==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 29-NOV-04 1WTX . COMPND 2 MOLECULE: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.-Y.CHEN,T.-P.KO,T.-W.LIN,C.-C.CHOU,C.-J.CHEN,A.H.-J.WANG . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5168.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 71.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 34.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 202 0, 0.0 2,-0.6 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0 77.6 29.5 6.1 6.6 2 2 A V - 0 0 37 49,-0.0 15,-2.2 2,-0.0 2,-0.5 -0.937 360.0-158.8-107.0 114.0 26.9 8.8 7.4 3 3 A K E -A 16 0A 79 -2,-0.6 2,-0.5 13,-0.2 13,-0.2 -0.823 3.7-154.7 -97.4 126.1 26.0 8.8 11.1 4 4 A V E -A 15 0A 3 11,-3.4 11,-1.8 -2,-0.5 2,-0.4 -0.882 11.7-162.3-101.0 123.5 22.7 10.4 12.3 5 5 A K E +A 14 0A 138 -2,-0.5 2,-0.3 9,-0.2 9,-0.2 -0.886 23.6 140.0-108.5 138.1 22.8 11.5 15.9 6 6 A F E -A 13 0A 11 7,-2.4 7,-3.2 -2,-0.4 2,-0.5 -0.979 45.1-113.5-167.3 161.9 19.6 12.2 17.9 7 7 A K E +A 12 0A 135 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.912 27.7 177.8-109.0 126.8 17.9 11.9 21.3 8 8 A Y E > S-A 11 0A 70 3,-2.7 3,-0.8 -2,-0.5 -2,-0.0 -0.928 73.5 -13.3-131.7 108.8 14.9 9.6 21.7 9 9 A K T 3 S- 0 0 181 -2,-0.5 2,-0.8 1,-0.2 -1,-0.2 0.970 126.8 -53.8 67.1 55.0 13.4 9.3 25.2 10 10 A G T 3 S+ 0 0 71 1,-0.2 2,-0.4 -3,-0.1 -1,-0.2 0.064 115.6 115.6 71.3 -30.0 16.3 10.8 27.0 11 11 A E E < -A 8 0A 123 -3,-0.8 -3,-2.7 -2,-0.8 2,-0.4 -0.595 63.8-137.5 -78.2 127.5 18.7 8.4 25.3 12 12 A E E -A 7 0A 143 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.675 32.8-172.5 -81.6 134.3 21.3 9.8 23.0 13 13 A K E -A 6 0A 47 -7,-3.2 -7,-2.4 -2,-0.4 2,-0.3 -0.937 23.2-160.3-135.8 158.7 21.5 7.7 19.8 14 14 A E E +A 5 0A 112 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.984 13.7 175.7-132.2 140.6 23.5 7.2 16.6 15 15 A V E -A 4 0A 7 -11,-1.8 -11,-3.4 -2,-0.3 2,-0.3 -0.987 27.8-126.4-148.7 138.5 22.4 5.3 13.5 16 16 A D E > -A 3 0A 32 -2,-0.3 3,-2.4 -13,-0.2 4,-0.4 -0.668 25.6-124.1 -83.0 139.2 24.1 4.8 10.1 17 17 A T G > S+ 0 0 13 -15,-2.2 3,-0.8 -2,-0.3 -1,-0.1 0.725 109.2 67.6 -55.3 -23.1 21.9 5.9 7.1 18 18 A S G 3 S+ 0 0 81 1,-0.2 -1,-0.3 -16,-0.2 -2,-0.0 0.764 98.8 50.3 -71.6 -21.9 22.3 2.4 5.7 19 19 A K G < S+ 0 0 106 -3,-2.4 16,-2.4 15,-0.1 2,-0.5 0.494 86.8 107.0 -90.5 -4.2 20.3 0.9 8.6 20 20 A I E < +B 34 0B 12 -3,-0.8 14,-0.3 -4,-0.4 3,-0.1 -0.666 44.1 179.7 -80.3 125.9 17.5 3.5 8.0 21 21 A K E + 0 0 128 12,-2.1 2,-0.3 -2,-0.5 13,-0.2 0.731 61.2 12.6 -96.1 -32.5 14.5 1.9 6.5 22 22 A K E -B 33 0B 142 11,-1.2 11,-2.0 2,-0.0 2,-0.3 -0.986 57.9-172.7-152.8 143.7 11.9 4.7 6.0 23 23 A V E +B 32 0B 11 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -1.000 13.2 154.2-142.2 138.4 11.9 8.5 6.2 24 24 A W E -B 31 0B 114 7,-2.3 7,-1.3 -2,-0.3 2,-0.4 -0.846 29.9-121.1-149.4 179.9 9.2 11.1 6.0 25 25 A R E -B 30 0B 99 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.994 12.2-171.8-137.4 139.8 8.5 14.6 7.1 26 26 A A E > S-B 29 0B 49 3,-2.6 3,-2.2 -2,-0.4 2,-0.2 -0.945 75.1 -51.7-128.9 101.5 5.9 16.3 9.3 27 27 A G T 3 S- 0 0 62 -2,-0.4 0, 0.0 1,-0.3 0, 0.0 -0.486 122.7 -21.1 66.1-132.2 6.3 20.0 9.1 28 28 A K T 3 S+ 0 0 172 -2,-0.2 19,-1.7 -3,-0.1 2,-0.4 0.287 118.2 102.4 -90.7 8.2 10.0 20.7 9.8 29 29 A M E < -BC 26 46B 97 -3,-2.2 -3,-2.6 17,-0.2 2,-0.7 -0.801 57.9-157.2 -96.8 128.1 10.4 17.4 11.6 30 30 A V E -BC 25 45B 0 15,-2.9 15,-2.0 -2,-0.4 2,-0.3 -0.920 18.8-178.0-108.1 109.0 12.2 14.5 9.7 31 31 A S E +BC 24 44B 17 -7,-1.3 -7,-2.3 -2,-0.7 2,-0.3 -0.789 5.4 164.7-109.6 151.0 11.1 11.1 11.3 32 32 A F E -BC 23 43B 1 11,-2.9 11,-1.7 -2,-0.3 2,-0.3 -0.930 28.9-127.1-153.5 174.2 12.3 7.7 10.4 33 33 A T E -BC 22 42B 25 -11,-2.0 -12,-2.1 -2,-0.3 -11,-1.2 -0.907 24.8-172.9-124.2 156.6 12.6 4.0 11.3 34 34 A Y E -BC 20 41B 13 7,-1.9 7,-2.8 -2,-0.3 2,-1.3 -0.984 35.6 -98.4-150.5 158.2 15.7 1.9 11.3 35 35 A D E - C 0 40B 86 -16,-2.4 5,-0.2 -2,-0.3 2,-0.1 -0.657 40.7-172.1 -79.6 92.5 16.7 -1.7 11.7 36 36 A D - 0 0 69 3,-2.0 2,-1.2 -2,-1.3 -21,-0.0 -0.403 56.2 -67.6 -74.5 167.0 17.8 -1.9 15.4 37 37 A N S S- 0 0 160 1,-0.2 2,-0.2 -2,-0.1 -1,-0.1 -0.432 116.9 -21.1 -62.6 95.9 19.4 -5.2 16.1 38 38 A G S S+ 0 0 76 -2,-1.2 -1,-0.2 1,-0.1 2,-0.2 -0.174 131.5 63.1 97.5 -43.7 16.3 -7.4 15.7 39 39 A K S S- 0 0 154 -2,-0.2 -3,-2.0 -4,-0.0 2,-0.6 -0.703 85.3-104.3-114.1 169.7 13.6 -4.8 16.2 40 40 A T E -C 35 0B 76 -2,-0.2 -5,-0.2 -5,-0.2 2,-0.2 -0.825 38.6-161.8 -95.8 118.3 12.5 -1.7 14.4 41 41 A G E -C 34 0B 9 -7,-2.8 -7,-1.9 -2,-0.6 2,-0.3 -0.538 5.2-138.5 -99.4 164.0 13.5 1.6 16.0 42 42 A R E +C 33 0B 149 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.904 24.9 154.6-122.6 151.6 12.3 5.2 15.7 43 43 A G E -C 32 0B 4 -11,-1.7 -11,-2.9 -2,-0.3 2,-0.3 -0.984 14.3-167.0-166.0 160.7 14.0 8.6 15.6 44 44 A A E -C 31 0B 34 -2,-0.3 2,-0.3 -13,-0.3 -13,-0.2 -0.979 4.0-174.5-151.8 155.7 13.5 12.1 14.3 45 45 A V E -C 30 0B 18 -15,-2.0 -15,-2.9 -2,-0.3 2,-0.1 -0.957 36.5 -90.5-148.4 164.1 15.6 15.3 13.8 46 46 A S E > -C 29 0B 40 -2,-0.3 3,-1.4 -17,-0.2 4,-0.4 -0.468 37.6-120.7 -71.6 144.9 15.2 18.9 12.8 47 47 A E G > S+ 0 0 58 -19,-1.7 3,-1.3 1,-0.3 -1,-0.1 0.875 115.4 57.5 -55.0 -37.2 15.6 19.5 9.1 48 48 A K G 3 S+ 0 0 173 1,-0.3 -1,-0.3 -20,-0.2 -2,-0.0 0.672 106.9 46.3 -72.8 -14.7 18.4 21.8 10.0 49 49 A D G < S+ 0 0 108 -3,-1.4 -1,-0.3 2,-0.1 -44,-0.2 0.338 89.4 110.9-104.1 4.9 20.3 19.1 11.8 50 50 A A < - 0 0 15 -3,-1.3 2,-0.2 -4,-0.4 -46,-0.0 -0.590 69.5-126.6 -82.7 136.0 19.8 16.5 9.0 51 51 A P >> - 0 0 39 0, 0.0 4,-1.5 0, 0.0 3,-1.4 -0.607 27.9-112.3 -76.2 146.3 22.8 15.4 7.1 52 52 A K H 3> S+ 0 0 146 1,-0.3 4,-2.6 -2,-0.2 5,-0.2 0.854 116.3 62.7 -44.4 -43.0 22.3 15.8 3.2 53 53 A E H 3> S+ 0 0 78 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.910 104.9 46.2 -52.4 -43.3 22.3 12.1 2.8 54 54 A L H <> S+ 0 0 0 -3,-1.4 4,-1.7 1,-0.2 -1,-0.2 0.893 111.4 51.1 -66.0 -40.9 19.2 11.8 5.0 55 55 A L H X S+ 0 0 51 -4,-1.5 4,-2.6 2,-0.2 -2,-0.2 0.850 108.4 52.9 -65.0 -34.6 17.4 14.6 3.1 56 56 A D H X S+ 0 0 42 -4,-2.6 4,-2.2 2,-0.2 -1,-0.2 0.887 106.4 52.3 -69.4 -39.8 18.2 12.9 -0.2 57 57 A M H X S+ 0 0 39 -4,-1.9 4,-2.2 -5,-0.2 -1,-0.2 0.907 111.8 47.5 -59.6 -39.7 16.7 9.7 1.1 58 58 A L H X S+ 0 0 3 -4,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.930 110.4 50.9 -64.0 -49.2 13.6 11.8 2.0 59 59 A A H X S+ 0 0 26 -4,-2.6 4,-0.7 1,-0.2 -2,-0.2 0.842 111.8 48.3 -58.1 -37.2 13.5 13.5 -1.5 60 60 A R H >X S+ 0 0 132 -4,-2.2 4,-1.5 2,-0.2 3,-0.9 0.898 107.6 54.9 -70.6 -42.1 13.7 10.0 -3.1 61 61 A A H 3< S+ 0 0 27 -4,-2.2 -2,-0.2 1,-0.3 3,-0.2 0.886 105.5 53.6 -59.0 -36.7 10.9 8.7 -0.9 62 62 A E H 3< S+ 0 0 120 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.751 112.0 44.4 -67.9 -24.5 8.7 11.6 -2.2 63 63 A R H << S+ 0 0 166 -3,-0.9 -1,-0.2 -4,-0.7 -2,-0.2 0.630 81.1 125.8 -96.2 -14.7 9.4 10.6 -5.8 64 64 A E < - 0 0 123 -4,-1.5 -3,-0.0 -3,-0.2 -4,-0.0 -0.204 44.3-165.6 -47.4 123.8 8.9 6.8 -5.3 65 65 A K 0 0 197 1,-0.2 -1,-0.2 0, 0.0 -4,-0.0 0.251 360.0 360.0 -91.4 8.2 6.3 5.7 -7.9 66 66 A K 0 0 217 -5,-0.1 -1,-0.2 0, 0.0 -5,-0.0 0.250 360.0 360.0 147.9 360.0 6.3 2.7 -5.6