==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTV . COMPND 2 MOLECULE: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4884.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 70.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 37.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A V 0 0 82 0, 0.0 15,-2.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 121.2 27.4 8.5 7.8 2 3 A K E -A 15 0A 101 13,-0.2 2,-0.5 14,-0.1 13,-0.2 -0.883 360.0-151.0-108.5 135.7 26.1 8.5 11.4 3 4 A V E -A 14 0A 2 11,-3.1 11,-2.8 -2,-0.4 2,-0.4 -0.922 14.9-161.4-105.4 128.8 23.0 10.4 12.4 4 5 A K E +A 13 0A 116 -2,-0.5 2,-0.3 9,-0.2 9,-0.2 -0.890 25.0 137.0-113.9 138.3 23.0 11.5 16.0 5 6 A F E -A 12 0A 11 7,-2.0 7,-3.5 -2,-0.4 2,-0.4 -0.977 45.9-111.3-168.0 169.3 20.0 12.5 18.0 6 7 A K E +A 11 0A 139 -2,-0.3 2,-0.4 37,-0.3 5,-0.2 -0.956 29.8 177.8-118.7 132.1 18.2 12.2 21.3 7 8 A Y E > -A 10 0A 80 3,-2.4 3,-2.1 -2,-0.4 -2,-0.0 -0.990 69.2 -13.0-137.8 127.7 15.0 10.2 21.7 8 9 A K T 3 S- 0 0 181 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.882 129.9 -52.3 51.2 40.6 13.1 9.6 24.9 9 10 A G T 3 S+ 0 0 65 1,-0.2 2,-0.5 -3,-0.0 -1,-0.3 0.483 114.9 114.0 78.3 1.1 16.1 10.9 26.9 10 11 A E E < -A 7 0A 127 -3,-2.1 -3,-2.4 2,-0.0 2,-0.4 -0.929 62.8-135.1-110.3 129.9 18.6 8.6 25.3 11 12 A E E -A 6 0A 113 -2,-0.5 2,-0.3 -5,-0.2 -5,-0.2 -0.643 34.0-171.5 -79.1 132.1 21.5 10.0 23.0 12 13 A K E -A 5 0A 49 -7,-3.5 -7,-2.0 -2,-0.4 2,-0.4 -0.897 24.0-164.6-129.0 157.2 21.7 7.8 20.0 13 14 A E E +A 4 0A 120 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.978 16.3 177.9-137.6 121.1 23.9 7.3 16.9 14 15 A V E -A 3 0A 8 -11,-2.8 -11,-3.1 -2,-0.4 2,-0.2 -0.989 27.2-127.7-132.3 136.9 22.7 5.3 14.0 15 16 A D E > -A 2 0A 49 -2,-0.4 3,-2.4 -13,-0.2 4,-0.4 -0.584 23.5-124.9 -77.7 142.8 24.5 4.6 10.7 16 17 A T G > S+ 0 0 12 -15,-2.8 3,-1.3 1,-0.3 -1,-0.1 0.764 108.1 70.6 -59.9 -24.4 22.4 5.6 7.7 17 18 A S G 3 S+ 0 0 91 -16,-0.3 -1,-0.3 1,-0.2 -15,-0.1 0.704 97.6 51.5 -65.1 -13.7 22.8 2.0 6.4 18 19 A K G < S+ 0 0 108 -3,-2.4 16,-2.7 15,-0.1 -1,-0.2 0.515 83.0 114.7 -96.8 -7.6 20.5 0.9 9.2 19 20 A I E < -B 33 0B 16 -3,-1.3 14,-0.3 -4,-0.4 3,-0.1 -0.469 40.0-178.8 -69.7 129.0 17.7 3.4 8.4 20 21 A K E + 0 0 141 12,-2.5 2,-0.3 1,-0.3 13,-0.2 0.897 63.4 6.0 -93.7 -51.2 14.6 1.8 7.2 21 22 A K E -B 32 0B 138 11,-0.7 11,-2.1 2,-0.0 2,-0.4 -0.983 59.3-168.8-136.1 146.4 12.1 4.6 6.4 22 23 A V E +B 31 0B 14 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.995 14.3 162.9-136.1 136.4 12.5 8.3 6.3 23 24 A W E -B 30 0B 106 7,-2.7 7,-2.5 -2,-0.4 2,-0.5 -0.954 35.5-110.8-145.4 168.1 9.8 11.0 6.0 24 25 A R E -B 29 0B 108 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.901 23.5-176.9-104.5 128.6 9.2 14.6 6.5 25 26 A V E > -B 28 0B 81 3,-2.6 3,-2.4 -2,-0.5 2,-0.4 -0.961 69.8 -51.8-121.4 109.1 6.9 15.8 9.3 26 27 A G T 3 S- 0 0 66 -2,-0.5 -2,-0.0 1,-0.3 0, 0.0 -0.470 121.4 -25.1 62.6-117.5 6.6 19.6 9.1 27 28 A K T 3 S+ 0 0 186 -2,-0.4 19,-1.8 -3,-0.1 2,-0.3 0.078 122.2 94.5-112.5 19.7 10.2 20.8 9.0 28 29 A A E < -BC 25 45B 29 -3,-2.4 -3,-2.6 17,-0.2 2,-0.6 -0.839 69.2-134.8-111.6 154.9 11.6 17.8 10.7 29 30 A V E -BC 24 44B 0 15,-3.0 15,-2.5 -2,-0.3 2,-0.3 -0.949 27.7-172.3-110.2 117.4 13.0 14.5 9.2 30 31 A S E +BC 23 43B 21 -7,-2.5 -7,-2.7 -2,-0.6 2,-0.3 -0.809 9.2 165.6-112.6 150.1 11.7 11.5 11.0 31 32 A F E -BC 22 42B 0 11,-2.7 11,-2.1 -2,-0.3 2,-0.3 -0.975 30.9-133.9-158.6 166.2 12.8 7.9 10.6 32 33 A T E -BC 21 41B 23 -11,-2.1 -12,-2.5 -2,-0.3 -11,-0.7 -0.865 25.8-172.6-118.3 161.1 12.9 4.3 11.7 33 34 A Y E -BC 19 40B 14 7,-1.8 7,-2.7 -2,-0.3 2,-0.4 -0.989 29.2-100.0-151.7 156.5 16.0 2.2 11.8 34 35 A D E - C 0 39B 59 -16,-2.7 5,-0.2 -2,-0.3 2,-0.1 -0.619 27.8-178.1 -82.8 135.8 16.9 -1.4 12.5 35 36 A D E > - C 0 38B 66 3,-2.5 3,-1.3 -2,-0.4 -1,-0.1 -0.564 68.7 -71.3-131.0 67.0 18.2 -2.2 15.9 36 37 A N T 3 S- 0 0 158 1,-0.3 2,-0.8 -2,-0.1 3,-0.1 0.943 115.6 -19.9 40.4 72.2 19.0 -5.9 15.6 37 38 A G T 3 S+ 0 0 63 1,-0.2 -1,-0.3 0, 0.0 2,-0.1 -0.467 125.4 77.7 104.1 -65.1 15.4 -7.0 15.5 38 39 A K E < S-C 35 0B 148 -3,-1.3 -3,-2.5 -2,-0.8 2,-0.6 -0.471 76.2-125.3 -84.4 158.9 13.5 -4.1 17.0 39 40 A T E -C 34 0B 89 -5,-0.2 -5,-0.2 -2,-0.1 2,-0.2 -0.885 24.7-160.3-105.3 124.1 12.8 -1.0 15.1 40 41 A G E -C 33 0B 13 -7,-2.7 -7,-1.8 -2,-0.6 2,-0.3 -0.586 4.9-142.0 -98.6 169.4 13.8 2.3 16.6 41 42 A R E +C 32 0B 141 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.924 23.6 160.2-129.7 150.2 12.6 5.8 15.9 42 43 A G E -C 31 0B 1 -11,-2.1 -11,-2.7 -2,-0.3 2,-0.3 -0.967 13.8-165.8-158.7 168.6 14.4 9.1 15.7 43 44 A A E -C 30 0B 43 -2,-0.3 2,-0.3 -13,-0.2 -37,-0.3 -0.967 4.2-175.4-160.1 145.4 13.9 12.6 14.2 44 45 A V E -C 29 0B 17 -15,-2.5 -15,-3.0 -2,-0.3 2,-0.1 -0.941 38.8 -90.7-137.0 163.7 16.1 15.6 13.6 45 46 A S E >> -C 28 0B 41 -2,-0.3 3,-2.0 -17,-0.2 4,-0.5 -0.466 40.1-120.1 -65.8 142.6 15.7 19.1 12.3 46 47 A E G >4 S+ 0 0 78 -19,-1.8 3,-1.2 1,-0.3 -1,-0.2 0.880 116.1 60.2 -55.5 -31.8 16.2 19.2 8.6 47 48 A K G 34 S+ 0 0 174 -20,-0.3 -1,-0.3 1,-0.2 -19,-0.1 0.712 105.9 45.4 -71.9 -14.3 19.1 21.6 9.3 48 49 A D G <4 S+ 0 0 113 -3,-2.0 -1,-0.2 2,-0.1 -2,-0.2 0.341 88.7 107.3-104.9 4.5 20.8 19.0 11.4 49 50 A A S << S- 0 0 13 -3,-1.2 2,-0.1 -4,-0.5 -46,-0.1 -0.686 73.0-121.3 -84.7 138.5 20.4 16.1 9.0 50 51 A P >> - 0 0 37 0, 0.0 4,-1.8 0, 0.0 3,-1.1 -0.413 29.6-110.0 -70.5 153.1 23.5 14.9 7.1 51 52 A K H 3> S+ 0 0 146 1,-0.3 4,-2.9 2,-0.2 5,-0.2 0.884 116.5 62.6 -52.6 -38.8 23.0 15.2 3.3 52 53 A E H 3> S+ 0 0 83 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.898 104.4 46.0 -57.9 -37.0 22.9 11.4 3.0 53 54 A L H <> S+ 0 0 0 -3,-1.1 4,-2.2 2,-0.2 -1,-0.2 0.921 112.1 50.9 -71.1 -42.0 19.8 11.2 5.1 54 55 A L H X S+ 0 0 46 -4,-1.8 4,-2.6 1,-0.2 -2,-0.2 0.852 108.4 53.4 -61.9 -35.5 18.1 14.1 3.1 55 56 A D H X S+ 0 0 45 -4,-2.9 4,-2.4 -5,-0.2 -1,-0.2 0.887 105.9 52.3 -64.7 -38.1 19.0 12.2 -0.0 56 57 A M H X S+ 0 0 40 -4,-1.6 4,-2.1 -5,-0.2 -2,-0.2 0.909 110.7 49.0 -63.2 -39.4 17.3 9.1 1.3 57 58 A L H X S+ 0 0 4 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.932 110.3 49.5 -65.0 -44.2 14.2 11.3 2.0 58 59 A A H X S+ 0 0 27 -4,-2.6 4,-1.1 1,-0.2 -1,-0.2 0.906 110.8 50.5 -65.1 -38.6 14.2 12.8 -1.5 59 60 A R H >X S+ 0 0 128 -4,-2.4 4,-1.4 1,-0.2 3,-0.6 0.915 108.0 53.4 -65.5 -39.9 14.5 9.4 -3.1 60 61 A A H 3< S+ 0 0 27 -4,-2.1 -1,-0.2 1,-0.2 3,-0.2 0.880 104.3 55.1 -60.5 -39.7 11.6 8.2 -1.0 61 62 A E H 3< S+ 0 0 112 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.771 111.9 44.7 -66.1 -24.8 9.5 11.1 -2.2 62 63 A R H << S+ 0 0 171 -4,-1.1 -1,-0.2 -3,-0.6 -2,-0.2 0.651 86.1 116.6 -92.1 -18.2 10.2 10.0 -5.8 63 64 A E < 0 0 151 -4,-1.4 -3,-0.0 -3,-0.2 -4,-0.0 -0.217 360.0 360.0 -58.1 141.2 9.6 6.2 -5.4 64 65 A K 0 0 253 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.458 360.0 360.0-103.7 360.0 6.8 4.6 -7.3