==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/RNA 06-JAN-10 2X1F . COMPND 2 MOLECULE: MRNA 3'-END-PROCESSING PROTEIN RNA15; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR C.PANCEVAC,D.C.GOLDSTONE,A.RAMOS,I.A.TAYLOR . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5532.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 61 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 23.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 22.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 16 A P 0 0 131 0, 0.0 2,-0.3 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0 171.0 17.6 4.2 30.6 2 17 A S - 0 0 8 52,-0.1 80,-0.1 51,-0.1 81,-0.1 -0.946 360.0-116.7-158.3 161.3 14.0 5.0 31.6 3 18 A R S S+ 0 0 89 79,-0.4 48,-2.8 -2,-0.3 2,-0.5 0.613 99.6 79.9 -78.1 -14.1 10.7 5.5 29.9 4 19 A V E -A 50 0A 0 77,-0.4 75,-2.5 46,-0.3 2,-0.3 -0.810 63.6-174.0 -96.6 131.4 10.9 9.0 31.4 5 20 A V E -AB 49 78A 0 44,-2.6 44,-2.4 -2,-0.5 2,-0.4 -0.895 20.9-131.8-119.8 151.5 13.0 11.7 29.8 6 21 A Y E -AB 48 77A 65 71,-3.0 71,-1.9 -2,-0.3 2,-0.4 -0.878 19.3-165.6 -95.2 135.5 13.9 15.3 30.8 7 22 A L E +AB 47 76A 0 40,-3.1 40,-2.2 -2,-0.4 2,-0.2 -0.992 16.8 173.2-124.2 121.9 13.5 18.0 28.2 8 23 A G E +AB 46 75A 1 67,-3.0 67,-2.1 -2,-0.4 38,-0.2 -0.741 47.2 46.9-129.2 172.4 15.1 21.3 28.8 9 24 A S S S+ 0 0 28 36,-0.6 37,-0.2 -2,-0.2 -1,-0.2 0.783 71.6 164.4 65.3 30.8 15.9 24.7 27.3 10 25 A I - 0 0 2 35,-2.5 -1,-0.2 -3,-0.2 60,-0.1 -0.621 48.2-104.1 -78.8 130.2 12.3 24.9 26.1 11 26 A P > - 0 0 18 0, 0.0 3,-1.6 0, 0.0 34,-0.2 -0.333 33.9-124.4 -53.2 134.1 11.1 28.3 25.0 12 27 A Y T 3 S+ 0 0 126 1,-0.3 31,-3.4 32,-0.1 33,-0.2 0.686 103.7 55.0 -61.5 -27.2 8.8 29.6 27.9 13 28 A D T 3 S+ 0 0 93 29,-0.2 -1,-0.3 2,-0.1 2,-0.1 0.630 77.3 114.8 -84.4 -13.9 5.7 30.3 25.9 14 29 A Q < - 0 0 32 -3,-1.6 29,-0.2 1,-0.1 31,-0.2 -0.362 63.0-137.6 -57.6 131.2 5.5 26.7 24.4 15 30 A T > - 0 0 49 1,-0.1 4,-2.0 27,-0.1 5,-0.2 -0.364 20.2-107.3 -88.4 169.1 2.4 25.1 25.8 16 31 A E H > S+ 0 0 73 1,-0.2 4,-2.7 2,-0.2 5,-0.1 0.869 122.7 54.6 -60.6 -36.1 1.9 21.6 27.2 17 32 A E H > S+ 0 0 118 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.897 107.4 49.0 -65.9 -41.2 -0.1 20.8 24.0 18 33 A Q H > S+ 0 0 83 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.865 113.0 46.6 -66.7 -38.9 2.8 22.0 21.8 19 34 A I H X S+ 0 0 0 -4,-2.0 4,-2.8 2,-0.2 -2,-0.2 0.895 112.0 51.4 -70.9 -40.2 5.3 19.9 23.7 20 35 A L H X S+ 0 0 72 -4,-2.7 4,-2.0 2,-0.2 -2,-0.2 0.932 110.2 49.2 -57.9 -47.2 3.0 16.9 23.6 21 36 A D H X S+ 0 0 106 -4,-2.5 4,-0.6 2,-0.2 -2,-0.2 0.909 112.2 48.8 -59.9 -44.1 2.7 17.4 19.8 22 37 A L H >< S+ 0 0 11 -4,-2.1 3,-1.5 1,-0.2 4,-0.3 0.960 112.7 46.5 -56.9 -54.1 6.5 17.6 19.5 23 38 A C H >X S+ 0 0 0 -4,-2.8 3,-1.8 1,-0.3 4,-1.8 0.769 99.1 70.3 -65.3 -26.3 7.0 14.4 21.6 24 39 A S H 3< S+ 0 0 62 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.735 87.2 66.1 -61.8 -26.3 4.3 12.6 19.6 25 40 A N T << S+ 0 0 133 -3,-1.5 -1,-0.3 -4,-0.6 -2,-0.2 0.698 106.8 42.8 -66.3 -21.3 6.7 12.5 16.6 26 41 A V T <4 S- 0 0 29 -3,-1.8 -2,-0.2 1,-0.4 -1,-0.2 0.885 128.9 -64.8 -86.2 -52.5 8.8 10.2 18.8 27 42 A G S < S- 0 0 8 -4,-1.8 -1,-0.4 32,-0.0 -2,-0.0 -0.955 70.4 -40.4 175.8 172.8 6.1 8.0 20.2 28 43 A P - 0 0 91 0, 0.0 24,-1.5 0, 0.0 2,-0.5 -0.273 51.5-144.3 -55.4 136.8 3.0 7.8 22.4 29 44 A V E +C 51 0A 35 22,-0.2 22,-0.2 1,-0.1 3,-0.1 -0.917 21.1 177.8-109.1 125.6 3.2 9.8 25.6 30 45 A I E S+ 0 0 87 20,-2.6 2,-0.3 -2,-0.5 21,-0.2 0.741 72.1 15.1 -97.9 -26.0 1.5 8.4 28.8 31 46 A N E -C 50 0A 74 19,-1.5 19,-2.7 2,-0.0 2,-0.3 -0.997 58.3-174.9-146.9 148.5 2.5 11.2 31.2 32 47 A L E -C 49 0A 33 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.929 4.8-168.0-148.8 120.3 3.8 14.8 30.9 33 48 A K E +C 48 0A 72 15,-2.8 15,-2.2 -2,-0.3 2,-0.3 -0.950 20.0 150.6-115.5 118.7 4.9 17.1 33.7 34 49 A M - 0 0 17 -2,-0.5 2,-0.4 13,-0.2 13,-0.1 -0.856 32.9-131.9-132.7 170.6 5.5 20.8 33.2 35 50 A M - 0 0 105 11,-0.5 9,-1.5 -2,-0.3 2,-0.3 -0.996 19.7-175.7-130.7 138.0 5.2 23.9 35.4 36 51 A F B -D 43 0B 67 -2,-0.4 7,-0.2 7,-0.2 6,-0.0 -0.964 33.2-109.2-131.9 144.0 3.6 27.2 34.5 37 52 A D > - 0 0 49 5,-2.5 4,-2.6 -2,-0.3 5,-0.2 -0.588 27.5-137.6 -69.0 129.3 3.3 30.5 36.3 38 53 A P T 4 S+ 0 0 114 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.738 99.5 43.4 -65.7 -22.3 -0.3 30.8 37.5 39 54 A Q T 4 S+ 0 0 168 3,-0.1 -2,-0.0 1,-0.1 -3,-0.0 0.803 126.8 25.6 -90.2 -35.2 -0.5 34.6 36.5 40 55 A T T 4 S- 0 0 90 2,-0.2 3,-0.1 -3,-0.0 -1,-0.1 0.707 86.2-134.6-104.4 -26.5 1.3 34.5 33.1 41 56 A G < + 0 0 49 -4,-2.6 2,-0.3 1,-0.3 0, 0.0 0.519 58.7 140.5 78.4 5.2 0.8 30.9 31.8 42 57 A R - 0 0 119 -5,-0.2 -5,-2.5 1,-0.1 -1,-0.3 -0.622 48.5-128.9 -82.0 138.5 4.5 30.9 30.9 43 58 A S B -D 36 0B 4 -31,-3.4 -7,-0.2 -2,-0.3 -1,-0.1 -0.219 14.6-117.1 -80.5 175.1 6.3 27.6 31.5 44 59 A K - 0 0 114 -9,-1.5 -8,-0.1 2,-0.3 -32,-0.1 0.273 56.9 -98.4 -98.4 9.4 9.6 27.2 33.4 45 60 A G S S+ 0 0 8 -10,-0.2 -35,-2.5 1,-0.2 -36,-0.6 0.551 90.6 71.6 94.8 7.5 11.6 25.9 30.4 46 61 A Y E -A 8 0A 27 -11,-0.2 -11,-0.5 -38,-0.2 2,-0.3 -0.956 48.5-169.1-149.1 166.8 11.4 22.1 31.0 47 62 A A E -A 7 0A 0 -40,-2.2 -40,-3.1 -2,-0.3 2,-0.5 -0.976 18.2-140.2-153.0 151.3 9.2 19.0 30.9 48 63 A F E -AC 6 33A 4 -15,-2.2 -15,-2.8 -2,-0.3 2,-0.5 -0.985 25.8-167.4-110.0 130.4 9.4 15.4 32.0 49 64 A I E -AC 5 32A 0 -44,-2.4 -44,-2.6 -2,-0.5 2,-0.6 -0.982 10.6-156.5-125.7 123.0 7.8 13.1 29.5 50 65 A E E -AC 4 31A 11 -19,-2.7 -20,-2.6 -2,-0.5 -19,-1.5 -0.892 15.4-159.5 -99.3 117.7 7.0 9.4 30.1 51 66 A F E - C 0 29A 0 -48,-2.8 -22,-0.2 -2,-0.6 -48,-0.1 -0.490 27.0-115.8 -89.4 166.6 6.8 7.3 26.9 52 67 A R S S+ 0 0 45 -24,-1.5 2,-0.3 -2,-0.2 -23,-0.1 0.769 93.0 14.8 -73.8 -27.7 5.0 4.0 26.5 53 68 A D S > S- 0 0 57 -25,-0.3 4,-1.8 -50,-0.1 3,-0.2 -0.950 74.0-111.2-148.2 166.2 8.2 2.1 25.8 54 69 A L H > S+ 0 0 95 -2,-0.3 4,-2.4 1,-0.2 5,-0.2 0.751 112.1 62.1 -72.1 -27.5 11.9 2.2 26.0 55 70 A E H > S+ 0 0 143 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.923 107.6 46.3 -60.7 -41.5 12.4 2.4 22.2 56 71 A S H > S+ 0 0 13 -3,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.918 111.3 48.8 -70.0 -45.0 10.5 5.7 22.3 57 72 A S H X S+ 0 0 0 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.888 111.1 51.7 -65.0 -36.3 12.4 7.2 25.2 58 73 A A H X S+ 0 0 24 -4,-2.4 4,-2.4 2,-0.2 -1,-0.2 0.927 110.3 49.1 -60.4 -43.4 15.7 6.2 23.6 59 74 A S H X S+ 0 0 35 -4,-2.0 4,-3.0 2,-0.2 5,-0.3 0.858 108.5 54.0 -64.6 -35.3 14.5 7.9 20.4 60 75 A A H X>S+ 0 0 0 -4,-2.3 4,-2.7 2,-0.2 5,-0.7 0.949 109.7 46.2 -64.3 -47.3 13.5 11.0 22.5 61 76 A V H X5S+ 0 0 33 -4,-2.3 4,-0.6 1,-0.2 15,-0.2 0.909 119.1 42.0 -63.1 -40.5 17.0 11.3 24.0 62 77 A R H <5S+ 0 0 185 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.921 127.0 28.9 -70.0 -43.1 18.6 10.8 20.6 63 78 A N H <5S+ 0 0 95 -4,-3.0 -3,-0.2 -5,-0.2 -2,-0.2 0.624 118.9 48.4-104.6 -16.7 16.3 13.0 18.5 64 79 A L H ><5S+ 0 0 4 -4,-2.7 3,-1.9 -5,-0.3 2,-0.4 0.719 89.9 91.9 -91.4 -26.3 15.0 15.7 20.9 65 80 A N T 3< -E 72 0C 22 3,-2.6 3,-1.7 -2,-0.7 2,-0.3 -0.956 65.9 -45.4-118.3 109.5 12.6 24.8 18.7 70 85 A G T 3 S- 0 0 60 -2,-0.6 -60,-0.0 1,-0.2 -2,-0.0 -0.566 123.7 -24.7 64.3-125.5 12.3 28.4 17.8 71 86 A S T 3 S+ 0 0 107 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.2 0.345 124.1 87.0 -95.2 3.2 15.6 30.1 18.6 72 87 A R E < -E 69 0C 113 -3,-1.7 -3,-2.6 -63,-0.0 2,-0.6 -0.747 68.6-136.7-111.8 152.1 16.6 27.5 21.2 73 88 A F E -E 68 0C 117 -2,-0.3 -5,-0.2 -5,-0.2 -6,-0.1 -0.936 31.3-132.9-106.0 116.4 18.4 24.1 21.1 74 89 A L - 0 0 2 -7,-2.9 -8,-3.0 -2,-0.6 2,-0.4 -0.266 9.3-144.2 -69.7 155.0 16.6 21.6 23.3 75 90 A K E -B 8 0A 124 -67,-2.1 -67,-3.0 -10,-0.2 2,-0.4 -0.974 19.6-178.0-116.9 134.7 18.4 19.4 25.8 76 91 A C E +B 7 0A 11 -2,-0.4 2,-0.3 -69,-0.2 -69,-0.2 -0.995 10.6 151.0-140.3 130.9 17.1 15.8 26.4 77 92 A G E -B 6 0A 26 -71,-1.9 -71,-3.0 -2,-0.4 2,-0.2 -0.948 48.6 -80.3-146.6 165.3 18.3 13.2 28.7 78 93 A Y E -B 5 0A 79 -2,-0.3 -73,-0.3 -73,-0.2 2,-0.2 -0.487 44.7-121.1 -67.1 139.1 17.0 10.2 30.6 79 94 A S - 0 0 6 -75,-2.5 -75,-0.2 2,-0.2 -1,-0.1 -0.504 12.5-131.2 -69.1 149.7 15.3 11.0 33.9 80 95 A S S S+ 0 0 99 -2,-0.2 2,-0.4 7,-0.1 -1,-0.1 0.579 89.7 84.1 -74.9 -10.9 17.0 9.3 36.9 81 96 A N - 0 0 35 1,-0.1 -77,-0.4 -77,-0.1 -2,-0.2 -0.771 69.2-152.3 -96.9 137.8 13.4 8.2 37.7 82 97 A S S S+ 0 0 82 -2,-0.4 -79,-0.4 -80,-0.1 2,-0.3 0.649 85.3 31.5 -78.9 -19.9 11.7 5.1 36.3 83 98 A D S > S- 0 0 62 -80,-0.1 3,-1.1 -81,-0.1 4,-0.2 -0.974 85.2-111.0-140.3 163.9 8.3 6.8 36.7 84 99 A I G > S+ 0 0 18 -2,-0.3 3,-1.3 1,-0.2 4,-0.3 0.672 97.9 80.0 -64.9 -24.2 6.8 10.3 36.6 85 100 A S G 3 S+ 0 0 79 1,-0.2 3,-0.3 2,-0.1 -1,-0.2 0.792 96.5 40.6 -58.1 -35.1 6.0 10.5 40.3 86 101 A G G X> S+ 0 0 9 -3,-1.1 4,-1.3 1,-0.2 3,-1.0 0.385 80.5 103.4 -98.3 3.1 9.5 11.4 41.6 87 102 A V H <> S+ 0 0 1 -3,-1.3 4,-2.6 1,-0.3 5,-0.2 0.776 72.8 62.3 -65.2 -28.8 10.7 13.8 38.9 88 103 A S H 3> S+ 0 0 61 -3,-0.3 4,-1.8 -4,-0.3 -1,-0.3 0.860 102.6 52.9 -61.8 -34.9 10.2 17.0 41.0 89 104 A L H <4 S+ 0 0 119 -3,-1.0 -1,-0.2 2,-0.2 -2,-0.2 0.955 110.9 46.9 -62.9 -50.9 12.8 15.6 43.5 90 105 A E H >< S+ 0 0 24 -4,-1.3 3,-1.6 1,-0.2 -2,-0.2 0.925 111.4 49.8 -55.0 -50.6 15.3 15.1 40.7 91 106 A H H >< S+ 0 0 32 -4,-2.6 3,-1.8 1,-0.3 -1,-0.2 0.849 101.2 61.8 -66.5 -32.5 14.8 18.5 39.1 92 107 A H T 3< S+ 0 0 146 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.318 96.8 61.3 -81.0 10.8 15.2 20.5 42.4 93 108 A H T < 0 0 168 -3,-1.6 -1,-0.3 -4,-0.1 -2,-0.2 0.333 360.0 360.0-105.0 0.2 18.8 19.1 42.6 94 109 A H < 0 0 184 -3,-1.8 0, 0.0 -4,-0.2 0, 0.0 -0.858 360.0 360.0-103.7 360.0 19.7 20.8 39.3