==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/RNA 06-JAN-10 2X1A . COMPND 2 MOLECULE: MRNA 3'-END-PROCESSING PROTEIN RNA15; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR C.PANCEVAC,D.C.GOLDSTONE,A.RAMOS,I.A.TAYLOR . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5900.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 60.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 26.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 21.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A G 0 0 123 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 171.0 13.4 -12.7 18.7 2 16 A P - 0 0 110 0, 0.0 2,-0.4 0, 0.0 53,-0.0 -0.414 360.0-150.5 -79.9 163.5 10.0 -14.4 18.8 3 17 A S - 0 0 19 52,-0.1 78,-0.1 -2,-0.1 51,-0.1 -0.997 26.0-164.7-141.8 132.0 6.7 -12.6 19.3 4 18 A R S S+ 0 0 94 -2,-0.4 48,-2.7 54,-0.1 2,-0.4 0.451 79.8 83.1 -85.3 -4.1 3.3 -13.4 20.9 5 19 A V E -A 51 0A 40 75,-0.4 75,-2.6 46,-0.2 2,-0.3 -0.853 60.8-171.0-107.5 134.4 2.0 -10.3 19.0 6 20 A V E -AB 50 79A 1 44,-2.6 44,-2.1 -2,-0.4 2,-0.4 -0.874 20.4-131.6-119.5 156.2 0.9 -10.2 15.4 7 21 A Y E -AB 49 78A 87 71,-3.3 71,-1.5 -2,-0.3 2,-0.4 -0.866 19.9-167.6 -96.2 136.2 -0.1 -7.5 12.9 8 22 A L E +AB 48 77A 0 40,-2.5 40,-2.2 -2,-0.4 69,-0.2 -0.960 20.2 163.7-127.2 115.0 -3.4 -8.2 11.0 9 23 A G E + B 0 76A 0 67,-3.4 67,-2.1 -2,-0.4 38,-0.2 -0.683 43.1 49.5-127.6 177.6 -3.9 -5.9 8.0 10 24 A S S S+ 0 0 34 36,-0.4 37,-0.2 1,-0.2 -1,-0.2 0.764 70.8 163.0 61.1 28.8 -5.9 -5.4 4.8 11 25 A I - 0 0 4 35,-2.3 -1,-0.2 -3,-0.2 60,-0.1 -0.616 49.3-101.1 -76.5 130.7 -9.1 -6.2 6.9 12 26 A P > - 0 0 10 0, 0.0 3,-2.0 0, 0.0 34,-0.1 -0.266 29.3-126.8 -49.2 132.9 -12.3 -5.1 5.2 13 27 A Y T 3 S+ 0 0 174 1,-0.3 31,-0.4 32,-0.1 33,-0.2 0.746 106.7 60.5 -58.1 -27.3 -13.4 -1.8 6.8 14 28 A D T 3 S+ 0 0 128 29,-0.1 2,-0.3 2,-0.1 -1,-0.3 0.575 78.4 109.8 -79.3 -7.9 -16.9 -3.1 7.5 15 29 A Q < - 0 0 25 -3,-2.0 31,-0.1 1,-0.1 2,-0.1 -0.521 63.3-140.7 -69.3 130.3 -15.5 -5.9 9.8 16 30 A T > - 0 0 74 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.380 20.1-109.5 -89.7 168.3 -16.3 -5.3 13.4 17 31 A E H > S+ 0 0 92 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.879 119.9 51.7 -62.2 -44.1 -14.2 -5.8 16.5 18 32 A E H > S+ 0 0 64 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.924 110.2 50.9 -57.8 -47.1 -16.3 -8.7 17.7 19 33 A Q H > S+ 0 0 89 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.897 111.8 45.0 -57.7 -45.5 -15.9 -10.3 14.2 20 34 A I H X S+ 0 0 0 -4,-2.2 4,-2.4 2,-0.2 5,-0.2 0.869 110.4 54.7 -72.4 -36.0 -12.1 -9.9 14.3 21 35 A L H X S+ 0 0 71 -4,-2.5 4,-2.6 2,-0.2 -1,-0.2 0.927 109.2 49.3 -56.2 -47.0 -11.9 -11.2 17.8 22 36 A D H X S+ 0 0 109 -4,-2.2 4,-1.5 2,-0.2 -2,-0.2 0.915 110.3 49.3 -59.7 -48.0 -13.8 -14.3 16.7 23 37 A L H X S+ 0 0 27 -4,-2.0 4,-1.0 1,-0.2 3,-0.5 0.952 115.8 42.6 -57.4 -52.2 -11.5 -14.9 13.7 24 38 A C H >X S+ 0 0 0 -4,-2.4 4,-1.9 1,-0.2 3,-0.5 0.876 109.8 58.1 -64.2 -37.2 -8.3 -14.6 15.8 25 39 A S H 3< S+ 0 0 58 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.794 98.5 61.1 -62.4 -29.7 -9.9 -16.7 18.6 26 40 A N H 3< S+ 0 0 143 -4,-1.5 -1,-0.2 -3,-0.5 -2,-0.2 0.871 106.6 45.5 -63.3 -38.4 -10.4 -19.5 16.1 27 41 A V H << S- 0 0 33 -4,-1.0 -2,-0.2 -3,-0.5 -1,-0.2 0.912 129.8 -43.8 -70.6 -47.4 -6.6 -19.7 15.6 28 42 A G S < S- 0 0 9 -4,-1.9 2,-0.3 32,-0.0 -1,-0.2 -0.987 78.0 -47.0-173.8 176.2 -5.7 -19.6 19.3 29 43 A P - 0 0 46 0, 0.0 24,-2.5 0, 0.0 2,-0.4 -0.426 52.4-149.9 -65.9 119.3 -6.2 -18.0 22.7 30 44 A V E -C 52 0A 34 -2,-0.3 22,-0.3 22,-0.2 3,-0.1 -0.751 20.9-179.5 -95.2 129.1 -6.3 -14.2 22.5 31 45 A I E S- 0 0 93 20,-2.9 2,-0.3 -2,-0.4 21,-0.2 0.864 74.6 -0.9 -88.2 -46.4 -5.1 -12.1 25.4 32 46 A N E -C 51 0A 81 19,-1.6 19,-3.0 2,-0.0 2,-0.5 -0.995 54.5-158.9-149.3 140.0 -5.7 -8.7 23.8 33 47 A L E -C 50 0A 20 -2,-0.3 2,-0.7 17,-0.2 17,-0.2 -0.987 8.8-168.2-118.4 120.1 -7.0 -7.3 20.5 34 48 A K E -C 49 0A 123 15,-3.6 15,-2.5 -2,-0.5 2,-0.4 -0.880 8.0-169.5-110.9 96.8 -6.1 -3.8 19.5 35 49 A M E -C 48 0A 15 -2,-0.7 2,-0.3 13,-0.2 13,-0.2 -0.743 18.3-129.6 -89.5 136.4 -8.2 -2.6 16.6 36 50 A M E - 0 0 53 11,-2.3 9,-2.7 -2,-0.4 10,-0.5 -0.668 28.4-176.4 -93.5 139.0 -7.1 0.6 15.0 37 51 A F E -C 44 0A 89 -2,-0.3 7,-0.2 7,-0.3 6,-0.1 -0.903 35.4-116.6-133.0 154.6 -9.6 3.5 14.3 38 52 A D E >> -C 43 0A 46 5,-3.3 4,-2.5 -2,-0.3 5,-0.6 -0.862 31.9-153.2 -83.7 114.8 -9.9 6.9 12.7 39 53 A P T 45S+ 0 0 117 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.780 86.3 56.9 -69.6 -27.4 -10.7 9.0 15.8 40 54 A Q T 45S+ 0 0 184 1,-0.2 -2,-0.0 3,-0.1 -3,-0.0 0.880 124.6 21.0 -69.4 -41.2 -12.6 11.7 14.0 41 55 A T T 45S- 0 0 69 -3,-0.2 -1,-0.2 2,-0.1 3,-0.1 0.617 97.1-127.9 -99.5 -19.8 -15.1 9.4 12.3 42 56 A G T <5 + 0 0 50 -4,-2.5 2,-0.2 1,-0.3 -2,-0.0 0.572 60.8 146.2 79.0 11.1 -14.8 6.4 14.6 43 57 A R E < - C 0 38A 178 -5,-0.6 -5,-3.3 1,-0.1 -1,-0.3 -0.546 54.5-102.4 -89.3 146.3 -14.2 4.2 11.6 44 58 A S E - C 0 37A 18 -31,-0.4 -7,-0.3 -7,-0.2 -1,-0.1 -0.342 14.8-149.7 -61.5 138.2 -12.0 1.2 11.3 45 59 A K E - 0 0 103 -9,-2.7 -35,-0.2 2,-0.3 -8,-0.2 0.450 45.7-111.8 -85.8 -3.1 -8.6 1.6 9.7 46 60 A G E S+ 0 0 4 -10,-0.5 -35,-2.3 1,-0.2 -36,-0.4 0.755 85.0 84.1 77.9 25.9 -8.7 -2.0 8.5 47 61 A Y E - 0 0 72 -11,-0.4 -11,-2.3 -38,-0.2 -2,-0.3 -0.989 48.1-179.2-155.0 161.7 -5.9 -3.3 10.7 48 62 A A E -AC 8 35A 0 -40,-2.2 -40,-2.5 -2,-0.3 2,-0.4 -0.950 24.2-127.8-152.3 161.8 -5.3 -4.6 14.2 49 63 A F E -AC 7 34A 54 -15,-2.5 -15,-3.6 -2,-0.3 2,-0.5 -0.993 25.7-164.8-119.8 130.4 -2.7 -5.9 16.6 50 64 A I E -AC 6 33A 0 -44,-2.1 -44,-2.6 -2,-0.4 2,-0.6 -0.968 9.7-158.1-122.3 123.7 -3.4 -9.2 18.4 51 65 A E E -AC 5 32A 56 -19,-3.0 -20,-2.9 -2,-0.5 -19,-1.6 -0.897 17.0-162.4 -96.2 122.2 -1.6 -10.5 21.5 52 66 A F E - C 0 30A 0 -48,-2.7 -22,-0.2 -2,-0.6 -48,-0.0 -0.602 30.3-110.1-100.0 166.1 -1.9 -14.3 21.8 53 67 A R S S+ 0 0 151 -24,-2.5 2,-0.3 -2,-0.2 -23,-0.1 0.813 92.6 3.7 -66.2 -33.2 -1.3 -16.4 24.9 54 68 A D S > S- 0 0 59 -25,-0.3 4,-1.4 -50,-0.1 3,-0.1 -0.889 76.6 -97.2-150.2 175.1 1.8 -18.0 23.5 55 69 A L H > S+ 0 0 85 -2,-0.3 4,-2.1 1,-0.2 5,-0.2 0.785 115.4 58.3 -70.9 -32.3 4.3 -18.3 20.6 56 70 A E H > S+ 0 0 162 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.897 107.0 48.2 -63.1 -40.9 2.6 -21.3 19.0 57 71 A S H > S+ 0 0 13 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.869 110.7 49.2 -70.0 -39.8 -0.7 -19.4 18.6 58 72 A S H X S+ 0 0 0 -4,-1.4 4,-2.3 2,-0.2 -1,-0.2 0.922 112.1 49.4 -64.9 -43.4 0.9 -16.3 17.1 59 73 A A H X S+ 0 0 27 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.858 109.8 51.6 -61.3 -38.6 2.8 -18.4 14.7 60 74 A S H X S+ 0 0 37 -4,-1.8 4,-2.5 2,-0.2 5,-0.3 0.870 107.5 53.6 -66.3 -37.4 -0.4 -20.2 13.8 61 75 A A H X>S+ 0 0 0 -4,-2.0 4,-2.9 2,-0.2 5,-0.5 0.944 111.7 44.2 -60.3 -49.3 -2.1 -16.8 13.2 62 76 A V H X5S+ 0 0 24 -4,-2.3 4,-1.2 1,-0.2 -2,-0.2 0.913 116.0 47.6 -63.3 -43.4 0.7 -15.8 10.8 63 77 A R H <5S+ 0 0 204 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.903 124.7 28.9 -64.7 -41.3 0.6 -19.2 9.0 64 78 A N H <5S+ 0 0 92 -4,-2.5 -2,-0.2 -5,-0.2 -3,-0.2 0.776 122.8 43.8 -96.2 -29.4 -3.2 -19.4 8.6 65 79 A L H ><5S+ 0 0 5 -4,-2.9 3,-1.6 -5,-0.3 2,-0.6 0.731 86.0 96.5 -93.2 -22.4 -4.3 -15.7 8.4 66 80 A N T 3< -D 73 0B 21 3,-2.1 3,-2.0 -2,-0.7 2,-0.2 -0.992 65.1 -37.4-123.3 122.6 -12.1 -12.4 4.4 71 85 A G T 3 S- 0 0 59 -2,-0.5 -60,-0.0 1,-0.2 -2,-0.0 -0.472 125.2 -28.0 59.0-129.3 -14.9 -10.7 2.6 72 86 A S T 3 S+ 0 0 109 -2,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.197 124.7 81.7 -98.1 13.8 -13.5 -9.5 -0.7 73 87 A R E < S-D 70 0B 117 -3,-2.0 -3,-2.1 -5,-0.0 2,-0.5 -0.790 71.4-130.0-122.4 160.5 -9.9 -9.1 0.6 74 88 A F E -D 69 0B 115 -2,-0.3 -5,-0.2 -5,-0.2 -6,-0.1 -0.959 34.8-130.8-106.4 121.6 -6.8 -11.1 1.3 75 89 A L - 0 0 0 -7,-3.1 -8,-3.6 -2,-0.5 2,-0.5 -0.350 8.7-144.5 -75.2 150.6 -5.5 -10.5 4.8 76 90 A K E +B 9 0A 94 -67,-2.1 -67,-3.4 -10,-0.2 2,-0.4 -0.971 22.7 176.8-113.0 128.6 -1.9 -9.8 5.6 77 91 A C E +B 8 0A 10 -2,-0.5 2,-0.3 -69,-0.2 -69,-0.2 -0.999 9.2 145.9-136.5 133.8 -0.5 -11.2 8.9 78 92 A G E -B 7 0A 24 -71,-1.5 -71,-3.3 -2,-0.4 2,-0.1 -0.945 50.0 -75.8-153.5 172.4 3.0 -11.0 10.4 79 93 A Y E -B 6 0A 128 -2,-0.3 2,-0.4 -73,-0.3 -73,-0.3 -0.437 46.3-159.2 -75.4 150.2 4.8 -10.8 13.7 80 94 A S + 0 0 21 -75,-2.6 -75,-0.4 -30,-0.1 2,-0.3 -0.982 20.0 159.6-135.5 138.7 4.9 -7.5 15.5 81 95 A S - 0 0 110 -2,-0.4 2,-0.3 -78,-0.1 -78,-0.0 -0.929 13.5-168.9-143.2 170.8 7.0 -5.8 18.1 82 96 A N - 0 0 121 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.987 15.8-133.7-155.8 156.8 7.6 -2.2 19.1 83 97 A S - 0 0 104 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.565 15.5-146.8 -99.1 172.2 9.8 0.1 21.2 84 98 A D + 0 0 147 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.919 22.7 166.4-141.3 119.4 8.6 2.8 23.5 85 99 A I - 0 0 159 -2,-0.3 2,-0.2 0, 0.0 -2,-0.0 -0.991 23.9-137.9-131.1 143.3 10.7 6.0 24.0 86 100 A S 0 0 118 -2,-0.4 -2,-0.0 1,-0.2 0, 0.0 -0.542 360.0 360.0 -94.3 163.9 9.6 9.3 25.6 87 101 A G 0 0 129 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.390 360.0 360.0 -99.1 360.0 10.4 12.8 24.4