==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 13-MAY-05 1X43 . COMPND 2 MOLECULE: SH3 DOMAIN GRB2-LIKE PROTEIN B1; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR X.-R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6689.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 24.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 111 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-178.7 14.3 -3.3 19.7 2 2 A S + 0 0 134 1,-0.1 3,-0.1 2,-0.1 0, 0.0 0.907 360.0 146.8 60.9 43.3 10.6 -4.0 20.4 3 3 A S - 0 0 78 1,-0.2 2,-0.2 59,-0.0 -1,-0.1 -0.228 68.3 -25.9-103.0 42.3 10.2 -5.7 17.0 4 4 A G - 0 0 60 2,-0.0 2,-0.3 1,-0.0 -1,-0.2 -0.512 55.4-135.7 132.2 159.4 7.6 -8.2 18.1 5 5 A S - 0 0 120 -2,-0.2 2,-0.2 -3,-0.1 -1,-0.0 -0.898 16.0-133.7-154.6 120.0 6.3 -10.0 21.2 6 6 A S + 0 0 124 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.504 28.1 169.1 -74.6 138.1 5.3 -13.7 21.6 7 7 A G - 0 0 71 1,-0.4 2,-0.2 -2,-0.2 -1,-0.1 0.696 51.6 -13.6-110.9 -84.7 2.0 -14.3 23.4 8 8 A L - 0 0 127 2,-0.1 2,-1.0 0, 0.0 -1,-0.4 -0.707 64.1-103.7-120.6 172.8 0.6 -17.8 23.3 9 9 A N + 0 0 166 -2,-0.2 2,-0.3 -3,-0.1 -3,-0.0 -0.734 67.1 126.9-101.0 85.8 1.2 -21.0 21.3 10 10 A D - 0 0 108 -2,-1.0 2,-0.7 2,-0.0 -2,-0.1 -1.000 46.3-149.3-142.9 140.6 -1.7 -21.2 18.9 11 11 A L + 0 0 177 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.878 40.1 135.4-114.0 100.8 -1.9 -21.6 15.1 12 12 A K - 0 0 171 -2,-0.7 2,-1.4 2,-0.0 -2,-0.0 -0.833 32.8-166.0-149.3 106.0 -4.9 -19.9 13.6 13 13 A E + 0 0 200 -2,-0.3 2,-0.6 2,-0.0 -2,-0.0 -0.599 34.0 146.6 -92.6 75.2 -4.8 -17.8 10.4 14 14 A S + 0 0 99 -2,-1.4 2,-0.3 2,-0.0 -2,-0.0 -0.866 19.2 123.2-116.2 98.1 -8.1 -16.0 10.6 15 15 A S - 0 0 92 -2,-0.6 2,-0.4 2,-0.1 -2,-0.0 -0.988 41.6-157.1-155.0 144.2 -8.1 -12.5 9.2 16 16 A N + 0 0 172 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.747 35.3 149.1-126.4 84.1 -9.9 -10.5 6.5 17 17 A N - 0 0 73 -2,-0.4 2,-0.2 28,-0.1 28,-0.2 -0.540 41.2-108.4-108.1 175.7 -7.8 -7.6 5.4 18 18 A R E -A 44 0A 167 26,-2.8 26,-2.6 -2,-0.2 2,-0.4 -0.618 21.6-142.4-103.0 163.9 -7.4 -5.7 2.1 19 19 A K E +A 43 0A 127 24,-0.2 55,-0.9 -2,-0.2 2,-0.3 -0.989 20.8 169.6-130.7 136.2 -4.6 -5.7 -0.5 20 20 A A E -AB 42 73A 0 22,-1.5 22,-1.5 -2,-0.4 2,-0.4 -0.994 30.0-121.8-145.0 149.5 -3.2 -2.9 -2.6 21 21 A R E -AB 41 72A 131 51,-1.0 51,-1.8 -2,-0.3 20,-0.3 -0.782 29.9-121.9 -95.3 131.8 -0.2 -2.3 -4.8 22 22 A V E - B 0 71A 1 18,-2.9 17,-1.7 -2,-0.4 18,-0.3 -0.482 16.9-166.0 -72.4 137.4 2.1 0.6 -4.0 23 23 A L S S+ 0 0 56 47,-3.1 2,-0.3 1,-0.3 -1,-0.1 0.707 74.9 13.9 -93.9 -25.2 2.6 3.2 -6.7 24 24 A Y S S- 0 0 145 46,-0.6 2,-0.5 13,-0.2 -1,-0.3 -0.994 86.0 -98.1-152.5 145.4 5.7 4.8 -5.2 25 25 A D - 0 0 108 -2,-0.3 12,-0.3 -3,-0.1 2,-0.2 -0.500 44.2-158.4 -66.9 114.5 8.2 4.0 -2.4 26 26 A Y - 0 0 39 -2,-0.5 10,-1.5 10,-0.3 2,-0.6 -0.645 8.9-144.1 -96.0 153.4 7.1 5.8 0.7 27 27 A D - 0 0 132 -2,-0.2 8,-0.2 8,-0.2 7,-0.0 -0.907 17.8-133.6-121.8 103.6 9.3 6.7 3.7 28 28 A A - 0 0 21 -2,-0.6 7,-0.1 1,-0.1 3,-0.1 -0.251 10.5-160.2 -54.4 134.3 7.6 6.5 7.1 29 29 A A S S+ 0 0 85 1,-0.1 2,-0.3 5,-0.1 -1,-0.1 0.837 72.7 16.5 -85.6 -37.3 8.4 9.6 9.2 30 30 A N S > S- 0 0 77 1,-0.1 3,-1.0 4,-0.0 -1,-0.1 -0.833 87.7 -95.8-131.8 169.8 7.5 8.0 12.6 31 31 A S T 3 S+ 0 0 117 -2,-0.3 34,-0.1 1,-0.3 -1,-0.1 0.947 120.1 60.3 -48.6 -59.3 7.0 4.6 14.0 32 32 A T T 3 S+ 0 0 86 32,-0.1 33,-2.0 -3,-0.1 -1,-0.3 0.814 102.5 67.7 -38.8 -38.1 3.3 4.7 13.6 33 33 A E B < S-c 65 0A 29 -3,-1.0 2,-0.3 31,-0.3 33,-0.2 -0.525 77.1-146.1 -87.1 154.9 4.0 5.1 9.9 34 34 A L - 0 0 11 31,-1.3 2,-0.3 -2,-0.2 -5,-0.1 -0.906 17.1-112.3-122.7 150.5 5.5 2.3 7.8 35 35 A S - 0 0 45 -2,-0.3 2,-0.3 -8,-0.2 -8,-0.2 -0.617 32.3-162.5 -82.6 136.5 7.9 2.5 4.8 36 36 A L - 0 0 3 -10,-1.5 -10,-0.3 -2,-0.3 2,-0.2 -0.875 3.7-147.4-119.9 152.6 6.5 1.4 1.4 37 37 A L > - 0 0 92 -2,-0.3 3,-0.7 -12,-0.3 2,-0.4 -0.734 28.0 -95.5-115.0 164.8 8.3 0.5 -1.9 38 38 A A T 3 S+ 0 0 35 -2,-0.2 -15,-0.2 1,-0.2 3,-0.1 -0.639 105.8 12.9 -82.5 132.6 7.4 0.9 -5.5 39 39 A D T 3 S+ 0 0 132 -17,-1.7 2,-0.4 -2,-0.4 -1,-0.2 0.902 98.6 126.2 71.4 42.4 5.6 -2.0 -7.2 40 40 A E < - 0 0 35 -3,-0.7 -18,-2.9 -18,-0.3 2,-0.5 -0.997 47.9-150.2-136.7 131.9 4.9 -3.8 -3.9 41 41 A V E +A 21 0A 67 -2,-0.4 2,-0.2 -20,-0.3 -20,-0.2 -0.875 22.2 172.7-104.6 128.6 1.6 -5.1 -2.6 42 42 A I E -A 20 0A 11 -22,-1.5 -22,-1.5 -2,-0.5 2,-0.7 -0.732 40.8 -84.8-125.6 175.1 1.0 -5.2 1.2 43 43 A T E -AD 19 58A 28 15,-0.9 15,-1.2 -2,-0.2 2,-0.4 -0.739 46.5-173.6 -87.1 112.9 -1.9 -5.9 3.6 44 44 A V E +AD 18 57A 0 -26,-2.6 -26,-2.8 -2,-0.7 2,-0.3 -0.869 9.5 164.0-109.7 140.6 -4.0 -2.8 4.1 45 45 A F E - D 0 56A 31 11,-0.8 11,-2.6 -2,-0.4 2,-0.3 -0.986 34.1-117.3-155.1 143.1 -6.9 -2.5 6.6 46 46 A S - 0 0 101 -2,-0.3 2,-0.4 9,-0.2 9,-0.1 -0.609 28.1-159.8 -83.6 139.7 -8.9 0.3 8.2 47 47 A V > - 0 0 68 -2,-0.3 3,-1.9 4,-0.2 -2,-0.0 -0.954 31.7 -89.4-123.2 140.5 -8.7 0.8 12.0 48 48 A V T 3 S+ 0 0 148 -2,-0.4 2,-0.4 1,-0.3 3,-0.1 -0.088 114.5 11.4 -43.9 135.5 -11.1 2.6 14.3 49 49 A G T 3 S+ 0 0 73 1,-0.2 -1,-0.3 -3,-0.0 -3,-0.0 -0.077 98.8 128.8 84.3 -37.2 -10.1 6.2 14.7 50 50 A M < - 0 0 39 -3,-1.9 -1,-0.2 -2,-0.4 2,-0.2 0.126 63.3-101.1 -44.0 167.0 -7.7 5.9 11.9 51 51 A D > - 0 0 76 1,-0.1 3,-0.8 -3,-0.1 -4,-0.2 -0.521 14.8-125.1 -94.1 163.6 -7.8 8.5 9.0 52 52 A S T 3 S+ 0 0 114 1,-0.2 -1,-0.1 -2,-0.2 16,-0.1 0.824 112.3 53.1 -75.6 -32.7 -9.4 8.1 5.6 53 53 A D T 3 S+ 0 0 107 14,-0.1 15,-0.7 15,-0.1 16,-0.4 0.139 110.2 59.2 -88.5 20.2 -6.2 9.1 3.8 54 54 A W E < - E 0 67A 61 -3,-0.8 2,-0.2 13,-0.2 -1,-0.1 -0.966 62.8-173.6-152.2 131.7 -4.3 6.4 5.8 55 55 A L E - E 0 66A 14 11,-2.8 11,-2.9 -2,-0.3 2,-1.0 -0.709 36.8 -95.2-119.5 171.7 -4.7 2.6 6.1 56 56 A M E -DE 45 65A 31 -11,-2.6 -11,-0.8 -2,-0.2 2,-0.3 -0.769 44.6-171.3 -92.2 101.7 -3.1 -0.1 8.3 57 57 A G E -DE 44 64A 0 7,-2.1 7,-1.8 -2,-1.0 2,-0.5 -0.737 10.5-156.7 -96.5 142.1 -0.3 -1.6 6.3 58 58 A E E +DE 43 63A 87 -15,-1.2 -15,-0.9 -2,-0.3 2,-0.3 -0.939 28.2 146.6-121.6 110.8 1.6 -4.7 7.4 59 59 A R E > + E 0 62A 96 3,-1.7 3,-1.6 -2,-0.5 -24,-0.1 -0.983 60.0 6.6-141.8 151.8 5.2 -5.2 6.1 60 60 A G T 3 S- 0 0 58 -2,-0.3 -1,-0.2 1,-0.3 3,-0.1 0.911 128.4 -56.8 41.4 60.4 8.4 -6.8 7.4 61 61 A N T 3 S+ 0 0 136 1,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.816 121.1 110.1 42.7 35.5 6.7 -8.1 10.5 62 62 A Q E < - E 0 59A 96 -3,-1.6 -3,-1.7 -58,-0.0 2,-0.3 -0.933 53.6-154.2-136.8 159.6 5.7 -4.5 11.2 63 63 A K E + E 0 58A 114 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.986 27.6 126.9-136.7 146.2 2.6 -2.4 11.2 64 64 A G E - E 0 57A 1 -7,-1.8 -7,-2.1 -2,-0.3 2,-0.5 -0.948 56.2 -56.3-171.8-170.3 1.8 1.3 10.6 65 65 A K E -cE 33 56A 63 -33,-2.0 -31,-1.3 -2,-0.3 -9,-0.2 -0.783 45.1-166.1 -93.8 128.3 -0.1 3.9 8.8 66 66 A V E - E 0 55A 0 -11,-2.9 -11,-2.8 -2,-0.5 2,-0.4 -0.939 24.3-115.6-118.0 135.3 0.1 3.9 5.0 67 67 A P E >> - E 0 54A 5 0, 0.0 3,-2.0 0, 0.0 4,-0.6 -0.522 13.9-151.7 -69.7 119.1 -1.0 6.8 2.7 68 68 A I G >4 S+ 0 0 44 -15,-0.7 3,-0.9 -2,-0.4 5,-0.2 0.808 94.2 70.2 -59.8 -30.0 -3.9 5.7 0.4 69 69 A T G 34 S+ 0 0 97 -16,-0.4 -1,-0.3 1,-0.3 -15,-0.1 0.709 103.9 42.7 -61.0 -19.2 -2.6 8.2 -2.2 70 70 A Y G <4 S+ 0 0 86 -3,-2.0 -47,-3.1 -47,-0.1 -46,-0.6 0.545 107.6 73.0-102.0 -12.5 0.3 5.8 -2.6 71 71 A L E << -B 22 0A 9 -3,-0.9 2,-0.6 -4,-0.6 -49,-0.2 -0.845 63.2-156.9-107.2 141.7 -1.8 2.6 -2.6 72 72 A E E -B 21 0A 110 -51,-1.8 -51,-1.0 -2,-0.4 -3,-0.1 -0.750 21.2-136.4-118.8 83.4 -4.0 1.5 -5.4 73 73 A L E -B 20 0A 54 -2,-0.6 2,-1.5 -53,-0.2 -53,-0.2 -0.109 19.6-133.9 -40.2 106.5 -6.6 -0.9 -3.9 74 74 A L - 0 0 77 -55,-0.9 2,-1.4 1,-0.1 -1,-0.2 -0.529 21.0-164.2 -71.7 91.6 -6.7 -3.7 -6.5 75 75 A N + 0 0 145 -2,-1.5 2,-0.3 2,-0.0 -1,-0.1 -0.638 38.0 125.4 -82.0 91.9 -10.4 -4.1 -7.0 76 76 A S - 0 0 111 -2,-1.4 -2,-0.0 0, 0.0 0, 0.0 -0.956 46.9-140.7-152.9 129.5 -10.6 -7.5 -8.7 77 77 A G - 0 0 67 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.362 31.4 -93.0 -86.1 167.8 -12.5 -10.7 -7.9 78 78 A P - 0 0 131 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.030 34.3-110.2 -69.7 178.0 -11.3 -14.3 -8.3 79 79 A S - 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.798 27.1-137.5-117.9 88.8 -11.9 -16.5 -11.4 80 80 A S 0 0 132 -2,-0.6 0, 0.0 1,-0.2 0, 0.0 -0.195 360.0 360.0 -46.3 112.6 -14.3 -19.3 -10.5 81 81 A G 0 0 128 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.280 360.0 360.0-138.4 360.0 -12.8 -22.3 -12.1