==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 26-APR-05 1X2N . COMPND 2 MOLECULE: HOMEOBOX PROTEIN PKNOX1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.O.KAMATARI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 49.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 128 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 90.8 10.3 -22.1 5.3 2 2 A S + 0 0 138 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.304 360.0 178.1 -59.7 137.4 9.5 -18.5 4.4 3 3 A S + 0 0 103 1,-0.1 49,-0.1 2,-0.1 -1,-0.0 -0.981 30.4 112.9-143.0 153.3 11.9 -16.0 5.9 4 4 A G + 0 0 30 -2,-0.3 -1,-0.1 48,-0.1 -2,-0.0 0.114 57.4 86.4 177.1 -42.9 12.4 -12.2 5.8 5 5 A S S S+ 0 0 86 3,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.890 70.5 95.4 -44.8 -47.9 11.9 -10.7 9.2 6 6 A S S S+ 0 0 87 2,-0.0 -3,-0.0 0, 0.0 0, 0.0 -0.233 87.7 14.4 -50.3 123.0 15.6 -11.4 10.0 7 7 A G S S- 0 0 64 1,-0.1 2,-0.5 2,-0.0 0, 0.0 0.519 72.0-135.5 80.7 131.7 17.5 -8.2 9.3 8 8 A K - 0 0 178 4,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.942 22.9-118.3-126.8 110.9 16.1 -4.8 8.7 9 9 A N - 0 0 127 -2,-0.5 3,-0.1 1,-0.2 -2,-0.0 -0.219 20.0-140.4 -47.4 105.8 17.4 -2.6 5.8 10 10 A K S S+ 0 0 177 1,-0.2 2,-0.3 -2,-0.2 -1,-0.2 0.773 93.2 24.2 -40.5 -29.6 18.8 0.4 7.7 11 11 A R S S+ 0 0 204 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.937 76.6 164.6-145.5 118.3 17.3 2.3 4.8 12 12 A G - 0 0 60 -2,-0.3 2,-0.3 -3,-0.1 -4,-0.0 -0.975 9.6-176.5-136.1 149.4 14.4 1.2 2.5 13 13 A V - 0 0 141 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.996 10.8-150.8-146.9 138.7 12.0 2.9 0.1 14 14 A L - 0 0 46 -2,-0.3 -2,-0.0 1,-0.1 2,-0.0 -0.770 28.3-101.3-109.3 154.4 9.1 1.7 -2.0 15 15 A P >> - 0 0 75 0, 0.0 4,-2.2 0, 0.0 3,-0.7 -0.279 31.2-111.9 -69.8 156.2 7.8 3.0 -5.3 16 16 A K H 3> S+ 0 0 148 1,-0.3 4,-2.1 2,-0.2 5,-0.1 0.853 117.5 61.9 -56.1 -36.2 4.8 5.3 -5.6 17 17 A H H 3> S+ 0 0 92 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.895 107.5 42.9 -57.6 -42.2 2.9 2.4 -7.3 18 18 A A H <> S+ 0 0 0 -3,-0.7 4,-1.8 1,-0.2 5,-0.2 0.929 113.9 49.1 -70.4 -47.2 3.2 0.4 -4.1 19 19 A T H X S+ 0 0 15 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.771 105.7 62.6 -63.7 -25.7 2.4 3.2 -1.7 20 20 A N H X S+ 0 0 76 -4,-2.1 4,-2.8 -5,-0.2 5,-0.2 0.985 105.7 40.5 -63.4 -60.7 -0.6 4.0 -3.8 21 21 A V H X S+ 0 0 35 -4,-1.4 4,-2.4 1,-0.2 5,-0.2 0.961 119.3 45.2 -52.5 -59.7 -2.4 0.7 -3.3 22 22 A M H X S+ 0 0 0 -4,-1.8 4,-3.2 1,-0.2 5,-0.2 0.923 113.1 52.1 -50.9 -50.4 -1.6 0.5 0.4 23 23 A R H X S+ 0 0 121 -4,-2.4 4,-2.8 -5,-0.2 5,-0.3 0.960 108.1 49.4 -51.4 -60.5 -2.5 4.2 0.9 24 24 A S H X S+ 0 0 70 -4,-2.8 4,-2.3 1,-0.2 -1,-0.2 0.906 114.3 46.7 -46.0 -50.6 -5.9 3.8 -0.7 25 25 A W H X S+ 0 0 16 -4,-2.4 4,-1.9 -5,-0.2 -1,-0.2 0.964 110.2 51.4 -58.0 -56.1 -6.6 0.8 1.5 26 26 A L H < S+ 0 0 7 -4,-3.2 3,-0.4 1,-0.2 -1,-0.2 0.905 111.9 47.9 -47.8 -48.7 -5.4 2.4 4.7 27 27 A F H >< S+ 0 0 126 -4,-2.8 3,-1.6 1,-0.2 -1,-0.2 0.904 107.1 56.0 -60.8 -42.8 -7.6 5.4 4.0 28 28 A Q H 3< S+ 0 0 147 -4,-2.3 -1,-0.2 -5,-0.3 -2,-0.2 0.822 122.8 27.9 -59.4 -31.8 -10.6 3.2 3.3 29 29 A H T >< S+ 0 0 72 -4,-1.9 3,-0.8 -3,-0.4 -1,-0.3 -0.101 77.4 139.6-120.9 33.1 -10.1 1.6 6.7 30 30 A I T < S+ 0 0 91 -3,-1.6 -1,-0.1 1,-0.3 -2,-0.1 0.866 72.7 57.5 -43.3 -44.2 -8.5 4.6 8.5 31 31 A G T 3 S+ 0 0 75 1,-0.3 -1,-0.3 -4,-0.2 -2,-0.1 0.917 125.9 15.9 -55.3 -47.2 -10.6 3.8 11.5 32 32 A H S < S- 0 0 116 -3,-0.8 2,-2.1 -6,-0.1 -1,-0.3 -0.704 73.1-166.6-132.9 81.9 -9.2 0.3 11.7 33 33 A P + 0 0 10 0, 0.0 -3,-0.1 0, 0.0 29,-0.1 -0.445 38.9 134.5 -69.9 79.8 -6.0 -0.1 9.7 34 34 A Y - 0 0 137 -2,-2.1 2,-0.1 -5,-0.1 -2,-0.1 -0.908 46.4-143.0-137.1 107.8 -5.7 -3.9 9.7 35 35 A P - 0 0 23 0, 0.0 2,-0.2 0, 0.0 -9,-0.0 -0.437 19.9-127.6 -69.8 137.3 -5.0 -5.8 6.5 36 36 A T > - 0 0 79 -2,-0.1 4,-2.1 1,-0.1 5,-0.4 -0.597 28.2-103.6 -87.3 147.2 -6.8 -9.2 6.1 37 37 A E H > S+ 0 0 170 1,-0.3 4,-0.8 -2,-0.2 -1,-0.1 0.793 127.7 45.1 -34.5 -37.1 -4.9 -12.4 5.4 38 38 A D H >> S+ 0 0 88 2,-0.2 4,-3.0 1,-0.2 3,-1.2 0.954 105.0 57.7 -75.1 -53.4 -6.2 -11.9 1.9 39 39 A E H 3> S+ 0 0 51 1,-0.3 4,-2.7 2,-0.2 5,-0.4 0.879 106.6 51.3 -43.7 -46.3 -5.4 -8.2 1.6 40 40 A K H 3X S+ 0 0 49 -4,-2.1 4,-1.2 3,-0.2 -1,-0.3 0.844 114.4 44.3 -62.0 -34.2 -1.8 -9.0 2.2 41 41 A K H X S+ 0 0 112 -4,-3.0 4,-1.8 2,-0.2 3,-1.3 0.972 118.6 48.1 -61.9 -56.8 -3.8 -9.6 -3.1 43 43 A I H 3X>S+ 0 0 5 -4,-2.7 4,-3.3 -5,-0.3 5,-0.6 0.935 101.7 63.6 -49.2 -55.1 -2.0 -6.3 -2.4 44 44 A A H 3X>S+ 0 0 11 -4,-1.2 5,-1.6 -5,-0.4 4,-0.8 0.818 108.2 45.0 -39.2 -38.6 1.4 -7.9 -2.4 45 45 A A H <<5S+ 0 0 72 -3,-1.3 -1,-0.2 -4,-0.9 -2,-0.2 0.971 111.3 48.2 -72.6 -57.1 0.7 -8.7 -6.1 46 46 A Q H <5S+ 0 0 131 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.852 127.1 30.9 -52.1 -37.0 -0.7 -5.3 -7.1 47 47 A T H <5S- 0 0 4 -4,-3.3 -1,-0.3 -5,-0.2 -2,-0.2 0.573 105.0-130.4 -97.3 -13.3 2.3 -3.7 -5.4 48 48 A N T << + 0 0 141 -4,-0.8 -3,-0.2 -5,-0.6 2,-0.2 0.804 61.7 137.5 67.1 29.4 4.6 -6.6 -6.1 49 49 A L < - 0 0 15 -5,-1.6 2,-0.3 -6,-0.3 -1,-0.2 -0.662 56.4-107.3-105.4 162.2 5.6 -6.7 -2.5 50 50 A T >> - 0 0 82 -2,-0.2 4,-1.5 1,-0.1 3,-1.0 -0.661 33.9-107.1 -90.4 143.8 6.2 -9.6 -0.1 51 51 A L H 3> S+ 0 0 77 -2,-0.3 4,-1.3 1,-0.3 5,-0.1 0.783 124.7 54.6 -34.4 -35.3 3.7 -10.4 2.7 52 52 A L H 3> S+ 0 0 67 2,-0.2 4,-3.2 3,-0.1 -1,-0.3 0.951 108.3 45.3 -67.6 -50.9 6.5 -9.0 4.9 53 53 A Q H <> S+ 0 0 67 -3,-1.0 4,-2.9 1,-0.2 5,-0.4 0.976 110.5 51.7 -56.5 -61.5 6.8 -5.7 3.1 54 54 A V H X S+ 0 0 0 -4,-1.5 4,-1.5 1,-0.2 -1,-0.2 0.838 115.5 45.6 -44.8 -38.1 3.1 -5.0 2.9 55 55 A N H X S+ 0 0 41 -4,-1.3 4,-3.3 -5,-0.4 5,-0.2 0.974 112.1 47.5 -71.5 -57.6 3.0 -5.6 6.6 56 56 A N H X S+ 0 0 84 -4,-3.2 4,-2.6 1,-0.2 5,-0.3 0.930 112.0 51.1 -48.9 -53.8 6.0 -3.5 7.6 57 57 A W H X S+ 0 0 55 -4,-2.9 4,-2.8 1,-0.2 -1,-0.2 0.919 114.4 44.0 -51.0 -49.6 4.8 -0.6 5.5 58 58 A F H X S+ 0 0 5 -4,-1.5 4,-3.0 -5,-0.4 5,-0.5 0.968 110.0 54.0 -61.3 -55.9 1.4 -0.8 7.2 59 59 A I H X S+ 0 0 72 -4,-3.3 4,-1.1 1,-0.2 -1,-0.2 0.889 116.0 40.3 -45.3 -47.4 2.7 -1.2 10.7 60 60 A N H X S+ 0 0 106 -4,-2.6 4,-1.4 -5,-0.2 -1,-0.2 0.908 117.7 48.8 -70.2 -43.2 4.8 1.9 10.3 61 61 A A H >X S+ 0 0 11 -4,-2.8 4,-1.7 -5,-0.3 3,-1.3 0.988 107.8 50.9 -59.9 -63.7 2.1 3.8 8.4 62 62 A R H 3X S+ 0 0 73 -4,-3.0 4,-2.7 1,-0.3 -1,-0.2 0.825 107.3 58.6 -43.8 -36.3 -0.7 3.1 10.9 63 63 A R H 3X S+ 0 0 161 -4,-1.1 4,-2.5 -5,-0.5 5,-0.3 0.910 104.1 49.6 -62.2 -43.9 1.7 4.3 13.5 64 64 A R H