==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-MAY-05 1X4D . COMPND 2 MOLECULE: MATRIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7465.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 56.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 19.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-113.8 -1.6 -0.2 20.8 2 2 A S + 0 0 118 1,-0.1 2,-0.3 0, 0.0 0, 0.0 -0.151 360.0 85.7-145.0 42.1 -4.2 2.3 21.9 3 3 A S + 0 0 123 2,-0.0 2,-0.2 0, 0.0 -1,-0.1 -0.858 57.9 75.7-150.3 109.7 -5.2 4.1 18.7 4 4 A G - 0 0 80 -2,-0.3 2,-0.3 -3,-0.1 0, 0.0 -0.593 45.5-147.3 155.7 142.1 -7.9 3.0 16.2 5 5 A S - 0 0 131 -2,-0.2 2,-0.1 2,-0.1 -2,-0.0 -0.929 15.7-129.7-129.6 153.3 -11.6 2.7 15.8 6 6 A S + 0 0 126 -2,-0.3 -2,-0.0 2,-0.0 2,-0.0 -0.456 46.5 113.0 -95.4 170.3 -14.0 0.2 14.0 7 7 A G - 0 0 63 -2,-0.1 2,-0.1 2,-0.0 -2,-0.1 0.143 47.1-130.7 129.3 114.2 -16.7 0.9 11.5 8 8 A Q + 0 0 187 -2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.405 27.1 177.7 -84.7 163.4 -17.1 0.0 7.8 9 9 A K - 0 0 203 1,-0.3 -2,-0.0 -2,-0.1 0, 0.0 -0.975 30.4-100.9-158.2 166.4 -18.1 2.5 5.1 10 10 A G - 0 0 69 -2,-0.3 2,-0.3 1,-0.2 -1,-0.3 0.680 58.5 -72.9 -63.0-128.6 -18.7 2.8 1.4 11 11 A R - 0 0 166 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.926 34.9-162.7-136.7 160.8 -16.1 4.4 -0.9 12 12 A V - 0 0 106 -2,-0.3 2,-1.4 2,-0.1 0, 0.0 -0.984 20.7-136.2-148.7 134.2 -14.8 7.8 -1.6 13 13 A E + 0 0 156 -2,-0.3 2,-0.4 3,-0.0 3,-0.1 -0.625 53.9 135.9 -90.7 79.5 -12.7 9.3 -4.5 14 14 A T - 0 0 63 -2,-1.4 -2,-0.1 1,-0.3 0, 0.0 -0.978 65.8 -52.1-132.2 121.7 -10.2 11.4 -2.5 15 15 A R - 0 0 67 -2,-0.4 2,-0.3 1,-0.1 -1,-0.3 0.147 69.2 -93.6 43.4-168.8 -6.5 11.5 -3.2 16 16 A R + 0 0 74 75,-0.2 43,-0.3 43,-0.1 2,-0.3 -0.850 52.6 150.1-147.0 106.0 -4.5 8.3 -3.4 17 17 A V E -A 89 0A 0 72,-1.0 72,-1.2 -2,-0.3 2,-0.8 -0.798 21.4-166.9-141.0 95.8 -2.7 6.8 -0.5 18 18 A V E -AB 88 57A 1 39,-2.6 39,-1.9 -2,-0.3 2,-0.4 -0.737 13.2-153.5 -86.9 110.3 -2.4 3.0 -0.3 19 19 A H E -AB 87 56A 19 68,-1.2 68,-2.8 -2,-0.8 2,-0.4 -0.675 11.1-170.1 -86.2 134.4 -1.3 1.9 3.2 20 20 A I E +AB 86 55A 0 35,-2.6 35,-1.9 -2,-0.4 2,-0.2 -0.988 11.5 162.5-129.6 127.5 0.7 -1.4 3.5 21 21 A M E +A 85 0A 16 64,-1.9 64,-2.7 -2,-0.4 33,-0.1 -0.727 52.3 50.5-131.1-179.6 1.6 -3.2 6.7 22 22 A D S S+ 0 0 82 31,-0.3 2,-0.4 1,-0.2 57,-0.1 0.657 81.9 134.5 62.4 14.3 2.7 -6.6 7.9 23 23 A F - 0 0 0 30,-0.7 -1,-0.2 -3,-0.1 2,-0.1 -0.782 44.1-148.8 -99.1 139.5 5.4 -6.3 5.2 24 24 A Q - 0 0 103 -2,-0.4 2,-0.2 55,-0.2 -1,-0.0 -0.330 8.9-133.1 -95.9-179.5 9.0 -7.2 5.9 25 25 A R + 0 0 115 -2,-0.1 2,-0.2 7,-0.0 -1,-0.0 -0.792 44.7 107.5-130.0 172.7 12.2 -5.8 4.4 26 26 A G S S+ 0 0 65 -2,-0.2 2,-0.6 0, 0.0 3,-0.3 -0.719 73.3 17.8 163.6-107.7 15.5 -7.0 2.9 27 27 A K S S- 0 0 172 1,-0.2 5,-0.1 -2,-0.2 0, 0.0 -0.888 132.3 -13.5-104.9 115.7 16.6 -7.1 -0.7 28 28 A N S > S+ 0 0 113 -2,-0.6 4,-1.4 3,-0.1 -1,-0.2 0.911 82.9 154.9 63.3 43.8 14.7 -4.7 -3.1 29 29 A L H >> + 0 0 13 -3,-0.3 4,-1.8 2,-0.2 3,-0.9 0.979 64.9 59.6 -64.8 -58.2 12.0 -4.1 -0.5 30 30 A R H 3> S+ 0 0 151 1,-0.3 4,-1.9 2,-0.2 -1,-0.2 0.789 109.6 48.3 -40.7 -32.1 10.9 -0.7 -1.8 31 31 A Y H 3> S+ 0 0 123 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.873 102.3 60.0 -78.5 -39.7 10.2 -2.6 -5.0 32 32 A Q H << S+ 0 0 46 -4,-1.4 -2,-0.2 -3,-0.9 -1,-0.2 0.850 115.0 36.9 -56.5 -35.8 8.3 -5.4 -3.3 33 33 A L H >< S+ 0 0 2 -4,-1.8 3,-1.8 2,-0.2 4,-0.2 0.892 115.9 50.9 -83.5 -44.6 5.8 -2.9 -2.1 34 34 A L H >X S+ 0 0 22 -4,-1.9 4,-3.1 -5,-0.3 3,-1.3 0.755 100.0 67.1 -64.6 -24.0 5.8 -0.6 -5.1 35 35 A Q T 3< S+ 0 0 79 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.617 88.2 67.7 -71.7 -12.0 5.1 -3.7 -7.2 36 36 A L T <4 S+ 0 0 18 -3,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.618 119.2 18.7 -81.9 -13.6 1.7 -3.9 -5.5 37 37 A V T X> S+ 0 0 0 -3,-1.3 3,-2.1 -4,-0.2 4,-1.4 0.559 106.2 82.3-126.1 -26.3 0.7 -0.8 -7.3 38 38 A E G >< S+ 0 0 108 -4,-3.1 3,-1.4 1,-0.3 -3,-0.2 0.942 99.3 41.4 -45.4 -60.8 3.2 -0.5 -10.2 39 39 A P G 34 S+ 0 0 99 0, 0.0 -1,-0.3 0, 0.0 3,-0.1 0.440 114.4 57.2 -69.8 2.2 1.2 -2.9 -12.4 40 40 A F G <4 S- 0 0 57 -3,-2.1 2,-0.3 1,-0.2 -2,-0.2 0.568 125.4 -54.5-106.9 -16.1 -1.9 -1.2 -11.2 41 41 A G S << S- 0 0 30 -3,-1.4 2,-0.3 -4,-1.4 -1,-0.2 -0.924 77.7 -36.1 174.4-148.6 -1.0 2.3 -12.3 42 42 A V - 0 0 75 -2,-0.3 18,-0.9 19,-0.1 2,-0.6 -0.783 47.9-121.4-107.7 151.4 1.7 5.0 -12.1 43 43 A I E +C 59 0A 57 -2,-0.3 16,-0.2 16,-0.2 3,-0.1 -0.815 32.9 166.5 -95.2 117.5 3.9 5.9 -9.1 44 44 A S E - 0 0 53 14,-2.4 2,-0.2 -2,-0.6 15,-0.2 0.859 69.3 -24.6 -93.6 -45.9 3.6 9.5 -7.9 45 45 A N E -C 58 0A 43 13,-1.7 13,-2.8 2,-0.0 -1,-0.3 -0.809 58.8-165.4-172.7 128.0 5.3 9.3 -4.6 46 46 A H E -C 57 0A 61 11,-0.3 2,-0.3 -2,-0.2 11,-0.2 -0.708 4.1-157.3-114.8 167.0 6.0 6.6 -2.0 47 47 A L E -C 56 0A 29 9,-2.1 9,-2.7 -2,-0.2 2,-0.5 -0.956 7.9-177.3-149.7 126.5 7.1 6.6 1.6 48 48 A I E -C 55 0A 39 -2,-0.3 7,-0.2 7,-0.2 2,-0.1 -0.907 19.9-143.7-129.2 104.7 8.8 3.9 3.7 49 49 A L - 0 0 55 5,-1.5 5,-0.3 -2,-0.5 3,-0.1 -0.377 6.1-144.7 -65.7 139.8 9.4 4.6 7.4 50 50 A N S S+ 0 0 137 1,-0.2 -1,-0.1 -2,-0.1 3,-0.1 -0.073 90.9 64.4 -95.9 33.1 12.7 3.2 8.8 51 51 A K S S- 0 0 192 1,-0.4 2,-0.2 3,-0.2 -1,-0.2 0.675 110.6 -3.6-119.6 -42.4 11.1 2.5 12.2 52 52 A I S S- 0 0 76 2,-0.2 2,-1.0 -3,-0.1 -1,-0.4 -0.756 85.1 -78.4-140.7-173.4 8.4 -0.1 11.5 53 53 A N S S+ 0 0 71 -2,-0.2 -30,-0.7 -3,-0.1 2,-0.5 -0.292 83.9 122.8 -88.8 50.2 6.7 -2.1 8.7 54 54 A E + 0 0 71 -2,-1.0 -5,-1.5 -5,-0.3 2,-0.3 -0.955 30.4 161.6-118.5 119.3 4.6 0.9 7.7 55 55 A A E -BC 20 48A 1 -35,-1.9 -35,-2.6 -2,-0.5 2,-0.4 -0.960 19.1-160.1-135.5 152.8 4.7 2.2 4.1 56 56 A F E -BC 19 47A 3 -9,-2.7 -9,-2.1 -2,-0.3 2,-0.4 -0.996 3.0-162.4-137.4 131.7 2.4 4.4 2.0 57 57 A I E -BC 18 46A 3 -39,-1.9 -39,-2.6 -2,-0.4 2,-0.5 -0.945 7.4-152.1-117.0 132.0 2.3 4.7 -1.8 58 58 A E E - C 0 45A 12 -13,-2.8 -14,-2.4 -2,-0.4 -13,-1.7 -0.886 11.3-156.0-105.6 127.0 0.7 7.6 -3.7 59 59 A M E - C 0 43A 0 -2,-0.5 -16,-0.2 -43,-0.3 3,-0.1 -0.593 25.5-122.0 -97.6 160.9 -0.7 7.1 -7.2 60 60 A A S S+ 0 0 43 -18,-0.9 2,-0.4 1,-0.2 -1,-0.1 0.765 102.0 30.3 -70.6 -25.8 -1.3 9.6 -9.9 61 61 A T S >> S- 0 0 67 -19,-0.3 3,-2.7 1,-0.1 4,-0.9 -0.988 73.4-135.3-139.9 128.1 -5.0 8.7 -10.0 62 62 A T H 3> S+ 0 0 16 -2,-0.4 4,-2.4 1,-0.3 5,-0.3 0.773 105.1 71.5 -48.4 -27.4 -7.2 7.4 -7.2 63 63 A E H 3> S+ 0 0 160 2,-0.2 4,-1.2 1,-0.2 -1,-0.3 0.849 99.2 46.8 -59.1 -35.0 -8.4 4.9 -9.8 64 64 A D H X> S+ 0 0 26 -3,-2.7 4,-2.3 2,-0.2 3,-0.7 0.994 112.9 43.6 -70.4 -67.0 -5.1 3.1 -9.5 65 65 A A H 3X S+ 0 0 0 -4,-0.9 4,-1.4 1,-0.3 -2,-0.2 0.905 112.7 54.4 -44.1 -52.7 -4.6 2.9 -5.8 66 66 A Q H 3X S+ 0 0 48 -4,-2.4 4,-1.6 1,-0.2 3,-0.4 0.884 108.7 49.5 -50.7 -42.9 -8.3 1.9 -5.3 67 67 A A H X S+ 0 0 20 -4,-1.4 3,-2.3 -3,-0.4 4,-1.3 0.912 99.8 60.0 -76.2 -45.2 -6.8 -2.6 -3.0 70 70 A D H 3X S+ 0 0 84 -4,-1.6 4,-0.9 1,-0.3 -1,-0.2 0.665 100.8 60.4 -57.4 -14.6 -9.4 -4.6 -4.8 71 71 A Y H 3X S+ 0 0 111 -4,-0.9 4,-1.5 -3,-0.2 -1,-0.3 0.691 101.1 51.3 -85.9 -21.1 -6.6 -7.1 -5.5 72 72 A Y H <4 S+ 0 0 84 -3,-2.3 5,-0.2 -4,-0.3 -2,-0.2 0.736 110.0 48.8 -86.0 -25.6 -5.9 -7.6 -1.8 73 73 A T H < S+ 0 0 102 -4,-1.3 -2,-0.2 1,-0.1 -1,-0.1 0.766 124.2 30.4 -83.8 -28.0 -9.6 -8.4 -1.0 74 74 A T H < S+ 0 0 95 -4,-0.9 -2,-0.2 1,-0.3 -3,-0.2 0.760 128.8 34.6 -98.9 -33.6 -9.9 -10.9 -3.9 75 75 A T S < S- 0 0 47 -4,-1.5 2,-0.4 -5,-0.1 -1,-0.3 -0.975 86.2-111.7-128.3 138.9 -6.3 -12.1 -4.0 76 76 A P - 0 0 99 0, 0.0 2,-1.1 0, 0.0 -4,-0.1 -0.514 26.1-140.2 -69.7 121.7 -3.8 -12.7 -1.1 77 77 A A - 0 0 10 -2,-0.4 7,-1.3 -5,-0.2 2,-0.8 -0.718 20.8-172.1 -87.4 98.5 -0.9 -10.2 -1.2 78 78 A L E -D 83 0B 101 -2,-1.1 2,-0.6 5,-0.2 3,-0.1 -0.820 4.3-162.7 -96.1 110.2 2.2 -12.2 -0.3 79 79 A V E > S-D 82 0B 3 3,-2.8 3,-2.1 -2,-0.8 -55,-0.2 -0.819 76.0 -14.6 -96.3 122.5 5.2 -9.9 0.2 80 80 A F T 3 S- 0 0 65 -2,-0.6 -1,-0.2 1,-0.3 -55,-0.0 0.543 133.5 -52.8 66.0 4.7 8.6 -11.6 0.1 81 81 A G T 3 S+ 0 0 61 1,-0.4 -1,-0.3 -3,-0.1 -2,-0.1 0.128 123.0 93.0 116.9 -19.2 6.6 -14.9 0.5 82 82 A K E < S-D 79 0B 65 -3,-2.1 -3,-2.8 1,-0.1 -1,-0.4 -0.756 79.4-100.6-108.1 154.6 4.6 -13.9 3.5 83 83 A P E +D 78 0B 91 0, 0.0 2,-0.2 0, 0.0 -5,-0.2 -0.297 42.3 177.1 -69.7 154.3 1.1 -12.3 3.8 84 84 A V - 0 0 12 -7,-1.3 2,-0.4 -61,-0.1 -62,-0.2 -0.717 26.5 -99.0-141.6-168.7 0.6 -8.6 4.4 85 85 A R E -A 21 0A 120 -64,-2.7 -64,-1.9 -2,-0.2 2,-0.4 -0.970 26.8-173.4-126.8 140.1 -2.0 -5.9 4.7 86 86 A V E +A 20 0A 5 -2,-0.4 2,-0.3 -66,-0.2 -66,-0.2 -0.997 10.1 164.3-135.9 132.5 -3.2 -3.4 2.2 87 87 A H E -A 19 0A 72 -68,-2.8 -68,-1.2 -2,-0.4 2,-0.6 -0.885 38.9-118.9-139.2 169.7 -5.6 -0.5 2.6 88 88 A L E +A 18 0A 35 -2,-0.3 -70,-0.2 -70,-0.2 -22,-0.0 -0.679 43.8 169.5-114.0 76.5 -6.7 2.7 0.8 89 89 A S E -A 17 0A 33 -72,-1.2 -72,-1.0 -2,-0.6 2,-0.0 -0.018 28.1-142.1 -74.7-175.7 -5.9 5.6 3.3 90 90 A Q + 0 0 103 -74,-0.1 2,-0.2 -72,-0.0 3,-0.1 -0.455 50.6 111.0-152.9 71.6 -6.0 9.3 2.5 91 91 A K + 0 0 89 1,-0.2 4,-0.2 2,-0.0 -75,-0.2 -0.742 38.5 63.4-134.1-178.1 -3.1 11.2 4.2 92 92 A Y > - 0 0 95 -2,-0.2 3,-0.9 2,-0.1 -1,-0.2 0.997 61.5-146.2 61.0 76.0 0.1 13.1 3.4 93 93 A K T 3 S+ 0 0 166 1,-0.3 2,-0.2 2,-0.1 3,-0.1 0.869 89.3 0.3 -34.5 -58.5 -1.2 16.0 1.3 94 94 A R T 3 - 0 0 182 1,-0.1 -1,-0.3 3,-0.0 -2,-0.1 -0.672 64.6-167.2-140.4 82.3 2.0 15.9 -0.8 95 95 A I S < S+ 0 0 32 -3,-0.9 2,-0.3 -2,-0.2 -1,-0.1 0.797 84.9 11.6 -35.9 -37.0 4.4 13.2 0.3 96 96 A K S S- 0 0 141 -4,-0.1 2,-0.2 -3,-0.1 -1,-0.1 -0.997 72.0-154.1-147.2 147.9 6.9 15.1 -1.9 97 97 A S - 0 0 111 -2,-0.3 -3,-0.0 1,-0.1 -2,-0.0 -0.693 26.9 -96.6-117.2 170.6 7.0 18.4 -3.8 98 98 A G - 0 0 41 -2,-0.2 -1,-0.1 2,-0.2 0, 0.0 -0.332 34.7-106.3 -83.7 168.0 8.8 19.7 -6.8 99 99 A P S S+ 0 0 140 0, 0.0 2,-1.3 0, 0.0 -1,-0.1 0.532 88.4 111.6 -69.8 -5.2 12.0 21.7 -7.0 100 100 A S + 0 0 105 1,-0.1 -2,-0.2 2,-0.1 0, 0.0 -0.585 44.1 96.8 -75.3 95.7 9.9 24.8 -7.8 101 101 A S 0 0 119 -2,-1.3 -1,-0.1 0, 0.0 0, 0.0 -0.245 360.0 360.0 178.1 81.8 10.3 26.9 -4.6 102 102 A G 0 0 135 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 -0.695 360.0 360.0 -85.1 360.0 12.9 29.7 -4.5