==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 01-FEB-05 1WXU . COMPND 2 MOLECULE: PEROXISOMAL BIOGENESIS FACTOR 13; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.YONEYAMA,M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7171.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 47.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 20.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 140 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-151.5 22.0 -5.3 7.5 2 2 A S - 0 0 121 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.674 360.0-144.4-118.2 173.4 20.3 -2.3 9.0 3 3 A S + 0 0 130 -2,-0.2 2,-0.1 2,-0.0 0, 0.0 -0.791 23.1 151.3-131.6 174.3 17.1 -0.3 8.4 4 4 A G + 0 0 68 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.323 7.4 153.2 156.1 118.5 15.9 3.3 8.5 5 5 A S - 0 0 119 -2,-0.1 2,-0.2 2,-0.0 -2,-0.0 -0.983 14.7-165.5-159.7 148.3 13.3 5.4 6.7 6 6 A S + 0 0 121 -2,-0.3 2,-1.3 3,-0.0 -2,-0.0 -0.731 59.2 33.8-128.4 177.4 11.1 8.4 7.3 7 7 A G S S+ 0 0 55 -2,-0.2 2,-1.6 1,-0.1 -2,-0.0 -0.633 95.0 74.9 81.7 -93.8 8.1 10.1 5.8 8 8 A T + 0 0 77 -2,-1.3 3,-0.3 1,-0.2 -1,-0.1 -0.329 53.2 154.7 -57.4 87.1 6.1 7.3 4.3 9 9 A N >> + 0 0 58 -2,-1.6 4,-1.5 1,-0.2 6,-1.0 -0.168 20.5 128.7-109.9 37.7 4.7 6.0 7.6 10 10 A W T 45 + 0 0 18 1,-0.2 3,-0.2 4,-0.2 -1,-0.2 0.897 68.7 60.6 -58.3 -42.3 1.6 4.4 6.1 11 11 A A T 45S+ 0 0 8 -3,-0.3 -1,-0.2 1,-0.3 32,-0.1 0.879 108.5 43.5 -52.9 -41.3 2.4 1.2 8.0 12 12 A S T 45S- 0 0 51 -3,-0.4 -1,-0.3 52,-0.1 -2,-0.2 0.771 116.7-116.9 -76.1 -27.1 2.1 3.0 11.3 13 13 A G T <5S+ 0 0 10 -4,-1.5 70,-0.3 -3,-0.2 -3,-0.2 0.118 88.0 112.1 111.6 -20.1 -1.0 4.8 10.1 14 14 A E S > - 0 0 40 -30,-0.4 3,-2.5 1,-0.1 4,-2.4 -0.288 39.4-105.9 -62.2 145.3 -1.7 3.3 -2.1 47 47 A K T 34 S+ 0 0 190 1,-0.3 -1,-0.1 2,-0.2 -2,-0.1 0.831 120.3 68.5 -38.1 -41.8 -1.0 2.1 -5.6 48 48 A E T 34 S+ 0 0 173 1,-0.2 -1,-0.3 0, 0.0 -2,-0.0 0.888 112.7 28.8 -47.0 -45.8 1.2 5.2 -5.9 49 49 A Q T <4 S+ 0 0 105 -3,-2.5 -2,-0.2 9,-0.1 -1,-0.2 0.873 97.2 109.2 -83.8 -41.7 3.6 3.6 -3.4 50 50 A Q S < S- 0 0 28 -4,-2.4 7,-0.1 8,-0.1 -4,-0.0 0.088 74.4-109.8 -35.3 144.2 2.9 0.0 -4.2 51 51 A P - 0 0 57 0, 0.0 7,-0.1 0, 0.0 -1,-0.0 0.058 28.6 -97.9 -69.8-175.2 5.7 -1.7 -6.0 52 52 A K S S+ 0 0 182 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.856 89.1 108.1 -75.6 -36.7 5.8 -2.9 -9.7 53 53 A V - 0 0 40 1,-0.1 2,-0.4 2,-0.1 0, 0.0 0.015 65.5-135.5 -40.7 146.2 4.9 -6.5 -8.8 54 54 A R S S+ 0 0 226 1,-0.1 -1,-0.1 3,-0.1 3,-0.1 -0.918 76.7 15.9-114.7 137.2 1.4 -7.4 -9.8 55 55 A G S S+ 0 0 59 -2,-0.4 2,-0.5 1,-0.1 16,-0.4 -0.179 104.8 88.0 100.0 -41.0 -1.1 -9.4 -7.6 56 56 A W - 0 0 93 14,-0.1 2,-0.4 15,-0.1 -1,-0.1 -0.818 66.0-149.9 -97.7 128.8 0.8 -8.8 -4.4 57 57 A L E - E 0 69B 60 12,-2.2 12,-2.0 -2,-0.5 2,-0.6 -0.828 17.9-122.4-100.4 132.6 0.1 -5.7 -2.3 58 58 A L E + E 0 68B 36 -2,-0.4 -13,-1.9 10,-0.2 2,-0.3 -0.610 50.2 148.8 -75.5 114.3 2.8 -4.2 -0.2 59 59 A A E -DE 44 67B 0 8,-2.3 8,-2.6 -2,-0.6 2,-0.6 -0.976 44.3-127.2-145.5 157.2 1.6 -4.0 3.4 60 60 A S E -D 43 0B 0 -17,-1.3 -17,-1.1 -2,-0.3 6,-0.2 -0.910 12.7-165.5-112.0 109.4 3.0 -4.2 7.0 61 61 A L S S+ 0 0 41 -2,-0.6 -1,-0.2 -19,-0.2 -20,-0.1 0.977 92.3 25.0 -52.8 -66.3 1.3 -6.8 9.2 62 62 A D S S- 0 0 139 3,-0.2 -1,-0.1 -20,-0.1 -2,-0.1 0.985 111.0-112.7 -64.2 -60.7 2.8 -5.5 12.5 63 63 A G S S+ 0 0 15 2,-0.5 -50,-0.1 -4,-0.1 3,-0.1 0.154 100.6 62.1 146.7 -19.9 3.3 -1.9 11.4 64 64 A Q S S+ 0 0 175 1,-0.2 2,-0.4 -53,-0.1 -53,-0.1 0.862 98.8 49.5 -96.6 -50.7 7.1 -1.4 11.4 65 65 A T S S- 0 0 86 -54,-0.1 -2,-0.5 -6,-0.0 2,-0.4 -0.757 71.9-153.5 -95.7 138.0 8.2 -3.9 8.7 66 66 A T + 0 0 58 -2,-0.4 -6,-0.3 -6,-0.2 2,-0.3 -0.874 21.1 159.4-112.4 143.3 6.5 -4.1 5.3 67 67 A G E - E 0 59B 4 -8,-2.6 -8,-2.3 -2,-0.4 2,-0.6 -0.856 45.0 -73.4-147.7-177.9 6.3 -7.1 3.0 68 68 A L E +cE 33 58B 35 -36,-0.8 -34,-0.7 -2,-0.3 -10,-0.2 -0.755 50.2 177.5 -89.0 120.3 4.5 -8.7 0.1 69 69 A I E - E 0 57B 0 -12,-2.0 -12,-2.2 -2,-0.6 -34,-0.1 -0.913 28.5-107.4-124.1 150.6 1.0 -10.0 1.0 70 70 A P - 0 0 13 0, 0.0 -14,-0.1 0, 0.0 -15,-0.0 -0.223 16.1-152.0 -69.8 161.5 -1.7 -11.7 -1.0 71 71 A A S > S+ 0 0 31 -16,-0.4 3,-2.2 2,-0.1 -15,-0.1 0.870 91.1 46.4 -98.9 -60.4 -5.0 -9.9 -2.0 72 72 A N T 3 S+ 0 0 140 1,-0.3 -49,-0.1 -17,-0.2 -17,-0.0 0.872 108.4 59.7 -51.3 -40.4 -7.6 -12.6 -2.4 73 73 A Y T 3 S+ 0 0 104 -50,-0.1 -50,-2.1 -51,-0.1 -49,-1.4 0.735 108.4 55.3 -61.6 -21.8 -6.4 -14.1 0.9 74 74 A V E < S-F 22 0C 10 -3,-2.2 2,-0.4 -52,-0.3 -52,-0.2 -0.826 74.5-146.4-114.5 153.5 -7.3 -10.8 2.5 75 75 A K E -F 21 0C 98 -54,-1.3 -54,-3.1 -2,-0.3 2,-0.3 -0.975 16.4-128.2-123.2 129.9 -10.6 -8.8 2.5 76 76 A I E +F 20 0C 71 -2,-0.4 -56,-0.2 -56,-0.3 -5,-0.0 -0.543 24.2 176.7 -76.2 135.6 -10.9 -5.1 2.5 77 77 A L - 0 0 102 -58,-1.3 -1,-0.2 -2,-0.3 -57,-0.1 0.754 67.8 -37.9-105.7 -38.6 -13.1 -3.6 5.2 78 78 A G - 0 0 37 -59,-0.8 -58,-0.1 2,-0.0 -1,-0.0 -0.300 57.0-124.5 167.4 102.3 -12.7 0.2 4.6 79 79 A K - 0 0 132 -61,-0.1 2,-0.3 -2,-0.1 -61,-0.2 -0.069 29.7-152.0 -51.4 154.7 -9.7 2.2 3.5 80 80 A R B -A 17 0A 168 -63,-1.7 -63,-1.4 0, 0.0 2,-0.1 -0.918 7.2-122.1-132.5 158.3 -8.7 5.1 5.8 81 81 A R - 0 0 209 -2,-0.3 5,-0.1 1,-0.2 -66,-0.1 -0.422 48.5 -65.8 -93.6 171.3 -6.9 8.4 5.4 82 82 A G - 0 0 16 -2,-0.1 -67,-0.2 1,-0.1 -1,-0.2 0.155 40.3-125.3 -46.6 172.5 -3.7 9.7 7.1 83 83 A R S > S+ 0 0 131 -69,-1.1 3,-2.6 -70,-0.3 -69,-0.1 0.873 103.6 58.8 -90.9 -46.4 -3.7 10.3 10.8 84 84 A K T 3 S+ 0 0 131 -70,-0.9 -1,-0.1 1,-0.3 -69,-0.1 0.899 91.7 70.4 -49.4 -46.2 -2.6 14.0 10.8 85 85 A T T > S+ 0 0 79 3,-0.1 3,-1.6 2,-0.1 4,-0.5 0.733 75.5 109.2 -45.1 -22.9 -5.5 14.9 8.7 86 86 A I T < S- 0 0 107 -3,-2.6 -3,-0.1 1,-0.3 -4,-0.0 -0.436 104.8 -20.9 -62.4 115.5 -7.5 14.2 11.9 87 87 A E T 3 S+ 0 0 200 -2,-0.4 -1,-0.3 2,-0.1 -2,-0.1 0.892 105.6 126.1 49.1 44.9 -8.7 17.6 13.2 88 88 A S S < S- 0 0 95 -3,-1.6 -2,-0.1 1,-0.3 -3,-0.1 0.885 70.6 -17.1 -95.2 -55.5 -6.0 19.3 11.1 89 89 A G S S- 0 0 50 -4,-0.5 -1,-0.3 1,-0.1 -2,-0.1 -0.740 85.0 -56.0-139.9-172.0 -7.8 21.9 9.1 90 90 A P - 0 0 134 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.278 49.2-178.9 -69.8 156.2 -11.3 22.9 7.8 91 91 A S - 0 0 112 -2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.990 31.6 -92.2-156.9 150.5 -13.5 20.6 5.7 92 92 A S 0 0 123 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.188 360.0 360.0 -61.1 154.9 -16.8 20.6 4.0 93 93 A G 0 0 122 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.138 360.0 360.0 -54.9 360.0 -19.9 19.4 5.9