==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN 15-MAY-05 1X4U . COMPND 2 MOLECULE: ZINC FINGER, FYVE DOMAIN CONTAINING 27 ISOFORM B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6662.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 31 36.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 112.6 5.5 28.5 -19.1 2 2 A S - 0 0 132 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.974 360.0-155.1-123.1 127.9 5.1 25.1 -17.4 3 3 A S + 0 0 131 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.772 36.6 129.2-101.6 144.8 1.8 23.5 -16.5 4 4 A G + 0 0 73 -2,-0.3 2,-0.4 1,-0.0 -1,-0.1 0.116 26.7 129.8 171.9 56.2 1.3 21.0 -13.8 5 5 A S - 0 0 122 2,-0.0 2,-0.5 0, 0.0 -2,-0.0 -0.984 42.3-143.5-127.7 133.1 -1.6 21.7 -11.4 6 6 A S - 0 0 80 -2,-0.4 2,-0.5 2,-0.1 0, 0.0 -0.824 8.2-167.8 -97.7 125.9 -4.4 19.3 -10.3 7 7 A G + 0 0 89 -2,-0.5 2,-0.3 3,-0.0 -1,-0.1 -0.532 44.6 114.6-111.1 65.5 -7.8 20.8 -9.8 8 8 A R S S- 0 0 160 -2,-0.5 -2,-0.1 1,-0.1 0, 0.0 -0.906 75.2 -64.6-131.3 159.2 -9.7 18.0 -8.0 9 9 A Y - 0 0 163 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 0.031 44.6-122.8 -39.3 143.2 -11.3 17.5 -4.6 10 10 A P S S+ 0 0 139 0, 0.0 -1,-0.2 0, 0.0 2,-0.2 0.537 89.9 84.3 -69.7 -5.6 -8.7 17.5 -1.8 11 11 A T - 0 0 96 3,-0.0 2,-0.3 1,-0.0 3,-0.1 -0.484 69.6-140.9 -95.2 167.7 -9.9 14.1 -0.8 12 12 A N - 0 0 99 -2,-0.2 6,-0.0 1,-0.1 -1,-0.0 -0.913 33.9 -76.6-129.3 156.1 -8.9 10.7 -2.2 13 13 A N + 0 0 74 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 -0.022 54.7 180.0 -45.8 150.9 -10.7 7.5 -3.1 14 14 A F + 0 0 156 -3,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.898 48.7 54.1-148.0 175.3 -11.7 5.3 -0.1 15 15 A G S S+ 0 0 27 -2,-0.3 9,-0.7 1,-0.1 2,-0.3 0.202 109.0 51.2 80.4 -18.6 -13.4 2.0 0.8 16 16 A N S S- 0 0 42 7,-0.2 7,-0.2 1,-0.1 -1,-0.1 -0.846 101.8 -63.7-140.4 175.9 -11.1 0.2 -1.6 17 17 A C - 0 0 0 5,-0.3 4,-0.3 -2,-0.3 23,-0.2 -0.236 34.3-138.0 -62.0 151.0 -7.4 -0.2 -2.5 18 18 A T S S+ 0 0 43 21,-1.4 -1,-0.1 2,-0.1 22,-0.1 0.107 98.0 38.9 -97.5 20.7 -5.5 2.9 -3.7 19 19 A G S S+ 0 0 48 3,-0.0 -1,-0.1 51,-0.0 21,-0.1 0.597 132.3 12.7-131.6 -51.9 -3.7 0.9 -6.4 20 20 A C S S- 0 0 69 2,-0.1 3,-0.1 0, 0.0 -2,-0.1 0.329 89.8-128.3-112.6 2.6 -5.9 -1.7 -8.0 21 21 A S + 0 0 79 -4,-0.3 2,-0.8 1,-0.2 -3,-0.1 0.892 51.3 159.6 49.5 44.7 -9.2 -0.4 -6.6 22 22 A A - 0 0 31 3,-0.0 -5,-0.3 1,-0.0 -1,-0.2 -0.847 40.7-125.6-103.2 102.9 -10.0 -3.8 -5.3 23 23 A T - 0 0 91 -2,-0.8 2,-1.1 -7,-0.2 -7,-0.2 0.032 24.6-112.1 -41.2 149.7 -12.6 -3.7 -2.5 24 24 A F - 0 0 33 -9,-0.7 -1,-0.1 17,-0.1 6,-0.1 -0.755 39.6-167.2 -94.2 94.9 -11.6 -5.5 0.7 25 25 A S - 0 0 59 -2,-1.1 5,-0.1 1,-0.1 -3,-0.0 -0.197 44.9 -84.3 -74.6 170.2 -13.8 -8.5 1.0 26 26 A V S S+ 0 0 142 1,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.811 135.7 44.4 -43.4 -34.4 -14.2 -10.6 4.2 27 27 A L S S+ 0 0 142 2,-0.0 -1,-0.2 0, 0.0 2,-0.2 0.936 104.1 69.7 -77.7 -50.2 -11.1 -12.4 3.0 28 28 A K S S- 0 0 63 -5,-0.1 2,-0.5 1,-0.0 13,-0.0 -0.485 73.8-149.1 -72.5 137.3 -9.1 -9.4 1.9 29 29 A K - 0 0 128 -2,-0.2 2,-0.9 11,-0.0 11,-0.1 -0.938 20.2-118.0-113.4 125.1 -7.8 -7.2 4.8 30 30 A R - 0 0 125 -2,-0.5 11,-0.2 -6,-0.1 -7,-0.0 -0.424 41.0-164.2 -61.5 99.7 -7.3 -3.4 4.3 31 31 A R E -A 40 0A 84 9,-2.4 9,-1.4 -2,-0.9 2,-0.4 -0.217 10.4-130.8 -80.3 174.6 -3.6 -3.1 4.9 32 32 A S E -A 39 0A 90 7,-0.2 7,-0.2 13,-0.1 35,-0.1 -0.985 15.6-126.6-135.0 124.6 -1.7 0.2 5.6 33 33 A C - 0 0 9 5,-3.0 35,-0.2 -2,-0.4 12,-0.0 -0.100 6.8-146.6 -61.0 164.0 1.4 1.4 3.9 34 34 A S S S+ 0 0 60 33,-0.6 34,-0.1 3,-0.1 -1,-0.1 0.712 91.7 35.7-104.1 -30.8 4.5 2.4 5.9 35 35 A N S S+ 0 0 51 32,-0.2 33,-0.1 3,-0.1 19,-0.0 0.942 133.8 18.7 -85.7 -74.4 5.8 5.2 3.7 36 36 A C S S- 0 0 47 33,-0.1 32,-0.0 2,-0.0 -2,-0.0 0.862 94.9-137.4 -66.8 -36.5 2.8 7.0 2.2 37 37 A G + 0 0 51 1,-0.2 2,-0.2 32,-0.0 -3,-0.1 0.861 52.1 138.9 80.6 37.6 0.6 5.6 4.9 38 38 A N - 0 0 69 1,-0.1 -5,-3.0 -20,-0.0 2,-0.3 -0.587 57.0 -91.2-108.7 172.4 -2.4 4.8 2.6 39 39 A S E +A 32 0A 36 -7,-0.2 -21,-1.4 -2,-0.2 2,-0.3 -0.615 49.5 162.3 -85.9 142.7 -4.8 1.9 2.4 40 40 A F E -A 31 0A 3 -9,-1.4 -9,-2.4 -2,-0.3 -23,-0.0 -0.975 34.2-103.7-153.8 163.6 -4.0 -1.1 0.1 41 41 A C > - 0 0 2 -2,-0.3 4,-1.6 -11,-0.2 3,-0.1 -0.076 45.2 -93.9 -79.9-175.2 -4.9 -4.7 -0.6 42 42 A S T 4 S+ 0 0 49 1,-0.2 -1,-0.1 2,-0.2 -12,-0.1 0.284 125.2 49.8 -84.7 11.1 -2.9 -7.8 0.3 43 43 A R T 4 S+ 0 0 212 4,-0.0 3,-0.4 2,-0.0 -1,-0.2 0.605 112.5 41.4-118.2 -26.6 -1.4 -7.7 -3.1 44 44 A C T 4 S+ 0 0 20 1,-0.2 26,-1.8 25,-0.1 -2,-0.2 0.810 112.8 52.4 -91.2 -36.2 -0.2 -4.1 -3.4 45 45 A C S < S+ 0 0 7 -4,-1.6 24,-0.2 24,-0.2 -1,-0.2 -0.111 81.0 101.9 -91.8 36.2 1.1 -3.8 0.2 46 46 A S + 0 0 76 -3,-0.4 2,-0.5 21,-0.1 -1,-0.2 -0.198 51.1 111.1-111.5 39.7 3.3 -6.9 -0.3 47 47 A F E -B 68 0B 69 21,-1.2 21,-2.6 -3,-0.1 2,-0.5 -0.964 55.3-148.5-119.9 123.5 6.6 -5.1 -0.8 48 48 A K E +B 67 0B 130 -2,-0.5 19,-0.2 19,-0.2 -2,-0.1 -0.776 27.5 161.5 -92.7 127.5 9.4 -5.2 1.7 49 49 A V E -B 66 0B 12 17,-3.0 17,-3.1 -2,-0.5 2,-0.1 -0.997 39.4-102.4-146.3 148.4 11.6 -2.1 1.9 50 50 A P - 0 0 62 0, 0.0 15,-0.2 0, 0.0 13,-0.1 -0.383 16.2-156.9 -69.7 144.7 14.1 -0.6 4.4 51 51 A K S >> S+ 0 0 80 13,-0.3 3,-2.2 1,-0.1 4,-0.8 0.733 84.4 76.0 -92.1 -27.3 13.0 2.3 6.6 52 52 A S T 34 S+ 0 0 27 1,-0.3 3,-0.2 12,-0.2 -1,-0.1 0.865 104.8 38.2 -51.4 -39.2 16.5 3.6 7.2 53 53 A S T 34 S+ 0 0 87 1,-0.1 -1,-0.3 9,-0.1 -2,-0.1 -0.209 97.5 87.3-106.7 40.7 16.5 5.0 3.7 54 54 A M T <4 S- 0 0 32 -3,-2.2 -2,-0.2 2,-0.2 -1,-0.1 0.799 115.4 -57.1-103.4 -44.8 12.9 6.1 3.7 55 55 A G S < S+ 0 0 75 -4,-0.8 2,-0.5 1,-0.2 -3,-0.1 0.264 118.5 49.3-169.3 -38.5 13.1 9.6 5.2 56 56 A A - 0 0 83 -5,-0.5 2,-0.4 2,-0.0 -2,-0.2 -0.973 65.7-150.0-125.5 120.8 14.7 9.6 8.6 57 57 A T + 0 0 123 -2,-0.5 -5,-0.1 -4,-0.1 5,-0.1 -0.738 23.2 169.5 -91.1 132.2 18.1 7.8 9.3 58 58 A A - 0 0 35 3,-0.5 -2,-0.0 -2,-0.4 -6,-0.0 -0.992 45.0-125.2-143.0 149.1 18.7 6.5 12.8 59 59 A P S S+ 0 0 119 0, 0.0 3,-0.2 0, 0.0 -2,-0.0 0.481 108.6 59.8 -69.8 -1.2 21.3 4.2 14.5 60 60 A E S S+ 0 0 177 1,-0.2 2,-1.0 2,-0.1 3,-0.3 0.921 100.1 47.3 -90.4 -61.2 18.4 2.0 15.6 61 61 A A + 0 0 21 1,-0.2 -3,-0.5 2,-0.1 -1,-0.2 -0.744 68.1 125.1 -88.6 102.7 16.7 0.9 12.4 62 62 A Q S S+ 0 0 126 -2,-1.0 -10,-0.2 -3,-0.2 -1,-0.2 0.688 77.9 28.0-120.1 -57.0 19.4 -0.3 10.1 63 63 A R S S+ 0 0 237 -3,-0.3 2,-0.2 -13,-0.1 -2,-0.1 -0.225 92.7 129.1-103.8 42.2 18.6 -3.9 8.9 64 64 A E - 0 0 108 2,-0.0 2,-0.4 0, 0.0 -13,-0.3 -0.644 44.7-151.2 -97.5 155.1 14.8 -3.5 9.3 65 65 A T - 0 0 78 -2,-0.2 2,-0.2 -15,-0.2 -17,-0.0 -0.970 13.5-175.7-131.5 118.7 12.2 -4.4 6.6 66 66 A V E -B 49 0B 14 -17,-3.1 -17,-3.0 -2,-0.4 2,-0.4 -0.707 26.2-113.5-109.7 162.2 8.8 -2.6 6.4 67 67 A F E +B 48 0B 106 -2,-0.2 -33,-0.6 -19,-0.2 2,-0.3 -0.811 38.6 170.0 -98.8 132.7 5.8 -3.3 4.1 68 68 A V E -B 47 0B 0 -21,-2.6 -21,-1.2 -2,-0.4 2,-0.3 -0.866 35.5 -94.9-135.1 168.7 4.8 -0.7 1.5 69 69 A C >> - 0 0 1 -2,-0.3 4,-2.4 -24,-0.2 3,-2.3 -0.647 35.6-115.2 -87.7 141.5 2.5 -0.3 -1.5 70 70 A A H 3> S+ 0 0 24 -26,-1.8 4,-3.0 -2,-0.3 5,-0.4 0.876 116.1 62.1 -36.1 -57.3 3.8 -1.0 -5.0 71 71 A S H 3> S+ 0 0 69 1,-0.2 4,-0.9 2,-0.2 -1,-0.3 0.842 117.0 31.6 -39.9 -42.1 3.2 2.7 -5.9 72 72 A C H X> S+ 0 0 12 -3,-2.3 4,-3.0 2,-0.2 3,-0.8 0.952 111.1 60.5 -82.4 -58.8 5.8 3.5 -3.2 73 73 A N H 3X S+ 0 0 31 -4,-2.4 4,-2.2 1,-0.3 -2,-0.2 0.813 108.9 49.4 -37.7 -38.5 8.1 0.5 -3.4 74 74 A Q H 3X S+ 0 0 129 -4,-3.0 4,-1.9 -5,-0.3 -1,-0.3 0.917 112.2 45.4 -70.3 -44.8 8.7 1.6 -7.0 75 75 A T H << S+ 0 0 83 -4,-0.9 -2,-0.2 -3,-0.8 -1,-0.2 0.898 115.3 47.7 -65.8 -41.5 9.4 5.2 -6.1 76 76 A L H < S+ 0 0 45 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.944 108.7 54.0 -65.0 -49.5 11.7 4.2 -3.2 77 77 A S H < S+ 0 0 106 -4,-2.2 -2,-0.2 -5,-0.3 2,-0.2 0.955 110.9 47.2 -49.0 -62.0 13.6 1.6 -5.2 78 78 A K S < S- 0 0 126 -4,-1.9 2,-0.2 -5,-0.1 0, 0.0 -0.517 83.8-134.2 -83.8 152.0 14.5 4.1 -8.0 79 79 A S + 0 0 109 -2,-0.2 3,-0.1 1,-0.1 -3,-0.1 -0.625 52.7 98.3-103.4 163.5 15.9 7.6 -7.2 80 80 A G + 0 0 61 1,-0.5 -1,-0.1 -2,-0.2 3,-0.1 -0.599 63.3 48.8 166.8 -98.5 14.9 11.0 -8.7 81 81 A P S S- 0 0 102 0, 0.0 2,-0.7 0, 0.0 -1,-0.5 -0.182 94.1 -81.6 -69.7 165.4 12.5 13.5 -7.1 82 82 A S - 0 0 123 1,-0.1 -3,-0.0 -3,-0.1 0, 0.0 -0.588 53.1-110.5 -73.8 111.5 12.7 14.7 -3.5 83 83 A S 0 0 89 -2,-0.7 -1,-0.1 -3,-0.1 -4,-0.0 -0.139 360.0 360.0 -43.5 119.6 11.0 12.0 -1.3 84 84 A G 0 0 114 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.741 360.0 360.0-162.9 360.0 7.8 13.7 -0.1