 28 A K T 3 S+ 0 0 187 -2,-0.1 19,-1.2 -3,-0.1 -1,-0.3 0.343 122.4 95.6 -97.4 9.3 7.3 19.0 9.2 29 29 A A E < -BC 26 46B 30 -3,-2.5 -3,-2.3 17,-0.2 2,-0.6 -0.607 69.7-134.3-102.0 160.2 9.3 16.1 10.5 30 30 A V E -BC 25 45B 0 15,-3.4 15,-2.7 -5,-0.2 2,-0.3 -0.961 29.6-172.1-110.5 118.2 11.2 13.4 8.7 31 31 A S E +BC 24 44B 18 -7,-3.2 -7,-2.4 -2,-0.6 2,-0.3 -0.739 8.6 165.5-111.2 158.5 10.4 10.0 10.3 32 32 A F E -BC 23 43B 0 11,-2.8 11,-2.5 -2,-0.3 2,-0.3 -0.986 30.6-131.4-162.8 168.1 12.0 6.7 9.6 33 33 A T E -BC 22 42B 24 -11,-1.9 -12,-2.7 -2,-0.3 -11,-0.6 -0.835 28.6-176.0-118.5 160.0 12.6 3.1 10.6 34 34 A Y E -BC 20 41B 5 7,-2.0 7,-2.7 -2,-0.3 2,-0.6 -0.988 37.3 -91.5-153.2 160.3 16.1 1.5 10.7 35 35 A D E - C 0 40B 47 -16,-2.6 2,-0.7 -2,-0.3 5,-0.2 -0.693 37.0-168.9 -75.0 117.6 17.8 -1.7 11.3 36 36 A D E > - C 0 39B 55 3,-3.6 3,-2.1 -2,-0.6 -1,-0.1 -0.697 68.1 -62.3-111.5 76.1 18.6 -1.7 15.0 37 37 A N T 3 S- 0 0 140 -2,-0.7 3,-0.1 1,-0.3 -1,-0.1 0.920 116.5 -32.3 46.7 52.6 20.9 -4.7 15.2 38 38 A G T 3 S+ 0 0 59 1,-0.4 -1,-0.3 0, 0.0 2,-0.1 -0.056 127.9 86.5 102.2 -37.1 18.1 -7.0 14.1 39 39 A K E < S-C 36 0B 147 -3,-2.1 -3,-3.6 1,-0.0 2,-0.7 -0.464 85.1-109.2 -89.9 169.2 15.2 -5.1 15.7 40 40 A T E -C 35 0B 80 -5,-0.2 -5,-0.2 -2,-0.1 2,-0.2 -0.893 36.0-161.0-105.2 113.6 13.4 -2.3 13.8 41 41 A G E -C 34 0B 8 -7,-2.7 -7,-2.0 -2,-0.7 2,-0.4 -0.501 3.5-145.6 -88.3 164.7 14.2 1.1 15.4 42 42 A R E +C 33 0B 146 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.976 24.7 156.3-129.8 140.5 12.2 4.3 14.9 43 43 A G E -C 32 0B 2 -11,-2.5 -11,-2.8 -2,-0.4 2,-0.3 -0.967 15.8-168.7-156.2 164.1 13.4 7.8 14.8 44 44 A A E -C 31 0B 42 -37,-0.3 -37,-0.4 -2,-0.3 2,-0.3 -0.955 3.4-170.1-156.5 147.0 12.4 11.2 13.4 45 45 A V E -C 30 0B 11 -15,-2.7 -15,-3.4 -2,-0.3 2,-0.1 -0.942 34.3-100.7-134.5 161.2 14.1 14.5 13.1 46 46 A S E >> -C 29 0B 40 -2,-0.3 3,-1.3 -17,-0.2 4,-0.5 -0.461 42.3-111.9 -73.0 153.7 13.0 18.0 12.2 47 47 A E G >4 S+ 0 0 64 -19,-1.2 3,-1.2 1,-0.3 -1,-0.1 0.860 117.3 58.5 -59.0 -32.6 13.8 18.7 8.5 48 48 A K G 34 S+ 0 0 177 1,-0.3 -1,-0.3 3,-0.0 -19,-0.0 0.747 108.4 47.1 -68.2 -22.8 16.5 21.3 9.5 49 49 A D G <4 S+ 0 0 103 -3,-1.3 -44,-0.3 2,-0.1 -1,-0.3 0.453 91.0 103.4 -93.9 -6.1 18.2 18.6 11.4 50 50 A A S << S- 0 0 10 -3,-1.2 -46,-0.1 -4,-0.5 2,-0.0 -0.732 72.1-130.6 -85.3 126.7 18.0 16.1 8.6 51 51 A P >> - 0 0 37 0, 0.0 4,-1.7 0, 0.0 3,-1.3 -0.351 29.2-108.0 -67.9 150.9 21.2 15.6 6.6 52 52 A K H 3> S+ 0 0 147 1,-0.3 4,-3.5 2,-0.2 5,-0.2 0.832 118.0 64.0 -49.9 -38.4 20.7 15.9 2.8 53 53 A E H 3> S+ 0 0 68 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.885 103.8 45.8 -55.3 -40.3 21.1 12.1 2.5 54 54 A L H <> S+ 0 0 0 -3,-1.3 4,-2.4 2,-0.2 -1,-0.2 0.879 112.6 49.9 -72.1 -38.1 18.0 11.5 4.6 55 55 A L H X S+ 0 0 55 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.883 109.3 52.6 -67.8 -36.9 16.1 14.1 2.6 56 56 A D H X S+ 0 0 47 -4,-3.5 4,-2.4 2,-0.2 -2,-0.2 0.922 110.7 47.7 -60.7 -43.9 17.3 12.4 -0.7 57 57 A M H X S+ 0 0 36 -4,-2.1 4,-2.2 -5,-0.2 -2,-0.2 0.895 111.4 51.6 -63.1 -39.0 16.0 9.1 0.8 58 58 A L H X S+ 0 0 6 -4,-2.4 4,-3.1 2,-0.2 -2,-0.2 0.920 108.3 49.8 -63.4 -41.8 12.8 10.9 1.6 59 59 A A H X S+ 0 0 39 -4,-2.6 4,-1.0 1,-0.2 -2,-0.2 0.909 110.0 52.0 -66.6 -38.1 12.4 12.3 -1.9 60 60 A R H >X S+ 0 0 135 -4,-2.4 3,-0.7 2,-0.2 4,-0.6 0.923 111.4 46.5 -61.0 -41.5 13.0 8.8 -3.2 61 61 A A H >< S+ 0 0 16 -4,-2.2 3,-1.3 1,-0.3 -2,-0.2 0.925 108.9 55.5 -67.6 -36.4 10.3 7.5 -0.9 62 62 A E H 3< S+ 0 0 94 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.690 104.8 53.7 -70.9 -16.4 8.0 10.3 -1.9 63 63 A R H << S+ 0 0 162 -4,-1.0 -1,-0.3 -3,-0.7 -2,-0.2 0.601 80.5 124.3 -92.4 -6.9 8.4 9.3 -5.6 64 64 A E << - 0 0 140 -3,-1.3 2,-0.4 -4,-0.6 -3,-0.0 -0.174 50.2-148.2 -58.3 140.2 7.4 5.7 -5.0 65 65 A K 0 0 190 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.870 360.0 360.0-113.6 142.7 4.4 4.5 -7.1 66 66 A K 0 0 263 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.431 360.0 360.0 -4.2 360.0 1.8 1.9 -6.1