==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTW . COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4887.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 36.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 209 0, 0.0 2,-0.5 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0 43.9 30.2 30.0 39.2 2 2 A V - 0 0 48 49,-0.0 15,-2.8 51,-0.0 16,-0.3 -0.936 360.0-147.0-113.9 128.7 27.7 32.4 40.8 3 3 A K E -A 16 0A 105 -2,-0.5 2,-0.5 13,-0.2 13,-0.2 -0.705 1.8-151.1 -96.8 140.5 26.5 31.8 44.3 4 4 A V E -A 15 0A 0 11,-2.7 11,-1.8 -2,-0.3 2,-0.4 -0.955 10.9-155.8-113.0 128.3 23.0 32.7 45.6 5 5 A K E +A 14 0A 98 -2,-0.5 2,-0.3 44,-0.3 9,-0.2 -0.834 26.1 146.7-102.7 140.0 22.7 33.6 49.3 6 6 A F E -A 13 0A 8 7,-2.3 7,-3.0 -2,-0.4 2,-0.6 -0.970 43.3-118.5-160.0 168.4 19.4 33.2 51.1 7 7 A K E +A 12 0A 133 37,-0.5 2,-0.6 -2,-0.3 3,-0.2 -0.909 29.5 174.0-121.7 105.1 17.9 32.3 54.5 8 8 A Y E > S-A 11 0A 66 3,-0.7 3,-0.6 -2,-0.6 -2,-0.1 -0.949 72.7 -8.9-113.6 117.8 15.7 29.3 54.6 9 9 A K T 3 S- 0 0 170 -2,-0.6 2,-3.6 1,-0.2 -1,-0.2 0.994 124.3 -57.0 62.3 67.8 14.6 28.3 58.1 10 10 A G T 3 S+ 0 0 70 -3,-0.2 -1,-0.2 1,-0.1 2,-0.0 -0.042 117.2 103.5 62.0 -42.3 16.7 30.6 60.2 11 11 A E E < S-A 8 0A 128 -2,-3.6 -3,-0.7 -3,-0.6 2,-0.3 -0.289 72.0-124.6 -71.4 155.5 19.9 29.2 58.7 12 12 A E E -A 7 0A 109 -5,-0.2 2,-0.3 -3,-0.1 -5,-0.2 -0.786 35.0-178.0 -96.4 142.8 21.9 31.0 56.0 13 13 A K E -A 6 0A 53 -7,-3.0 -7,-2.3 -2,-0.3 2,-0.4 -0.977 19.4-161.1-145.5 156.8 22.5 29.1 52.8 14 14 A E E -A 5 0A 113 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.998 9.4-179.0-137.5 139.5 24.3 29.4 49.5 15 15 A V E -A 4 0A 6 -11,-1.8 -11,-2.7 -2,-0.4 2,-0.3 -0.999 31.3-116.6-139.7 138.5 23.7 27.5 46.3 16 16 A D E > -A 3 0A 39 -2,-0.4 3,-3.3 -13,-0.2 4,-0.3 -0.607 25.9-126.3 -74.8 135.0 25.4 27.8 42.9 17 17 A T G > S+ 0 0 8 -15,-2.8 3,-1.6 -2,-0.3 -1,-0.2 0.756 107.2 74.4 -52.3 -25.2 23.0 29.0 40.3 18 18 A S G 3 S+ 0 0 91 -16,-0.3 -1,-0.3 1,-0.3 -15,-0.1 0.690 94.6 50.0 -64.4 -17.5 24.1 25.9 38.4 19 19 A K G < S+ 0 0 82 -3,-3.3 16,-3.0 15,-0.0 2,-0.5 0.457 82.9 113.7-100.5 1.9 22.1 23.7 40.8 20 20 A I E < -B 34 0B 19 -3,-1.6 14,-0.3 -4,-0.3 3,-0.1 -0.615 39.9-177.7 -78.4 121.9 18.8 25.8 40.4 21 21 A K E + 0 0 116 12,-1.4 2,-0.3 -2,-0.5 13,-0.2 0.765 64.3 10.1 -87.7 -32.3 16.0 23.8 38.8 22 22 A K E -B 33 0B 137 11,-1.5 11,-1.7 2,-0.0 2,-0.3 -0.994 57.7-168.6-153.9 145.7 13.3 26.4 38.6 23 23 A V E +B 32 0B 11 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.992 14.0 156.6-137.5 143.3 12.7 30.1 39.2 24 24 A W E -B 31 0B 101 7,-2.7 7,-3.2 -2,-0.3 2,-0.3 -0.981 30.8-118.3-159.7 165.1 9.7 32.3 39.5 25 25 A R E -B 30 0B 91 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.822 15.5-177.4-112.5 146.8 8.5 35.6 41.0 26 26 A A E > S-B 29 0B 49 3,-1.7 3,-2.3 -2,-0.3 2,-0.3 -0.885 75.3 -51.6-140.1 103.4 5.8 36.4 43.6 27 27 A G T 3 S- 0 0 62 -2,-0.3 -1,-0.0 1,-0.3 0, 0.0 -0.436 122.6 -21.8 62.9-122.4 5.6 40.2 43.9 28 28 A K T 3 S+ 0 0 138 -2,-0.3 19,-2.0 -3,-0.1 2,-0.5 0.255 116.4 102.3-103.3 14.2 9.2 41.3 44.5 29 29 A M E < -BC 26 46B 86 -3,-2.3 -3,-1.7 17,-0.2 2,-0.7 -0.833 61.9-147.4-100.2 126.9 10.4 37.9 45.8 30 30 A V E -BC 25 45B 0 15,-2.8 15,-2.2 -2,-0.5 2,-0.3 -0.862 24.0-169.0 -96.7 116.5 12.5 35.6 43.5 31 31 A S E +BC 24 44B 20 -7,-3.2 -7,-2.7 -2,-0.7 2,-0.3 -0.713 11.4 160.8-105.7 152.5 11.6 32.1 44.4 32 32 A F E -BC 23 43B 0 11,-2.4 11,-2.7 -2,-0.3 2,-0.3 -0.995 32.5-136.8-165.0 161.4 13.3 28.8 43.3 33 33 A T E -BC 22 42B 22 -11,-1.7 -11,-1.5 -2,-0.3 -12,-1.4 -0.885 27.7-174.9-118.1 153.4 14.0 25.2 43.9 34 34 A Y E -BC 20 41B 10 7,-2.3 7,-2.2 -2,-0.3 2,-1.1 -0.882 39.6 -82.2-141.2 171.3 17.5 23.8 43.4 35 35 A D E - C 0 40B 62 -16,-3.0 2,-1.4 -2,-0.3 5,-0.2 -0.704 40.3-167.8 -82.3 102.3 19.1 20.3 43.5 36 36 A D E > - C 0 39B 49 3,-3.0 3,-2.9 -2,-1.1 -1,-0.1 -0.746 68.0 -61.5 -92.3 87.2 19.6 19.7 47.2 37 37 A N T 3 S- 0 0 150 -2,-1.4 -1,-0.2 1,-0.3 3,-0.1 0.854 117.4 -28.4 33.8 64.0 21.9 16.7 46.9 38 38 A G T 3 S+ 0 0 73 1,-0.2 -1,-0.3 0, 0.0 2,-0.2 0.074 130.4 71.7 94.3 -28.2 19.4 14.6 45.0 39 39 A K E < S-C 36 0B 142 -3,-2.9 -3,-3.0 0, 0.0 2,-0.7 -0.671 91.7 -83.1-116.2 175.4 16.2 16.0 46.4 40 40 A T E -C 35 0B 76 -2,-0.2 2,-0.3 -5,-0.2 -5,-0.2 -0.699 40.6-172.0 -86.8 111.1 14.3 19.3 46.0 41 41 A G E -C 34 0B 5 -7,-2.2 -7,-2.3 -2,-0.7 2,-0.3 -0.692 10.2-148.7 -95.5 152.2 15.5 22.3 48.1 42 42 A R E +C 33 0B 144 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.928 23.2 154.7-123.5 146.6 13.6 25.6 48.2 43 43 A G E -C 32 0B 2 -11,-2.7 -11,-2.4 -2,-0.3 2,-0.3 -0.974 16.4-165.7-161.2 167.7 14.7 29.2 48.6 44 44 A A E -C 31 0B 33 -2,-0.3 -37,-0.5 -13,-0.2 2,-0.3 -0.986 3.0-172.5-158.0 151.6 13.9 32.8 47.9 45 45 A V E -C 30 0B 13 -15,-2.2 -15,-2.8 -2,-0.3 2,-0.1 -0.965 37.1 -94.1-143.3 162.1 15.5 36.2 48.0 46 46 A S E > -C 29 0B 48 -2,-0.3 3,-1.6 -17,-0.2 4,-0.3 -0.473 36.7-121.8 -69.5 149.4 14.5 39.8 47.6 47 47 A E G > S+ 0 0 34 -19,-2.0 3,-1.0 1,-0.3 -1,-0.2 0.809 115.8 66.2 -61.6 -22.9 15.0 40.9 43.9 48 48 A K G 3 S+ 0 0 147 1,-0.3 -1,-0.3 -20,-0.3 -19,-0.1 0.743 107.3 37.5 -68.1 -24.8 17.3 43.4 45.6 49 49 A D G < S+ 0 0 117 -3,-1.6 -44,-0.3 2,-0.1 -1,-0.3 0.238 88.5 118.7-110.5 11.2 19.6 40.6 46.7 50 50 A A < - 0 0 12 -3,-1.0 5,-0.1 -4,-0.3 -46,-0.1 -0.658 69.3-119.9 -82.6 123.3 19.3 38.5 43.6 51 51 A P >> - 0 0 31 0, 0.0 4,-1.9 0, 0.0 3,-1.2 -0.304 28.9-113.2 -56.8 144.1 22.6 38.0 41.8 52 52 A K H 3> S+ 0 0 146 1,-0.3 4,-1.7 2,-0.2 5,-0.2 0.890 118.1 58.7 -44.3 -43.2 22.3 39.4 38.2 53 53 A E H 3> S+ 0 0 72 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.850 103.3 49.4 -57.9 -39.7 22.6 35.8 37.0 54 54 A L H <> S+ 0 0 0 -3,-1.2 4,-2.1 1,-0.2 -1,-0.2 0.928 108.5 54.1 -69.8 -37.0 19.6 34.6 39.0 55 55 A L H X S+ 0 0 61 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.820 106.6 52.9 -63.3 -28.7 17.6 37.5 37.6 56 56 A D H X S+ 0 0 75 -4,-1.7 4,-1.8 -5,-0.2 -1,-0.2 0.816 107.5 50.7 -74.4 -34.1 18.6 36.4 34.1 57 57 A M H X S+ 0 0 44 -4,-1.5 4,-1.7 -3,-0.2 -2,-0.2 0.882 110.4 50.0 -69.9 -34.9 17.3 32.9 34.8 58 58 A L H X S+ 0 0 5 -4,-2.1 4,-3.2 2,-0.2 5,-0.3 0.952 108.4 51.4 -66.6 -49.6 14.0 34.4 36.1 59 59 A A H X S+ 0 0 30 -4,-2.4 4,-1.1 1,-0.3 -1,-0.2 0.909 110.3 51.0 -56.1 -40.4 13.6 36.5 32.9 60 60 A R H X S+ 0 0 142 -4,-1.8 4,-0.8 2,-0.2 -1,-0.3 0.885 110.7 47.4 -64.2 -37.0 14.2 33.3 31.0 61 61 A A H >< S+ 0 0 30 -4,-1.7 3,-0.8 -3,-0.3 -2,-0.2 0.924 111.1 51.9 -70.9 -39.1 11.5 31.5 33.0 62 62 A E H 3< S+ 0 0 114 -4,-3.2 -1,-0.2 1,-0.3 -2,-0.2 0.686 104.3 57.0 -68.3 -17.8 9.1 34.4 32.5 63 63 A R H 3< S+ 0 0 161 -4,-1.1 -1,-0.3 -5,-0.3 -2,-0.2 0.711 86.0 122.2 -82.9 -23.6 9.7 34.3 28.8 64 64 A E << + 0 0 72 -3,-0.8 -3,-0.1 -4,-0.8 -4,-0.0 0.017 28.9 165.4 -47.7 141.5 8.5 30.6 28.8 65 65 A K 0 0 170 1,-0.0 -1,-0.1 0, 0.0 -4,-0.0 0.589 360.0 360.0-125.7 -33.7 5.6 29.4 26.7 66 66 A K 0 0 229 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 0.348 360.0 360.0 9.8 360.0 6.0 25.6 26.8