==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 05-JAN-05 1WWD . COMPND 2 MOLECULE: NUCLEOPROTEIN P10; . SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS; . AUTHOR A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6714.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 160 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 150.7 2.1 0.0 -1.2 2 2 A T - 0 0 119 2,-0.0 2,-0.5 0, 0.0 0, 0.0 -0.971 360.0-172.8-147.5 127.8 5.0 -2.3 -2.2 3 3 A V + 0 0 147 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.835 45.5 104.7-123.9 91.2 7.8 -1.7 -4.6 4 4 A V + 0 0 127 -2,-0.5 2,-0.3 2,-0.0 -2,-0.0 -0.786 32.0 120.3-169.9 121.5 9.8 -4.9 -5.0 5 5 A S - 0 0 114 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.954 42.2-128.9-175.1 162.0 10.0 -7.5 -7.8 6 6 A G + 0 0 66 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.983 33.5 149.2-131.0 121.7 12.3 -9.1 -10.4 7 7 A Q + 0 0 167 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.716 24.7 117.3-154.2 96.0 11.6 -9.3 -14.1 8 8 A K - 0 0 174 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.970 38.0-156.5-160.5 145.9 14.4 -9.4 -16.6 9 9 A Q + 0 0 189 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.900 38.6 126.5-132.6 103.1 15.8 -11.7 -19.2 10 10 A D + 0 0 107 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.951 19.0 162.2-158.1 135.2 19.4 -11.3 -20.2 11 11 A R - 0 0 240 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.982 14.3-160.1-156.4 144.4 22.5 -13.5 -20.3 12 12 A Q + 0 0 196 -2,-0.3 -2,-0.0 2,-0.1 0, 0.0 -0.810 48.3 58.0-123.8 164.6 25.9 -13.6 -21.9 13 13 A G S S- 0 0 72 -2,-0.3 2,-0.1 2,-0.0 0, 0.0 0.444 79.4 -89.5 88.3 132.7 28.4 -16.2 -22.8 14 14 A G + 0 0 66 6,-0.0 2,-0.2 0, 0.0 -2,-0.1 -0.374 51.5 157.0 -72.9 151.6 27.9 -19.3 -25.0 15 15 A E - 0 0 107 1,-0.1 5,-0.1 -2,-0.1 4,-0.1 -0.744 34.4-153.9-177.8 126.4 26.7 -22.6 -23.4 16 16 A R S S- 0 0 220 3,-0.3 -1,-0.1 -2,-0.2 4,-0.1 0.990 78.4 -56.0 -67.2 -63.5 25.0 -25.6 -24.7 17 17 A R S S+ 0 0 221 2,-0.3 3,-0.1 0, 0.0 -1,-0.1 0.016 123.1 61.8-179.9 51.7 23.3 -26.8 -21.5 18 18 A R S > S- 0 0 134 1,-0.3 3,-2.3 0, 0.0 -2,-0.1 -0.011 91.9-111.4-179.9 54.7 25.9 -27.2 -18.8 19 19 A S T 3 S- 0 0 72 1,-0.3 -1,-0.3 -4,-0.1 -3,-0.3 0.051 77.7 -37.1 39.4-150.4 27.7 -24.0 -18.0 20 20 A Q T 3 S+ 0 0 135 -5,-0.1 2,-1.6 -3,-0.1 -1,-0.3 -0.046 82.2 160.6 -91.0 30.9 31.3 -24.0 -19.0 21 21 A L < - 0 0 58 -3,-2.3 6,-0.1 2,-0.1 -2,-0.0 -0.345 29.0-155.5 -57.1 88.0 31.6 -27.6 -18.0 22 22 A D > - 0 0 79 -2,-1.6 3,-2.1 1,-0.1 -2,-0.0 -0.224 27.8-110.3 -65.6 158.6 34.7 -28.3 -20.0 23 23 A R T 3 S+ 0 0 211 1,-0.3 -1,-0.1 12,-0.0 -2,-0.1 0.579 125.1 38.3 -66.2 -8.6 35.5 -31.8 -21.1 24 24 A D T 3 S+ 0 0 84 2,-0.1 9,-2.0 11,-0.0 2,-0.5 -0.048 96.3 104.8-130.2 28.0 38.3 -31.6 -18.6 25 25 A Q B < S-A 32 0A 31 -3,-2.1 7,-0.3 7,-0.2 11,-0.2 -0.962 74.2-118.5-117.8 124.6 36.5 -29.7 -15.9 26 26 A C - 0 0 0 5,-2.9 4,-0.3 -2,-0.5 9,-0.1 -0.364 15.5-155.0 -59.6 130.9 35.3 -31.4 -12.8 27 27 A A S S+ 0 0 56 3,-0.1 -1,-0.1 2,-0.1 8,-0.1 -0.127 86.4 52.4 -99.8 34.4 31.5 -31.1 -12.6 28 28 A Y S S+ 0 0 99 3,-0.1 -1,-0.1 14,-0.0 7,-0.0 0.587 126.2 9.3-129.4 -58.0 31.6 -31.4 -8.8 29 29 A C S S- 0 0 38 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.631 98.9-116.5-101.2 -22.3 34.0 -28.9 -7.2 30 30 A K + 0 0 116 1,-0.3 2,-0.5 -4,-0.3 -3,-0.1 0.715 63.7 149.0 90.2 25.8 34.5 -27.0 -10.5 31 31 A E > - 0 0 115 3,-0.1 -5,-2.9 -6,-0.0 3,-0.5 -0.823 41.7-137.9 -97.7 129.2 38.2 -27.9 -10.6 32 32 A K B 3 S+A 25 0A 159 -2,-0.5 -7,-0.2 -7,-0.3 3,-0.1 -0.715 81.9 45.8 -87.8 131.9 39.8 -28.4 -14.0 33 33 A G T 3 S+ 0 0 53 -9,-2.0 2,-0.3 -2,-0.4 -1,-0.2 -0.210 103.6 57.4 133.4 -42.0 42.2 -31.3 -14.3 34 34 A H S < S- 0 0 40 -3,-0.5 -1,-0.3 -10,-0.1 -8,-0.2 -0.826 78.4-118.2-119.3 158.4 40.2 -34.1 -12.7 35 35 A W > - 0 0 119 -2,-0.3 3,-1.9 -9,-0.1 -9,-0.2 -0.533 27.9-112.6 -91.8 160.9 36.8 -35.6 -13.5 36 36 A A G > S+ 0 0 23 1,-0.3 3,-2.1 -11,-0.2 5,-0.1 0.860 120.9 60.4 -59.0 -36.9 33.9 -35.6 -11.1 37 37 A K G 3 S+ 0 0 167 1,-0.3 -1,-0.3 3,-0.0 -11,-0.0 0.613 113.9 38.0 -66.0 -11.1 34.3 -39.3 -10.9 38 38 A D G < S+ 0 0 124 -3,-1.9 -1,-0.3 3,-0.0 -2,-0.2 -0.005 85.8 143.2-126.8 24.5 37.7 -38.5 -9.6 39 39 A C X - 0 0 7 -3,-2.1 3,-1.6 1,-0.1 -3,-0.1 -0.519 48.9-144.5 -71.0 131.4 36.8 -35.5 -7.5 40 40 A P T 3 S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.439 101.3 60.5 -75.0 0.6 38.8 -35.4 -4.3 41 41 A K T 3 S+ 0 0 148 -5,-0.1 -2,-0.1 2,-0.0 -5,-0.0 0.159 80.1 122.5-110.3 13.6 35.6 -34.0 -2.7 42 42 A K < - 0 0 96 -3,-1.6 -5,-0.0 1,-0.1 2,-0.0 -0.421 66.3-105.9 -76.8 153.4 33.7 -37.1 -3.5 43 43 A P - 0 0 97 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.248 32.2-165.2 -75.1 166.1 32.0 -39.1 -0.7 44 44 A R - 0 0 242 -2,-0.0 3,-0.3 3,-0.0 0, 0.0 -0.932 23.7 -43.5-157.9 130.0 33.2 -42.4 0.6 45 45 A G - 0 0 55 1,-0.3 2,-0.1 -2,-0.3 3,-0.0 -0.717 31.4-122.7 128.4-178.4 31.6 -45.1 2.7 46 46 A P - 0 0 128 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.364 66.6-129.0 -75.0 135.4 30.3 -46.6 4.6 47 47 A R S S+ 0 0 239 -3,-0.3 -3,-0.0 -2,-0.1 0, 0.0 -0.292 72.2 98.9 -51.9 113.8 33.7 -48.2 5.1 48 48 A G - 0 0 47 -2,-0.1 2,-1.8 -3,-0.0 -1,-0.1 0.065 51.7-160.4 160.0 77.1 33.0 -51.9 4.9 49 49 A P + 0 0 94 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.542 46.9 127.5 -75.0 84.4 33.6 -53.8 1.6 50 50 A R + 0 0 195 -2,-1.8 3,-0.1 1,-0.1 0, 0.0 -0.698 15.8 155.6-144.7 86.5 31.5 -56.8 2.3 51 51 A P S S- 0 0 133 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.947 79.9 -23.3 -75.1 -52.6 28.9 -57.6 -0.4 52 52 A Q - 0 0 136 2,-0.0 2,-1.5 0, 0.0 -2,-0.0 -0.688 54.6-147.2-167.1 106.5 28.5 -61.3 0.4 53 53 A T - 0 0 117 -2,-0.2 2,-0.1 -3,-0.1 -3,-0.0 -0.623 30.8-173.9 -80.0 90.1 31.0 -63.5 2.2 54 54 A S - 0 0 83 -2,-1.5 2,-0.5 1,-0.0 -2,-0.0 -0.290 19.9-130.0 -79.8 168.4 30.4 -66.8 0.4 55 55 A L 0 0 174 1,-0.1 -2,-0.0 -2,-0.1 -1,-0.0 -0.953 360.0 360.0-127.1 110.7 32.0 -70.1 1.4 56 56 A L 0 0 206 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 0.132 360.0 360.0-151.1 360.0 33.6 -72.2 -1.3