==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 26-APR-05 1X2L . COMPND 2 MOLECULE: HOMEOBOX PROTEIN CUX-2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.O.KAMATARI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7458.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 44.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 124 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-150.0 15.8 12.9 14.5 2 2 A S + 0 0 137 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.844 360.0 146.0 65.5 111.1 15.3 15.8 11.9 3 3 A S - 0 0 136 1,-0.0 2,-0.3 2,-0.0 0, 0.0 0.365 44.1-118.3-131.8 -88.2 18.2 16.4 9.6 4 4 A G - 0 0 68 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.932 11.4-127.5 160.9-177.2 17.2 17.5 6.0 5 5 A S + 0 0 129 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.865 22.7 165.8-160.4 131.8 17.4 16.5 2.3 6 6 A S + 0 0 131 -2,-0.3 2,-0.0 1,-0.0 -2,-0.0 -0.846 36.4 107.3-146.9 108.6 18.6 18.3 -0.8 7 7 A G - 0 0 76 -2,-0.3 -1,-0.0 0, 0.0 2,-0.0 -0.290 44.5-160.7 178.3 83.1 19.2 16.2 -4.0 8 8 A A + 0 0 113 1,-0.0 -2,-0.0 -2,-0.0 0, 0.0 -0.285 37.3 122.9 -63.3 161.2 16.7 16.5 -6.8 9 9 A G - 0 0 64 2,-0.0 -1,-0.0 -2,-0.0 0, 0.0 0.369 37.9-158.9 140.5 71.8 16.6 13.7 -9.4 10 10 A P + 0 0 137 0, 0.0 2,-0.3 0, 0.0 -2,-0.0 -0.240 24.8 168.1 -59.4 160.5 13.3 11.8 -10.2 11 11 A G - 0 0 77 2,-0.1 2,-0.1 0, 0.0 -2,-0.0 -0.983 43.6-121.5-171.5 166.8 13.8 8.4 -11.8 12 12 A A + 0 0 106 -2,-0.3 2,-0.3 2,-0.1 0, 0.0 -0.514 60.2 130.1-123.6 56.0 12.1 5.1 -12.8 13 13 A E - 0 0 165 -2,-0.1 2,-0.5 0, 0.0 -2,-0.1 -0.747 61.5-121.5 -94.1 154.6 14.2 2.5 -10.9 14 14 A E + 0 0 103 -2,-0.3 2,-0.2 3,-0.0 -2,-0.1 -0.871 48.1 173.4 -76.4 132.5 13.1 -0.3 -8.7 15 15 A E - 0 0 116 -2,-0.5 2,-0.4 0, 0.0 0, 0.0 -0.677 39.2 -73.4-129.9 179.4 14.8 0.6 -5.4 16 16 A Q - 0 0 160 -2,-0.2 2,-0.4 2,-0.0 0, 0.0 -0.719 48.8-165.6 -79.4 138.4 14.8 -0.8 -1.8 17 17 A L - 0 0 14 -2,-0.4 2,-0.9 -3,-0.0 45,-0.3 -0.976 26.9-116.7-128.5 134.4 11.6 0.1 0.1 18 18 A D > - 0 0 128 -2,-0.4 4,-2.8 1,-0.2 3,-0.2 -0.596 28.6-168.4 -72.9 104.2 11.0 -0.2 3.8 19 19 A T H > S+ 0 0 10 -2,-0.9 4,-2.8 1,-0.2 -1,-0.2 0.865 84.8 52.4 -66.8 -38.2 8.2 -2.8 3.8 20 20 A A H > S+ 0 0 62 39,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.826 112.5 47.5 -68.1 -29.1 7.4 -2.2 7.5 21 21 A E H > S+ 0 0 98 2,-0.2 4,-3.1 -3,-0.2 5,-0.3 0.925 113.2 46.1 -76.1 -49.3 7.1 1.6 6.8 22 22 A I H X S+ 0 0 3 -4,-2.8 4,-2.5 2,-0.2 5,-0.2 0.925 114.7 49.3 -57.0 -47.0 4.9 1.0 3.7 23 23 A A H X S+ 0 0 0 -4,-2.8 4,-2.0 -5,-0.2 -2,-0.2 0.953 116.2 42.6 -56.5 -53.9 2.8 -1.4 5.7 24 24 A F H X S+ 0 0 97 -4,-2.2 4,-2.2 2,-0.2 3,-0.4 0.981 114.7 48.6 -51.9 -67.8 2.6 1.2 8.6 25 25 A Q H X S+ 0 0 87 -4,-3.1 4,-2.6 1,-0.3 -1,-0.2 0.764 110.1 52.6 -51.7 -37.6 1.9 4.2 6.3 26 26 A V H X S+ 0 0 0 -4,-2.5 4,-2.7 -5,-0.3 -1,-0.3 0.959 109.5 48.1 -62.9 -52.4 -0.8 2.3 4.3 27 27 A K H X S+ 0 0 73 -4,-2.0 4,-2.9 -3,-0.4 -2,-0.2 0.923 113.0 50.6 -55.1 -42.6 -2.7 1.4 7.6 28 28 A E H X S+ 0 0 89 -4,-2.2 4,-2.7 1,-0.2 -2,-0.2 0.939 112.3 44.6 -57.7 -56.3 -2.3 5.1 8.6 29 29 A Q H X S+ 0 0 26 -4,-2.6 4,-0.7 2,-0.2 -1,-0.2 0.824 113.5 50.6 -62.2 -35.1 -3.7 6.5 5.3 30 30 A L H ><>S+ 0 0 5 -4,-2.7 5,-2.9 2,-0.2 3,-1.5 0.981 114.5 44.0 -65.4 -51.4 -6.6 3.9 5.3 31 31 A L H ><5S+ 0 0 120 -4,-2.9 3,-1.4 3,-0.3 -2,-0.2 0.856 100.8 70.9 -58.9 -35.6 -7.4 4.9 8.9 32 32 A K H 3<5S+ 0 0 100 -4,-2.7 -1,-0.3 1,-0.3 -2,-0.2 0.755 120.2 17.7 -49.9 -33.3 -7.0 8.6 7.9 33 33 A H T <<5S- 0 0 35 -3,-1.5 -1,-0.3 -4,-0.7 -2,-0.2 0.061 113.1-110.7-128.2 16.3 -10.3 8.2 5.9 34 34 A N T < 5 + 0 0 133 -3,-1.4 -3,-0.3 -4,-0.2 -4,-0.1 0.781 60.2 164.0 60.2 36.0 -11.5 4.9 7.7 35 35 A I < - 0 0 15 -5,-2.9 2,-0.3 -6,-0.2 -1,-0.2 -0.430 33.9-118.6 -83.3 157.7 -11.0 2.8 4.5 36 36 A G > - 0 0 28 -2,-0.1 4,-1.7 1,-0.1 3,-0.2 -0.783 11.9-126.3-101.4 144.8 -10.8 -1.1 4.6 37 37 A Q H > S+ 0 0 80 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.750 103.9 62.2 -56.0 -35.2 -7.9 -3.3 3.6 38 38 A R H > S+ 0 0 163 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.972 105.8 43.2 -59.7 -59.0 -9.9 -5.5 1.1 39 39 A V H > S+ 0 0 5 -3,-0.2 4,-2.7 2,-0.2 5,-0.4 0.912 116.6 49.0 -56.4 -44.4 -10.8 -2.6 -1.2 40 40 A F H X>S+ 0 0 0 -4,-1.7 5,-1.4 1,-0.2 4,-1.3 0.955 116.7 41.1 -57.7 -49.7 -7.2 -1.3 -1.0 41 41 A G H <>S+ 0 0 0 -4,-2.8 6,-2.6 3,-0.2 5,-1.7 0.757 115.8 51.5 -72.9 -25.0 -5.8 -4.7 -1.7 42 42 A H H <5S+ 0 0 107 -4,-2.6 -1,-0.2 4,-0.2 -2,-0.2 0.887 125.8 21.8 -78.0 -43.2 -8.4 -5.5 -4.4 43 43 A Y H <5S+ 0 0 133 -4,-2.7 -3,-0.2 -5,-0.2 -2,-0.2 0.954 132.3 32.7 -87.6 -68.2 -7.8 -2.2 -6.3 44 44 A V T <5S+ 0 0 27 -4,-1.3 -3,-0.2 -5,-0.4 -4,-0.1 0.873 136.7 23.8 -62.8 -42.4 -4.3 -0.8 -5.6 45 45 A L T - 0 0 83 -2,-0.2 4,-2.1 1,-0.1 5,-0.3 -0.446 38.4-109.9 -68.6 159.5 -7.1 -11.0 -2.1 49 49 A Q H > S+ 0 0 117 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.931 122.1 49.7 -48.4 -55.1 -8.0 -9.4 1.3 50 50 A G H > S+ 0 0 40 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.840 108.2 55.9 -61.5 -34.1 -6.2 -12.3 3.1 51 51 A S H >> S+ 0 0 59 2,-0.2 4,-1.5 1,-0.2 3,-0.6 0.984 112.3 37.2 -62.5 -64.6 -3.2 -11.8 0.8 52 52 A V H 3X S+ 0 0 0 -4,-2.1 4,-2.6 1,-0.2 5,-0.3 0.876 110.9 62.9 -60.2 -36.3 -2.5 -8.1 1.6 53 53 A S H 3X S+ 0 0 51 -4,-2.4 4,-2.0 -5,-0.3 -1,-0.2 0.890 103.8 48.3 -53.7 -42.3 -3.5 -8.6 5.2 54 54 A E H > - 0 0 42 0, 0.0 4,-1.6 0, 0.0 3,-1.2 -0.102 36.0-126.3 -55.3 143.8 12.4 -7.8 4.3 62 62 A W G >4 S+ 0 0 19 1,-0.3 3,-0.8 -45,-0.3 7,-0.1 0.952 115.7 53.5 -55.1 -48.8 12.6 -6.2 0.8 63 63 A R G 34 S+ 0 0 215 1,-0.2 -1,-0.3 0, 0.0 -3,-0.0 0.728 108.4 52.1 -54.7 -26.3 15.7 -8.3 0.2 64 64 A K G <4 S+ 0 0 146 -3,-1.2 -1,-0.2 2,-0.1 -2,-0.2 0.792 94.3 86.1 -78.7 -34.6 13.6 -11.4 1.2 65 65 A L << - 0 0 25 -4,-1.6 2,-0.1 -3,-0.8 3,-0.0 -0.419 69.2-139.3 -77.7 148.0 10.7 -10.7 -1.2 66 66 A T >> - 0 0 95 -2,-0.1 4,-2.6 1,-0.1 3,-1.3 -0.295 41.3 -89.8 -82.5 178.2 10.6 -11.9 -4.9 67 67 A V H 3> S+ 0 0 99 1,-0.3 4,-2.4 2,-0.2 3,-0.2 0.972 136.3 51.7 -55.8 -47.6 9.2 -9.7 -7.7 68 68 A K H 34 S+ 0 0 150 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.582 112.0 47.8 -66.2 -8.7 5.9 -11.3 -7.0 69 69 A G H <> S+ 0 0 15 -3,-1.3 4,-0.6 2,-0.1 -1,-0.2 0.748 113.7 44.7 -90.4 -39.1 6.5 -10.2 -3.3 70 70 A K H X S+ 0 0 33 -4,-2.6 4,-2.8 1,-0.2 5,-0.2 0.728 91.2 88.5 -78.6 -22.1 7.6 -6.7 -4.2 71 71 A E H X S+ 0 0 66 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.873 94.6 37.8 -44.9 -58.1 4.6 -6.3 -6.6 72 72 A P H > S+ 0 0 4 0, 0.0 4,-2.8 0, 0.0 -1,-0.2 0.941 115.4 53.3 -61.6 -49.6 2.2 -5.0 -3.8 73 73 A F H X S+ 0 0 2 -4,-0.6 4,-3.0 2,-0.2 5,-0.2 0.849 107.5 51.3 -60.1 -35.7 4.9 -2.9 -2.0 74 74 A I H X S+ 0 0 59 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.969 113.1 45.5 -59.9 -54.4 5.8 -1.1 -5.3 75 75 A K H X S+ 0 0 83 -4,-1.8 4,-2.0 -5,-0.2 -2,-0.2 0.873 116.1 47.5 -56.4 -42.6 2.1 -0.3 -5.8 76 76 A M H X S+ 0 0 1 -4,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.921 111.7 46.7 -67.5 -49.4 1.7 0.8 -2.1 77 77 A K H X S+ 0 0 76 -4,-3.0 4,-0.6 2,-0.2 -2,-0.2 0.914 113.8 50.1 -64.1 -36.1 4.8 3.0 -1.9 78 78 A Q H >< S+ 0 0 129 -4,-2.5 3,-0.6 2,-0.2 4,-0.2 0.879 108.7 52.6 -63.5 -42.8 3.7 4.6 -5.3 79 79 A F H >< S+ 0 0 4 -4,-2.0 3,-1.9 1,-0.2 6,-0.4 0.964 109.1 49.8 -54.1 -51.6 0.3 5.1 -3.7 80 80 A L H 3< S+ 0 0 36 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.598 94.5 73.4 -68.5 -13.7 2.0 6.8 -0.7 81 81 A S T << S+ 0 0 76 -4,-0.6 -1,-0.3 -3,-0.6 2,-0.3 0.562 108.8 31.3 -72.4 -10.0 4.0 9.1 -3.1 82 82 A D X - 0 0 83 -3,-1.9 3,-1.9 -4,-0.2 4,-0.4 -0.843 67.1-151.1-154.5 116.0 0.7 11.0 -3.7 83 83 A E T >> S+ 0 0 89 -2,-0.3 4,-1.7 1,-0.3 3,-0.9 0.731 91.6 75.2 -56.4 -26.8 -2.2 11.6 -1.2 84 84 A Q H 3> S+ 0 0 122 1,-0.2 4,-2.7 2,-0.2 -1,-0.3 0.820 85.0 67.6 -60.2 -25.0 -4.8 11.8 -4.1 85 85 A N H <> S+ 0 0 60 -3,-1.9 4,-1.3 -6,-0.4 -1,-0.2 0.905 104.5 40.2 -59.5 -45.4 -4.4 8.0 -4.4 86 86 A V H <> S+ 0 0 0 -3,-0.9 4,-1.2 -4,-0.4 -1,-0.2 0.874 112.1 57.0 -71.4 -36.1 -6.1 7.5 -0.9 87 87 A L H >X S+ 0 0 61 -4,-1.7 4,-0.7 1,-0.2 3,-0.7 0.929 108.2 46.8 -63.1 -42.4 -8.6 10.2 -1.6 88 88 A A H >X S+ 0 0 58 -4,-2.7 4,-1.0 1,-0.2 3,-0.5 0.842 106.6 59.2 -67.2 -32.6 -9.8 8.4 -4.7 89 89 A L H 3X S+ 0 0 12 -4,-1.3 4,-1.8 1,-0.2 -1,-0.2 0.763 92.3 68.4 -66.3 -25.8 -9.9 5.1 -2.7 90 90 A R H