==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-JAN-10 2X1B . COMPND 2 MOLECULE: MRNA 3'-END-PROCESSING PROTEIN RNA15; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR C.PANCEVAC,D.C.GOLDSTONE,A.RAMOS,I.A.TAYLOR . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5366.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 62.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 25.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 22 25.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 15 A G 0 0 119 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-149.5 11.2 0.5 17.1 2 16 A P - 0 0 113 0, 0.0 2,-0.3 0, 0.0 53,-0.0 -0.262 360.0-162.8 -67.0 157.0 10.8 -2.7 19.1 3 17 A S - 0 0 22 52,-0.1 78,-0.1 1,-0.1 51,-0.1 -0.999 31.8-156.9-145.1 141.9 9.7 -5.9 17.3 4 18 A R S S+ 0 0 95 -2,-0.3 48,-2.9 54,-0.1 2,-0.4 0.499 78.6 86.7 -83.5 -9.0 8.3 -9.3 18.0 5 19 A V E +A 51 0A 0 75,-0.4 75,-2.7 46,-0.2 2,-0.3 -0.800 53.1 176.6-104.3 135.5 9.8 -10.7 14.8 6 20 A V E -AB 50 79A 0 44,-2.7 44,-2.6 -2,-0.4 2,-0.4 -0.916 23.7-133.3-125.7 154.8 13.3 -12.1 14.2 7 21 A Y E -AB 49 78A 95 71,-2.4 71,-1.4 -2,-0.3 2,-0.4 -0.844 14.7-159.4 -98.2 149.2 15.1 -13.6 11.4 8 22 A L E +AB 48 77A 0 40,-3.0 40,-2.4 -2,-0.4 3,-0.2 -0.975 20.3 175.4-129.5 115.1 17.1 -16.7 12.0 9 23 A G E + B 0 76A 10 67,-2.8 67,-2.1 -2,-0.4 38,-0.2 -0.666 50.0 42.6-119.7 172.2 19.8 -17.4 9.4 10 24 A S S S+ 0 0 27 36,-0.4 37,-0.2 1,-0.2 -1,-0.2 0.771 72.7 165.7 59.6 32.0 22.6 -19.9 8.7 11 25 A I - 0 0 0 35,-2.5 -1,-0.2 -3,-0.2 63,-0.1 -0.567 49.1 -97.1 -75.6 133.8 20.3 -22.7 9.8 12 26 A P > - 0 0 13 0, 0.0 3,-1.9 0, 0.0 34,-0.1 -0.273 32.3-126.5 -48.7 136.5 21.5 -26.2 8.8 13 27 A Y T 3 S+ 0 0 148 1,-0.3 31,-0.5 32,-0.1 33,-0.2 0.719 106.8 57.9 -67.7 -18.7 19.8 -27.1 5.5 14 28 A D T 3 S+ 0 0 132 29,-0.1 -1,-0.3 32,-0.1 2,-0.2 0.514 79.1 114.2 -88.6 -3.2 18.5 -30.4 7.0 15 29 A Q < - 0 0 28 -3,-1.9 2,-0.1 1,-0.1 31,-0.1 -0.477 58.6-141.2 -71.2 134.4 16.7 -28.7 9.9 16 30 A T > - 0 0 69 -2,-0.2 4,-2.2 1,-0.1 5,-0.2 -0.452 22.8-111.3 -89.9 164.5 12.9 -29.1 9.8 17 31 A E H > S+ 0 0 94 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.874 120.2 55.9 -61.7 -37.5 10.3 -26.5 10.8 18 32 A E H > S+ 0 0 144 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.893 107.6 48.1 -59.1 -43.2 9.4 -28.7 13.8 19 33 A Q H > S+ 0 0 83 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.905 112.8 46.9 -66.1 -44.5 13.1 -28.6 15.0 20 34 A I H X S+ 0 0 0 -4,-2.2 4,-2.7 2,-0.2 5,-0.2 0.888 109.9 53.8 -68.2 -36.9 13.3 -24.8 14.6 21 35 A L H X S+ 0 0 72 -4,-2.5 4,-2.6 2,-0.2 -1,-0.2 0.906 109.4 49.2 -62.2 -40.9 9.9 -24.4 16.3 22 36 A D H X S+ 0 0 104 -4,-2.0 4,-1.7 2,-0.2 -2,-0.2 0.949 111.0 49.5 -61.6 -44.1 11.3 -26.4 19.3 23 37 A L H X S+ 0 0 28 -4,-2.4 4,-1.0 1,-0.2 -2,-0.2 0.943 116.4 41.9 -60.6 -48.1 14.5 -24.3 19.4 24 38 A C H X S+ 0 0 0 -4,-2.7 4,-2.5 1,-0.2 3,-0.3 0.868 108.9 57.5 -69.1 -37.7 12.5 -21.1 19.4 25 39 A S H < S+ 0 0 55 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.822 99.5 60.6 -62.7 -32.3 9.8 -22.3 21.8 26 40 A N H < S+ 0 0 146 -4,-1.7 -1,-0.2 -3,-0.2 -2,-0.2 0.903 107.5 45.4 -58.6 -41.6 12.6 -22.9 24.3 27 41 A V H < S- 0 0 33 -4,-1.0 -2,-0.2 -3,-0.3 -1,-0.2 0.951 133.1 -58.6 -68.3 -48.1 13.4 -19.2 24.1 28 42 A G S < S- 0 0 7 -4,-2.5 -1,-0.3 32,-0.0 2,-0.1 -0.980 74.0 -39.6 178.3 177.5 9.8 -18.3 24.4 29 43 A P - 0 0 62 0, 0.0 24,-2.9 0, 0.0 25,-0.4 -0.301 51.4-151.1 -61.9 128.3 6.2 -18.5 23.0 30 44 A V E +C 52 0A 29 22,-0.3 22,-0.3 23,-0.1 3,-0.1 -0.814 19.7 179.3-101.9 134.8 6.0 -18.4 19.2 31 45 A I E S+ 0 0 76 20,-3.1 2,-0.3 -2,-0.4 21,-0.2 0.494 72.4 9.9-113.2 -9.0 3.0 -17.1 17.4 32 46 A N E -C 51 0A 77 19,-1.6 19,-2.6 2,-0.0 -1,-0.4 -0.946 57.0-173.6-163.7 151.6 4.2 -17.5 13.8 33 47 A L E -C 50 0A 25 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.955 0.8-175.3-149.6 126.3 7.0 -19.2 12.0 34 48 A K E -C 49 0A 86 15,-3.0 15,-2.3 -2,-0.3 2,-0.3 -0.923 7.0-166.4-127.5 105.2 7.9 -19.0 8.3 35 49 A M E -C 48 0A 5 -2,-0.5 2,-0.4 13,-0.2 13,-0.2 -0.721 23.6-125.5 -85.6 138.9 10.7 -21.2 7.1 36 50 A M E + 0 0 39 11,-2.5 9,-3.1 -2,-0.3 10,-0.4 -0.744 32.8 178.7 -92.8 131.7 12.0 -20.3 3.6 37 51 A F E -C 44 0A 90 -2,-0.4 7,-0.2 7,-0.3 6,-0.1 -0.909 38.4 -99.3-128.7 151.8 12.0 -23.1 1.0 38 52 A D > - 0 0 57 5,-3.0 4,-2.0 -2,-0.3 5,-0.1 -0.612 34.3-136.1 -68.5 128.7 13.0 -23.4 -2.7 39 53 A P T 4 S+ 0 0 117 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.715 97.0 33.9 -62.3 -25.2 9.6 -23.3 -4.6 40 54 A Q T 4 S+ 0 0 183 3,-0.1 -2,-0.0 1,-0.0 -3,-0.0 0.885 128.9 28.7 -95.4 -52.2 10.6 -26.1 -6.9 41 55 A T T 4 S- 0 0 74 2,-0.1 3,-0.1 1,-0.0 -1,-0.0 0.649 89.7-136.2 -84.8 -19.9 12.8 -28.5 -5.0 42 56 A G < + 0 0 44 -4,-2.0 3,-0.1 1,-0.2 -1,-0.0 0.489 51.8 151.8 73.7 2.1 11.2 -27.8 -1.6 43 57 A R - 0 0 180 -6,-0.1 -5,-3.0 1,-0.1 -1,-0.2 -0.352 53.8-101.3 -66.5 142.2 14.8 -27.7 -0.2 44 58 A S E - C 0 37A 17 -31,-0.5 -7,-0.3 -7,-0.2 -1,-0.1 -0.379 17.4-148.7 -61.4 141.4 15.3 -25.4 2.9 45 59 A K E - 0 0 87 -9,-3.1 -35,-0.2 2,-0.3 -8,-0.2 0.409 43.6-114.3 -87.6 -0.9 16.9 -22.1 2.1 46 60 A G E S+ 0 0 4 -10,-0.4 -35,-2.5 1,-0.2 -36,-0.4 0.712 82.7 84.1 77.7 22.4 18.5 -22.2 5.6 47 61 A Y E - 0 0 81 -11,-0.4 -11,-2.5 -38,-0.2 2,-0.3 -0.992 48.3-177.2-151.9 161.3 16.6 -19.3 7.1 48 62 A A E -AC 8 35A 0 -40,-2.4 -40,-3.0 -2,-0.3 2,-0.4 -0.965 23.5-130.1-149.9 157.7 13.4 -18.4 8.8 49 63 A F E -AC 7 34A 24 -15,-2.3 -15,-3.0 -2,-0.3 2,-0.4 -0.967 26.6-170.3-110.0 134.2 11.3 -15.6 10.2 50 64 A I E -AC 6 33A 0 -44,-2.6 -44,-2.7 -2,-0.4 2,-0.5 -0.994 10.6-157.5-128.8 128.6 9.8 -16.2 13.7 51 65 A E E -AC 5 32A 26 -19,-2.6 -20,-3.1 -2,-0.4 -19,-1.6 -0.935 14.2-155.3-103.7 122.6 7.3 -14.0 15.5 52 66 A F E - C 0 30A 0 -48,-2.9 -22,-0.3 -2,-0.5 -48,-0.0 -0.586 25.1-119.0 -91.8 158.4 7.2 -14.3 19.3 53 67 A R S S+ 0 0 158 -24,-2.9 2,-0.3 -2,-0.2 -23,-0.1 0.838 92.8 21.3 -65.0 -32.4 4.2 -13.6 21.4 54 68 A D S > S- 0 0 66 -25,-0.4 4,-1.7 -50,-0.1 3,-0.2 -0.898 75.4-112.0-141.3 166.1 6.2 -10.8 23.3 55 69 A L H > S+ 0 0 85 -2,-0.3 4,-1.9 1,-0.2 5,-0.2 0.785 111.7 58.1 -66.2 -32.7 9.1 -8.4 23.1 56 70 A E H > S+ 0 0 166 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.915 107.1 49.5 -63.9 -42.0 11.1 -10.1 25.9 57 71 A S H > S+ 0 0 12 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.886 110.1 47.6 -66.3 -44.4 11.1 -13.4 23.9 58 72 A S H X S+ 0 0 1 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.907 113.7 49.5 -63.9 -39.4 12.3 -11.9 20.6 59 73 A A H X S+ 0 0 37 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.904 110.0 50.7 -63.3 -42.4 15.0 -10.0 22.4 60 74 A S H X S+ 0 0 24 -4,-2.3 4,-2.9 2,-0.2 5,-0.3 0.859 108.1 53.7 -61.2 -36.6 16.0 -13.2 24.2 61 75 A A H X>S+ 0 0 0 -4,-2.0 4,-2.7 2,-0.2 5,-0.6 0.923 108.7 47.9 -65.1 -42.9 16.1 -14.9 20.7 62 76 A V H X5S+ 0 0 33 -4,-2.1 4,-1.1 1,-0.2 -2,-0.2 0.935 117.5 43.2 -62.2 -44.1 18.5 -12.3 19.4 63 77 A R H <5S+ 0 0 178 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.897 125.2 31.1 -66.3 -46.1 20.7 -12.6 22.5 64 78 A N H <5S+ 0 0 76 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.2 0.794 123.0 42.3 -90.9 -33.3 20.7 -16.4 22.8 65 79 A L H ><5S+ 0 0 5 -4,-2.7 3,-1.9 -5,-0.3 2,-0.5 0.729 85.6 95.4 -92.9 -22.4 20.4 -17.6 19.2 66 80 A N T 3< -D 73 0B 24 3,-2.0 3,-2.0 -2,-0.7 2,-0.2 -0.961 65.4 -51.7-117.9 107.5 23.5 -25.8 15.7 71 85 A G T 3 S- 0 0 73 -2,-0.6 0, 0.0 1,-0.3 0, 0.0 -0.437 121.2 -21.6 57.0-125.9 25.4 -28.8 14.3 72 86 A S T 3 S+ 0 0 109 -2,-0.2 -1,-0.3 -3,-0.1 2,-0.2 0.406 124.2 85.5 -88.9 1.6 28.3 -27.5 12.2 73 87 A R E < -D 70 0B 68 -3,-2.0 -3,-2.0 -63,-0.0 2,-0.6 -0.674 67.9-138.7-109.2 155.2 26.7 -24.0 11.7 74 88 A F E -D 69 0B 117 -2,-0.2 -5,-0.2 -5,-0.2 -6,-0.1 -0.968 29.7-134.0-111.4 116.8 26.6 -20.8 13.6 75 89 A L - 0 0 2 -7,-2.9 -8,-2.9 -2,-0.6 2,-0.4 -0.274 8.6-147.7 -68.6 153.0 23.2 -19.2 13.6 76 90 A K E +B 9 0A 110 -67,-2.1 -67,-2.8 -10,-0.2 2,-0.4 -0.968 20.3 178.0-115.4 136.7 22.6 -15.6 12.9 77 91 A C E +B 8 0A 3 -2,-0.4 2,-0.3 -69,-0.2 -69,-0.2 -0.975 11.6 140.7-144.9 128.4 19.6 -13.9 14.6 78 92 A G E -B 7 0A 7 -71,-1.4 -71,-2.4 -2,-0.4 2,-0.1 -0.923 52.2 -64.4-151.7 179.1 18.4 -10.3 14.6 79 93 A Y E +B 6 0A 125 -2,-0.3 -73,-0.3 -73,-0.2 2,-0.2 -0.434 48.3 170.6 -76.4 143.8 15.3 -8.2 14.4 80 94 A S - 0 0 13 -75,-2.7 -75,-0.4 -30,-0.1 2,-0.3 -0.498 22.9-115.1-128.4-161.8 13.0 -8.4 11.5 81 95 A S > - 0 0 45 -2,-0.2 4,-1.7 -77,-0.1 3,-0.3 -0.861 27.9 -98.9-138.8 170.8 9.5 -7.0 10.8 82 96 A N H > S+ 0 0 93 -2,-0.3 4,-1.9 1,-0.2 5,-0.2 0.845 120.5 60.5 -56.7 -37.4 5.8 -7.9 10.1 83 97 A S H > S+ 0 0 84 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.879 103.7 49.4 -59.0 -40.9 6.6 -7.2 6.4 84 98 A D H >4 S+ 0 0 71 -3,-0.3 3,-0.6 1,-0.2 -2,-0.2 0.946 114.1 42.0 -66.5 -49.6 9.2 -9.9 6.4 85 99 A I H 3< S+ 0 0 11 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.777 114.4 52.6 -73.1 -24.3 7.2 -12.7 8.0 86 100 A S H 3< 0 0 93 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.608 360.0 360.0 -83.4 -14.8 4.0 -11.7 6.0 87 101 A G << 0 0 88 -4,-0.9 -1,-0.1 -3,-0.6 -2,-0.1 0.095 360.0 360.0 95.5 360.0 6.0 -11.9 2.6