==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAY-05 1X49 . COMPND 2 MOLECULE: INTERFERON-INDUCED, DOUBLE-STRANDED RNA- . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7641.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 67.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 13 13.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 26.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 54.6 16.3 -9.9 16.5 2 2 A S + 0 0 124 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.980 360.0 166.6-129.7 122.0 17.2 -6.3 16.2 3 3 A S - 0 0 119 -2,-0.4 2,-0.1 2,-0.1 0, 0.0 -0.799 37.4-128.8-127.3 169.2 20.6 -5.0 14.9 4 4 A G + 0 0 81 -2,-0.3 2,-0.7 2,-0.0 -2,-0.0 -0.360 58.6 128.9-115.9 52.7 22.0 -1.7 13.8 5 5 A S + 0 0 103 -2,-0.1 2,-0.4 2,-0.0 -2,-0.1 -0.874 24.0 146.3-112.2 100.9 23.6 -2.6 10.4 6 6 A S + 0 0 101 -2,-0.7 4,-0.1 4,-0.1 -2,-0.0 -0.998 10.4 114.4-137.8 133.7 22.5 -0.3 7.6 7 7 A G S S+ 0 0 70 2,-0.9 -1,-0.0 -2,-0.4 3,-0.0 0.067 81.7 10.6-153.1 -89.4 24.4 0.9 4.6 8 8 A M S S+ 0 0 198 1,-0.1 2,-0.3 2,-0.0 -2,-0.0 0.951 125.2 46.1 -72.5 -51.7 23.5 0.2 1.0 9 9 A A S S- 0 0 74 2,-0.0 -2,-0.9 0, 0.0 2,-0.6 -0.748 76.4-144.3 -96.7 141.2 20.1 -1.4 1.6 10 10 A S - 0 0 99 -2,-0.3 2,-0.1 -4,-0.1 -4,-0.1 -0.914 14.3-176.3-109.1 119.8 17.6 0.2 3.9 11 11 A D + 0 0 126 -2,-0.6 -1,-0.1 2,-0.0 -2,-0.0 -0.341 20.8 171.0-107.5 49.7 15.4 -2.1 6.0 12 12 A T > - 0 0 58 -2,-0.1 2,-2.0 1,-0.1 3,-0.7 -0.327 45.3-107.4 -62.9 139.0 13.2 0.6 7.6 13 13 A P T 3 S- 0 0 99 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.455 96.3 -24.2 -69.7 81.3 10.2 -0.6 9.6 14 14 A G T 3> S+ 0 0 3 -2,-2.0 4,-0.9 3,-0.1 5,-0.1 0.981 74.4 175.7 77.7 64.4 7.5 0.4 7.2 15 15 A F H X> S+ 0 0 104 -3,-0.7 4,-1.1 2,-0.2 3,-0.6 0.973 81.9 37.8 -63.8 -56.7 9.0 3.2 5.2 16 16 A Y H >> S+ 0 0 53 1,-0.2 4,-2.0 2,-0.2 3,-1.3 0.946 109.5 61.2 -60.6 -50.7 6.1 3.6 2.7 17 17 A M H 3> S+ 0 0 50 1,-0.3 4,-1.3 2,-0.2 -1,-0.2 0.786 104.7 52.2 -47.2 -29.1 3.5 3.0 5.4 18 18 A D H X S+ 0 0 0 -4,-2.0 4,-2.5 2,-0.2 3,-2.2 0.986 107.3 44.4 -60.8 -62.0 1.0 7.4 3.6 21 21 A N H 3X S+ 0 0 62 -4,-1.3 4,-2.2 1,-0.3 5,-0.3 0.912 107.5 59.7 -49.1 -49.1 -0.1 8.6 7.1 22 22 A K H 3X S+ 0 0 142 -4,-1.7 4,-0.9 1,-0.2 -1,-0.3 0.732 113.4 40.5 -53.5 -21.5 2.0 11.7 6.6 23 23 A Y H S+ 0 0 34 -3,-2.2 4,-2.6 -4,-0.6 5,-0.7 0.827 107.6 58.0 -94.9 -41.0 -0.2 12.3 3.6 24 24 A R H X>S+ 0 0 99 -4,-2.5 5,-0.8 1,-0.2 4,-0.7 0.793 112.5 44.6 -60.1 -28.1 -3.6 11.3 5.1 25 25 A Q H <5S+ 0 0 126 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.935 114.7 44.7 -81.3 -52.3 -3.0 13.9 7.7 26 26 A M H <5S+ 0 0 158 -4,-0.9 -2,-0.2 -5,-0.3 -3,-0.1 0.961 128.0 29.2 -56.5 -56.1 -1.8 16.8 5.5 27 27 A H H <5S- 0 0 118 -4,-2.6 -3,-0.2 -5,-0.1 -1,-0.2 0.944 107.1-124.7 -71.0 -49.9 -4.5 16.2 2.9 28 28 A G T << + 0 0 59 -5,-0.7 -3,-0.2 -4,-0.7 2,-0.2 0.790 54.1 145.4 105.5 41.9 -7.1 14.8 5.2 29 29 A V < - 0 0 26 -5,-0.8 2,-0.6 -6,-0.2 -1,-0.2 -0.550 50.1-111.0-104.7 171.6 -8.0 11.4 3.7 30 30 A A - 0 0 65 -2,-0.2 24,-1.0 2,-0.0 2,-0.5 -0.908 28.8-166.5-109.1 112.9 -9.0 8.1 5.2 31 31 A I E +A 53 0A 25 -2,-0.6 2,-0.4 22,-0.2 22,-0.2 -0.856 8.2 179.9-101.8 127.1 -6.4 5.3 4.9 32 32 A T E -A 52 0A 80 20,-1.6 20,-1.8 -2,-0.5 2,-0.8 -0.988 19.7-147.8-129.6 134.9 -7.5 1.7 5.6 33 33 A Y E -A 51 0A 61 -2,-0.4 2,-0.4 18,-0.2 18,-0.2 -0.858 15.5-156.7-104.8 103.9 -5.4 -1.5 5.4 34 34 A K E -A 50 0A 117 16,-1.8 16,-1.3 -2,-0.8 2,-1.0 -0.654 13.4-134.7 -81.9 128.4 -7.5 -4.5 4.4 35 35 A E E -A 49 0A 130 -2,-0.4 14,-0.2 14,-0.2 -1,-0.1 -0.721 26.9-164.3 -86.7 101.5 -6.1 -7.8 5.5 36 36 A L E - 0 0 35 12,-1.1 12,-0.1 -2,-1.0 14,-0.0 -0.291 24.5 -92.6 -79.8 168.2 -6.4 -10.1 2.5 37 37 A S E - 0 0 102 1,-0.1 11,-1.6 10,-0.1 2,-0.4 0.023 47.3 -89.4 -69.7-177.0 -6.2 -13.9 2.5 38 38 A T E -A 47 0A 43 9,-0.2 2,-0.4 2,-0.0 9,-0.2 -0.797 38.3-171.7-102.0 141.6 -3.0 -15.9 1.9 39 39 A S E +A 46 0A 66 7,-2.5 7,-0.7 -2,-0.4 0, 0.0 -0.997 37.8 55.1-135.8 132.5 -1.8 -17.1 -1.5 40 40 A G S S- 0 0 48 -2,-0.4 5,-0.1 5,-0.2 -2,-0.0 -0.896 81.0 -29.3 144.1-173.4 1.0 -19.4 -2.4 41 41 A P - 0 0 46 0, 0.0 5,-0.1 0, 0.0 -2,-0.0 -0.122 56.2-109.8 -69.8 169.8 2.6 -22.8 -1.8 42 42 A P S S+ 0 0 109 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.850 117.2 46.0 -69.9 -35.8 2.2 -24.9 1.4 43 43 A H S S+ 0 0 157 1,-0.2 2,-0.6 2,-0.0 -3,-0.0 0.955 120.1 36.4 -72.3 -52.5 5.9 -24.4 2.3 44 44 A D S S- 0 0 31 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.911 74.9-164.9-108.9 115.2 6.1 -20.7 1.6 45 45 A R - 0 0 125 -2,-0.6 2,-0.5 -3,-0.2 -5,-0.2 -0.843 2.3-159.7-102.0 132.3 3.0 -18.6 2.5 46 46 A R E -A 39 0A 84 -7,-0.7 -7,-2.5 -2,-0.4 2,-0.5 -0.943 7.7-148.3-115.3 118.2 2.6 -15.1 1.1 47 47 A F E -AB 38 63A 44 16,-1.7 16,-0.9 -2,-0.5 2,-0.3 -0.724 13.7-147.8 -87.3 125.3 0.2 -12.7 2.9 48 48 A T E + B 0 62A 5 -11,-1.6 -12,-1.1 -2,-0.5 2,-0.3 -0.680 19.8 175.9 -93.6 145.9 -1.5 -10.2 0.6 49 49 A F E -AB 35 61A 1 12,-2.3 12,-2.6 -2,-0.3 2,-0.3 -0.971 8.9-172.5-146.0 159.0 -2.5 -6.7 1.7 50 50 A Q E -A 34 0A 15 -16,-1.3 -16,-1.8 -2,-0.3 2,-0.3 -0.988 14.8-134.3-151.6 156.3 -4.0 -3.5 0.3 51 51 A V E -A 33 0A 0 -2,-0.3 7,-1.7 22,-0.2 2,-0.4 -0.817 8.3-152.4-114.5 154.6 -4.7 0.1 1.2 52 52 A L E -A 32 0A 36 -20,-1.8 -20,-1.6 -2,-0.3 2,-0.5 -0.950 12.9-179.0-131.2 113.2 -7.8 2.3 0.8 53 53 A I E S-A 31 0A 8 -2,-0.4 3,-0.4 3,-0.4 -22,-0.2 -0.947 72.5 -8.7-115.7 126.3 -7.6 6.1 0.5 54 54 A D S S- 0 0 103 -24,-1.0 -1,-0.2 -2,-0.5 3,-0.1 0.914 131.2 -52.9 58.3 45.2 -10.7 8.3 0.1 55 55 A E S S+ 0 0 189 -25,-0.5 2,-0.3 1,-0.2 -1,-0.2 0.803 108.6 140.2 61.0 29.3 -12.9 5.2 -0.4 56 56 A K - 0 0 62 -3,-0.4 2,-0.7 0, 0.0 -3,-0.4 -0.812 51.3-133.9-106.6 146.3 -10.5 4.1 -3.1 57 57 A E - 0 0 139 -2,-0.3 -5,-0.2 -5,-0.2 -3,-0.0 -0.871 22.9-162.4-103.0 112.2 -9.3 0.5 -3.8 58 58 A F - 0 0 7 -7,-1.7 2,-0.9 -2,-0.7 19,-0.1 -0.540 34.3 -89.7 -91.2 157.7 -5.6 0.2 -4.4 59 59 A P - 0 0 67 0, 0.0 17,-0.2 0, 0.0 18,-0.1 -0.534 48.3-133.0 -69.8 103.6 -3.8 -2.8 -6.0 60 60 A E - 0 0 96 -2,-0.9 2,-0.3 -10,-0.1 -10,-0.3 0.160 21.8-148.4 -46.4 173.4 -3.0 -5.2 -3.1 61 61 A A E -B 49 0A 17 -12,-2.6 -12,-2.3 -14,-0.0 2,-0.3 -0.987 9.3-116.3-149.7 156.3 0.5 -6.7 -2.9 62 62 A K E +B 48 0A 144 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.657 33.0 172.0 -95.0 151.0 2.2 -9.8 -1.7 63 63 A G E -B 47 0A 1 -16,-0.9 -16,-1.7 -2,-0.3 6,-0.3 -0.967 42.2-120.3-160.3 141.8 4.7 -10.0 1.2 64 64 A R S S+ 0 0 141 -2,-0.3 -17,-0.4 -18,-0.2 2,-0.3 0.925 100.5 13.7 -43.7 -59.5 6.6 -12.6 3.3 65 65 A S S > S- 0 0 68 -19,-0.1 4,-2.9 -3,-0.1 5,-0.2 -0.773 92.5 -94.5-118.9 164.2 5.0 -11.3 6.5 66 66 A K H > S+ 0 0 83 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.864 127.5 47.4 -41.1 -45.7 2.0 -9.1 7.4 67 67 A Q H > S+ 0 0 110 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.982 110.0 48.8 -62.4 -59.9 4.5 -6.2 7.6 68 68 A E H > S+ 0 0 107 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.834 115.5 48.6 -49.6 -35.3 6.4 -6.9 4.4 69 69 A A H X S+ 0 0 0 -4,-2.9 4,-2.8 -6,-0.3 5,-0.3 0.972 110.6 46.6 -70.4 -56.7 3.0 -7.1 2.7 70 70 A R H X S+ 0 0 63 -4,-2.9 4,-1.9 -5,-0.2 -2,-0.2 0.913 113.0 51.2 -52.0 -47.7 1.5 -3.9 4.1 71 71 A N H X S+ 0 0 34 -4,-2.9 4,-1.4 2,-0.2 -1,-0.2 0.914 111.9 47.3 -57.4 -45.3 4.7 -2.0 3.2 72 72 A A H >X S+ 0 0 29 -4,-1.6 4,-1.3 -5,-0.3 3,-1.0 0.969 108.0 53.1 -61.1 -56.3 4.6 -3.3 -0.3 73 73 A A H 3X S+ 0 0 1 -4,-2.8 4,-1.3 1,-0.3 -22,-0.2 0.848 108.1 53.5 -47.9 -38.3 0.9 -2.6 -0.9 74 74 A A H 3X S+ 0 0 0 -4,-1.9 4,-3.2 -5,-0.3 5,-0.4 0.851 97.3 65.6 -66.9 -35.3 1.7 1.0 0.2 75 75 A K H X S+ 0 0 0 -4,-1.3 4,-2.2 -5,-0.2 3,-1.6 0.991 113.1 43.8 -67.0 -63.2 -0.4 3.5 -3.4 78 78 A V H 3X S+ 0 0 21 -4,-3.2 4,-1.9 1,-0.3 -1,-0.2 0.843 109.6 60.3 -51.2 -36.3 2.1 6.2 -2.5 79 79 A D H 3< S+ 0 0 90 -4,-1.8 4,-0.3 -5,-0.4 -1,-0.3 0.827 109.3 43.0 -62.2 -32.2 3.5 5.8 -6.0 80 80 A I H XX>S+ 0 0 51 -3,-1.6 4,-2.7 -4,-0.9 3,-2.4 0.951 107.5 56.6 -78.4 -54.5 0.1 6.8 -7.4 81 81 A L H 3<5S+ 0 0 15 -4,-2.2 -2,-0.2 1,-0.3 -3,-0.1 0.913 96.1 64.8 -41.6 -58.3 -0.7 9.6 -5.1 82 82 A D T 3<5S+ 0 0 147 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.792 117.1 30.5 -36.6 -35.2 2.5 11.4 -6.1 83 83 A N T <45S- 0 0 112 -3,-2.4 -1,-0.3 -4,-0.3 -2,-0.3 0.754 87.5-160.6 -96.5 -31.6 0.9 11.6 -9.5 84 84 A E T <5 + 0 0 82 -4,-2.7 2,-1.1 1,-0.2 -3,-0.2 0.830 35.1 151.7 52.1 33.8 -2.7 11.8 -8.3 85 85 A N < + 0 0 109 -5,-0.6 2,-0.2 2,-0.0 -1,-0.2 -0.680 18.9 175.4 -98.1 81.0 -3.7 10.7 -11.8 86 86 A K - 0 0 112 -2,-1.1 2,-0.4 -3,-0.1 3,-0.0 -0.561 26.4-125.5 -86.3 150.4 -6.9 8.8 -11.3 87 87 A V - 0 0 113 -2,-0.2 -1,-0.0 1,-0.1 -2,-0.0 -0.809 29.4-104.4 -99.4 135.1 -9.0 7.4 -14.1 88 88 A D - 0 0 111 -2,-0.4 3,-0.1 1,-0.1 -1,-0.1 -0.297 30.7-169.3 -56.5 131.2 -12.7 8.3 -14.5 89 89 A C S S+ 0 0 127 1,-0.2 2,-0.7 -3,-0.0 -1,-0.1 0.930 71.5 51.3 -87.6 -58.1 -14.9 5.4 -13.4 90 90 A H S S- 0 0 156 1,-0.0 2,-0.6 3,-0.0 -1,-0.2 -0.746 78.9-146.1 -87.7 116.0 -18.4 6.5 -14.6 91 91 A T - 0 0 112 -2,-0.7 2,-0.7 -3,-0.1 -1,-0.0 -0.725 19.3-122.9 -85.6 116.6 -18.3 7.6 -18.3 92 92 A S - 0 0 105 -2,-0.6 -1,-0.1 1,-0.1 -2,-0.0 -0.413 36.7-163.4 -60.7 104.7 -20.8 10.4 -18.9 93 93 A G - 0 0 42 -2,-0.7 -1,-0.1 1,-0.1 -3,-0.0 0.238 44.9 -66.2 -72.7-158.8 -23.0 8.9 -21.6 94 94 A P S S+ 0 0 124 0, 0.0 3,-0.2 0, 0.0 2,-0.2 0.580 84.8 137.5 -69.7 -9.2 -25.4 10.8 -24.0 95 95 A S + 0 0 110 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.161 12.3 141.3 -43.8 101.5 -27.5 11.7 -20.9 96 96 A S 0 0 124 -2,-0.2 -1,-0.2 0, 0.0 -3,-0.0 0.681 360.0 360.0-116.0 -37.2 -28.2 15.4 -21.8 97 97 A G 0 0 123 -3,-0.2 -2,-0.1 0, 0.0 0, 0.0 0.578 360.0 360.0 132.9 360.0 -31.8 15.8 -20.6