==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-NOV-09 2WYQ . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.W.CHEN . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4757.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 140 0, 0.0 18,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 157.6 9.0 23.1 -2.1 2 2 A A - 0 0 23 18,-0.1 2,-0.3 1,-0.1 18,-0.2 -0.076 360.0-141.8 -56.9 150.9 5.6 24.9 -2.5 3 3 A V E -A 19 0A 48 16,-3.3 16,-2.5 2,-0.0 2,-0.5 -0.857 4.6-137.6-117.3 147.4 2.6 23.4 -0.8 4 4 A T E -A 18 0A 38 -2,-0.3 2,-0.5 14,-0.2 14,-0.2 -0.942 14.3-163.7-107.6 131.2 -0.9 23.3 -2.2 5 5 A I E -A 17 0A 2 12,-3.3 12,-2.5 -2,-0.5 2,-0.6 -0.949 7.1-151.8-112.7 134.3 -3.9 24.1 0.1 6 6 A T E -Ab 16 71A 10 64,-0.5 66,-2.6 -2,-0.5 2,-0.3 -0.902 18.5-163.6-108.6 123.9 -7.4 23.1 -0.9 7 7 A L E -Ab 15 72A 0 8,-3.2 8,-1.7 -2,-0.6 2,-0.4 -0.751 10.4-160.8-108.4 150.7 -10.1 25.4 0.6 8 8 A K E -Ab 14 73A 60 64,-2.2 66,-2.5 -2,-0.3 6,-0.2 -1.000 9.7-150.7-129.9 134.2 -13.8 25.1 1.0 9 9 A T E > - b 0 74A 3 4,-2.5 3,-2.1 -2,-0.4 66,-0.1 -0.494 34.3-103.0 -93.4 171.2 -16.3 27.9 1.5 10 10 A L T 3 S+ 0 0 100 64,-0.6 65,-0.1 1,-0.3 -1,-0.1 0.739 123.7 60.1 -64.5 -24.6 -19.6 27.8 3.4 11 11 A Q T 3 S- 0 0 130 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.281 121.6-110.0 -85.0 10.5 -21.3 27.8 -0.0 12 12 A Q S < S+ 0 0 135 -3,-2.1 2,-0.4 1,-0.3 -2,-0.1 0.710 70.5 144.9 70.9 22.9 -19.4 24.5 -0.8 13 13 A Q - 0 0 111 2,-0.0 -4,-2.5 0, 0.0 2,-0.3 -0.742 32.5-157.3 -91.6 141.2 -17.1 26.1 -3.3 14 14 A T E +A 8 0A 81 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.855 19.3 157.9-118.4 154.4 -13.6 24.8 -3.5 15 15 A F E -A 7 0A 29 -8,-1.7 -8,-3.2 -2,-0.3 2,-0.3 -0.969 29.3-120.5-168.0 161.0 -10.4 26.3 -4.8 16 16 A K E -A 6 0A 132 -2,-0.3 2,-0.4 -10,-0.2 -10,-0.2 -0.884 13.5-165.5-116.6 148.9 -6.6 25.8 -4.4 17 17 A I E -A 5 0A 9 -12,-2.5 -12,-3.3 -2,-0.3 2,-0.4 -0.999 11.2-149.8-131.3 133.1 -3.8 28.2 -3.2 18 18 A R E +A 4 0A 161 -2,-0.4 2,-0.3 -14,-0.2 -14,-0.2 -0.836 30.1 154.5-102.0 136.7 -0.1 27.5 -3.7 19 19 A M E -A 3 0A 3 -16,-2.5 -16,-3.3 -2,-0.4 -2,-0.0 -0.979 45.0 -93.7-151.0 169.4 2.3 28.9 -1.1 20 20 A E > - 0 0 90 -2,-0.3 3,-1.5 -18,-0.2 41,-0.3 -0.597 36.3-120.6 -85.4 152.6 5.7 28.3 0.5 21 21 A P T 3 S+ 0 0 18 0, 0.0 41,-2.4 0, 0.0 42,-0.3 0.744 112.5 51.6 -65.7 -27.6 5.8 26.2 3.7 22 22 A D T 3 S+ 0 0 103 39,-0.2 2,-0.2 38,-0.2 -2,-0.0 0.516 86.0 103.5 -85.9 -10.4 7.4 29.1 5.7 23 23 A E S < S- 0 0 60 -3,-1.5 38,-3.0 37,-0.1 39,-0.2 -0.532 73.3-120.2 -73.2 146.8 4.7 31.6 4.6 24 24 A T B > -E 60 0B 37 36,-0.3 4,-2.0 -2,-0.2 3,-0.4 -0.260 19.4-103.0 -86.3 169.3 2.2 32.2 7.4 25 25 A V H > S+ 0 0 0 34,-1.8 4,-2.5 31,-0.5 32,-0.2 0.867 122.4 61.0 -52.4 -40.4 -1.6 31.8 7.7 26 26 A K H > S+ 0 0 87 31,-2.7 4,-2.5 2,-0.2 -1,-0.2 0.925 103.1 49.6 -55.4 -45.8 -1.9 35.6 7.2 27 27 A V H > S+ 0 0 32 -3,-0.4 4,-2.6 30,-0.3 -2,-0.2 0.920 108.8 53.6 -60.6 -40.7 -0.2 35.1 3.7 28 28 A L H X S+ 0 0 0 -4,-2.0 4,-2.5 1,-0.2 -2,-0.2 0.925 108.5 48.8 -57.0 -48.7 -2.8 32.4 3.0 29 29 A K H X S+ 0 0 16 -4,-2.5 4,-2.6 2,-0.2 -2,-0.2 0.904 110.1 51.1 -59.7 -42.6 -5.6 34.7 3.9 30 30 A E H X S+ 0 0 97 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.917 111.1 48.9 -60.7 -42.4 -4.1 37.4 1.6 31 31 A K H X S+ 0 0 71 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.891 110.0 51.2 -62.9 -41.0 -3.9 34.9 -1.2 32 32 A I H X S+ 0 0 0 -4,-2.5 4,-3.0 2,-0.2 5,-0.4 0.906 108.4 51.7 -60.0 -45.8 -7.6 33.9 -0.5 33 33 A E H X S+ 0 0 61 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.900 109.8 49.9 -61.4 -40.6 -8.6 37.5 -0.7 34 34 A A H < S+ 0 0 81 -4,-2.1 -1,-0.2 1,-0.2 -2,-0.2 0.901 118.0 39.3 -62.1 -37.7 -6.8 37.9 -4.1 35 35 A E H < S+ 0 0 129 -4,-2.1 -2,-0.2 1,-0.1 -1,-0.2 0.827 130.2 26.7 -80.6 -37.5 -8.5 34.7 -5.4 36 36 A K H < S- 0 0 78 -4,-3.0 4,-0.3 5,-0.1 -3,-0.2 0.518 111.2-109.0-112.6 -9.8 -12.0 35.3 -3.9 37 37 A G X - 0 0 28 -4,-2.4 4,-2.1 -5,-0.4 3,-0.2 0.210 15.2 -99.6 96.7 147.7 -12.2 39.1 -3.6 38 38 A R T 4 S+ 0 0 108 1,-0.2 -1,-0.1 2,-0.2 -4,-0.1 0.693 112.9 67.8 -65.2 -27.5 -12.2 41.7 -0.8 39 39 A D T 4 S+ 0 0 165 2,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.932 121.1 12.2 -63.5 -51.9 -16.1 42.0 -1.0 40 40 A A T 4 S+ 0 0 49 -4,-0.3 -2,-0.2 -3,-0.2 -1,-0.2 0.680 137.0 39.0-101.9 -22.5 -16.8 38.5 0.4 41 41 A F < + 0 0 13 -4,-2.1 -2,-0.2 -8,-0.2 -4,-0.2 -0.329 67.2 169.5-130.2 47.9 -13.3 37.4 1.7 42 42 A P >> - 0 0 44 0, 0.0 3,-1.4 0, 0.0 4,-1.2 -0.367 42.3-122.4 -60.1 139.5 -11.6 40.4 3.3 43 43 A V G >4 S+ 0 0 24 1,-0.3 3,-0.7 2,-0.2 -13,-0.1 0.877 109.3 55.8 -47.8 -48.4 -8.5 39.2 5.2 44 44 A A G 34 S+ 0 0 95 1,-0.2 -1,-0.3 32,-0.0 33,-0.1 0.727 110.1 45.5 -66.0 -21.8 -9.7 40.6 8.5 45 45 A G G <4 S+ 0 0 8 -3,-1.4 32,-2.3 31,-0.1 -1,-0.2 0.652 87.3 109.7 -91.8 -18.1 -12.9 38.7 8.4 46 46 A Q E << -C 76 0A 0 -4,-1.2 2,-0.4 -3,-0.7 30,-0.2 -0.365 42.4-172.8 -69.9 135.9 -11.5 35.3 7.4 47 47 A K E -C 75 0A 69 28,-2.9 28,-2.6 -2,-0.1 2,-0.5 -0.999 10.3-156.6-124.2 123.4 -11.5 32.4 9.8 48 48 A L E -C 74 0A 0 -2,-0.4 7,-2.9 7,-0.4 2,-0.5 -0.896 7.0-163.2-107.5 131.2 -9.7 29.3 8.7 49 49 A I E +CD 73 54A 62 24,-2.7 24,-2.4 -2,-0.5 2,-0.3 -0.942 21.6 146.7-122.4 127.0 -10.6 25.9 10.3 50 50 A Y E > + D 0 53A 28 3,-2.2 3,-1.9 -2,-0.5 22,-0.1 -0.963 65.2 1.0-158.1 136.7 -8.5 22.8 10.1 51 51 A A T 3 S- 0 0 66 -2,-0.3 3,-0.1 1,-0.3 21,-0.0 0.854 128.8 -54.8 55.1 35.6 -7.8 19.8 12.4 52 52 A G T 3 S+ 0 0 81 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.603 117.5 106.3 77.8 12.3 -10.2 21.1 15.1 53 53 A K E < S-D 50 0A 102 -3,-1.9 -3,-2.2 3,-0.0 2,-0.6 -0.887 71.7-127.5-123.7 156.2 -8.4 24.5 15.2 54 54 A I E -D 49 0A 119 -2,-0.3 -5,-0.2 -5,-0.2 2,-0.1 -0.908 44.1-121.0 -97.1 118.9 -8.8 28.1 14.2 55 55 A L - 0 0 4 -7,-2.9 2,-0.4 -2,-0.6 -7,-0.4 -0.368 22.4-132.1 -74.0 133.9 -5.6 28.8 12.3 56 56 A S > - 0 0 67 -2,-0.1 3,-2.0 1,-0.1 -31,-0.5 -0.767 11.4-126.9 -93.7 137.1 -3.6 31.7 13.7 57 57 A D T 3 S+ 0 0 52 -2,-0.4 -31,-2.7 1,-0.3 -30,-0.3 0.715 102.2 46.7 -52.1 -43.2 -2.2 34.4 11.4 58 58 A D T 3 S+ 0 0 128 -33,-0.2 -1,-0.3 -34,-0.2 -34,-0.0 0.444 85.7 106.0 -91.7 8.4 1.5 34.4 12.4 59 59 A V S < S- 0 0 36 -3,-2.0 -34,-1.8 1,-0.1 -33,-0.1 -0.648 77.1-115.9 -84.8 129.8 2.0 30.6 12.3 60 60 A P B > -E 24 0B 36 0, 0.0 3,-1.8 0, 0.0 4,-0.3 -0.406 26.4-122.7 -59.2 137.6 4.0 29.3 9.3 61 61 A I G > S+ 0 0 4 -38,-3.0 3,-1.8 -41,-0.3 5,-0.5 0.837 107.5 65.5 -56.8 -35.2 1.7 27.1 7.3 62 62 A R G > S+ 0 0 139 -41,-2.4 3,-1.6 1,-0.3 -1,-0.3 0.795 88.7 68.9 -52.6 -34.1 3.9 24.0 7.7 63 63 A D G < S+ 0 0 105 -3,-1.8 -1,-0.3 -42,-0.3 -2,-0.2 0.683 95.8 53.1 -66.7 -17.8 3.3 24.0 11.4 64 64 A Y G < S- 0 0 44 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.470 99.3-139.5 -90.9 -8.2 -0.3 22.9 10.9 65 65 A R < - 0 0 216 -3,-1.6 2,-0.5 -4,-0.3 -3,-0.1 0.898 27.1-167.8 52.4 52.7 0.8 19.9 8.7 66 66 A I - 0 0 27 -5,-0.5 2,-0.3 2,-0.0 -1,-0.2 -0.585 13.9-138.7 -81.4 121.8 -2.0 20.5 6.2 67 67 A D > - 0 0 88 -2,-0.5 3,-1.7 1,-0.1 -61,-0.3 -0.667 8.1-139.5 -81.3 130.6 -2.6 17.6 3.8 68 68 A E T 3 S+ 0 0 48 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.727 103.0 63.7 -59.4 -17.8 -3.4 18.8 0.1 69 69 A K T 3 S+ 0 0 88 2,-0.1 -1,-0.3 -64,-0.0 2,-0.2 0.457 98.5 61.7 -97.1 -5.5 -6.0 15.9 0.1 70 70 A N S < S- 0 0 75 -3,-1.7 -64,-0.5 -64,-0.0 2,-0.4 -0.679 85.9-109.0-103.6 173.4 -8.1 17.4 2.8 71 71 A F E -b 6 0A 93 -2,-0.2 2,-0.5 -66,-0.1 -64,-0.2 -0.862 9.5-152.1-105.4 138.0 -10.0 20.8 3.0 72 72 A V E -b 7 0A 0 -66,-2.6 -64,-2.2 -2,-0.4 2,-0.4 -0.917 28.0-137.1 -93.7 122.6 -9.3 23.9 5.0 73 73 A V E -bC 8 49A 34 -24,-2.4 -24,-2.7 -2,-0.5 2,-0.5 -0.766 13.6-156.5 -87.7 130.7 -12.7 25.6 5.6 74 74 A V E +bC 9 48A 2 -66,-2.5 -64,-0.6 -2,-0.4 2,-0.3 -0.954 16.6 173.7-110.3 117.2 -12.8 29.4 5.1 75 75 A M E - C 0 47A 51 -28,-2.6 -28,-2.9 -2,-0.5 2,-0.4 -0.829 19.8-143.7-115.2 156.4 -15.6 31.2 6.9 76 76 A V E C 0 46A 56 -2,-0.3 -30,-0.2 -30,-0.2 -31,-0.1 -0.993 360.0 360.0-126.1 127.7 -16.0 35.0 7.1 77 77 A T 0 0 128 -32,-2.3 -2,-0.0 -2,-0.4 0, 0.0 -0.842 360.0 360.0-109.8 360.0 -17.3 36.8 10.2