==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAY-05 1X5S . COMPND 2 MOLECULE: COLD-INDUCIBLE RNA-BINDING PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.SATO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7613.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 14.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 137 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 170.4 -24.9 11.6 13.0 2 2 A S - 0 0 126 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.977 360.0-158.1-132.7 120.6 -25.7 12.5 9.4 3 3 A S - 0 0 111 -2,-0.4 3,-0.2 1,-0.2 0, 0.0 -0.678 4.8-156.0 -96.4 150.0 -23.2 13.5 6.8 4 4 A G S S+ 0 0 77 -2,-0.3 2,-1.0 1,-0.3 -1,-0.2 0.944 80.8 33.6 -85.7 -76.0 -24.0 15.5 3.7 5 5 A S - 0 0 113 1,-0.1 2,-1.2 2,-0.0 -1,-0.3 -0.734 69.2-169.9 -88.5 100.8 -21.4 14.8 1.0 6 6 A S + 0 0 117 -2,-1.0 2,-0.1 -3,-0.2 -1,-0.1 -0.693 54.0 74.6 -93.2 86.2 -20.4 11.1 1.4 7 7 A G - 0 0 59 -2,-1.2 -2,-0.0 1,-0.0 -1,-0.0 -0.409 41.7-177.9 166.8 112.6 -17.4 10.8 -1.0 8 8 A M - 0 0 161 -2,-0.1 -1,-0.0 2,-0.0 -2,-0.0 0.928 12.3-176.4 -84.1 -52.8 -13.8 12.0 -0.8 9 9 A A + 0 0 91 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.906 41.9 123.4 53.9 45.4 -12.5 10.8 -4.2 10 10 A S + 0 0 81 78,-0.0 2,-0.1 0, 0.0 -1,-0.1 -0.224 30.7 159.0-128.5 42.7 -9.0 11.9 -3.3 11 11 A D + 0 0 26 1,-0.1 53,-0.1 2,-0.1 54,-0.1 -0.432 18.5 179.9 -69.6 139.6 -7.0 8.7 -3.8 12 12 A E - 0 0 109 2,-0.4 -1,-0.1 78,-0.1 3,-0.1 0.617 55.8 -94.0-111.9 -23.9 -3.3 9.2 -4.3 13 13 A G S S+ 0 0 6 1,-0.5 48,-0.4 51,-0.1 2,-0.2 -0.168 93.9 96.7 138.1 -43.8 -2.3 5.5 -4.6 14 14 A K E -A 90 0A 46 76,-0.8 75,-2.0 46,-0.2 76,-1.0 -0.564 59.8-147.2 -80.7 141.6 -1.2 4.5 -1.1 15 15 A L E -A 88 0A 2 44,-0.4 2,-0.8 -2,-0.2 73,-0.2 -0.815 8.0-133.5-110.2 150.3 -3.7 2.7 1.1 16 16 A F E +A 87 0A 108 71,-3.0 71,-0.7 -2,-0.3 2,-0.4 -0.864 29.6 176.7-106.5 103.0 -4.0 2.9 4.9 17 17 A V E +AB 86 57A 2 40,-1.7 40,-1.2 -2,-0.8 2,-0.3 -0.873 2.0 179.8-108.7 138.0 -4.4 -0.6 6.4 18 18 A G E +AB 85 56A 21 67,-1.0 67,-0.7 -2,-0.4 38,-0.2 -0.921 54.4 39.9-134.7 160.5 -4.6 -1.3 10.2 19 19 A G S S+ 0 0 33 36,-1.1 64,-0.3 -2,-0.3 2,-0.3 0.800 70.3 174.1 74.7 29.0 -5.0 -4.2 12.5 20 20 A L - 0 0 15 35,-2.2 -1,-0.2 -3,-0.2 2,-0.0 -0.530 34.7-112.6 -73.2 131.5 -2.7 -6.4 10.4 21 21 A S > - 0 0 24 -2,-0.3 3,-1.9 58,-0.2 -1,-0.1 -0.346 24.2-114.9 -64.4 140.9 -1.9 -9.8 12.0 22 22 A F T 3 S+ 0 0 129 1,-0.3 -1,-0.1 32,-0.1 33,-0.1 0.865 119.4 57.1 -41.8 -45.2 1.7 -10.2 13.1 23 23 A D T 3 S+ 0 0 72 2,-0.1 -1,-0.3 5,-0.0 5,-0.2 0.861 81.3 105.1 -56.5 -37.3 2.0 -13.0 10.5 24 24 A T < + 0 0 2 -3,-1.9 2,-0.2 4,-0.1 -4,-0.0 -0.265 53.9 172.7 -50.6 110.7 1.0 -10.4 7.8 25 25 A N > - 0 0 74 -2,-0.2 4,-2.1 1,-0.0 5,-0.3 -0.687 51.9 -89.1-118.6 172.8 4.2 -9.6 6.0 26 26 A E H > S+ 0 0 76 -2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.818 129.7 45.1 -49.2 -33.2 5.2 -7.6 3.0 27 27 A Q H > S+ 0 0 132 2,-0.2 4,-3.0 3,-0.1 5,-0.3 0.977 108.4 51.9 -75.7 -61.3 4.6 -10.9 1.0 28 28 A S H > S+ 0 0 39 1,-0.2 4,-1.5 -5,-0.2 -2,-0.2 0.908 110.3 50.0 -39.7 -61.1 1.3 -12.0 2.5 29 29 A L H >X S+ 0 0 2 -4,-2.1 4,-3.0 1,-0.2 3,-1.2 0.929 112.3 46.9 -44.9 -58.4 -0.3 -8.6 1.8 30 30 A E H 3X S+ 0 0 86 -4,-1.2 4,-2.4 -5,-0.3 5,-0.3 0.926 105.5 59.0 -51.0 -51.1 0.9 -8.6 -1.8 31 31 A Q H 3< S+ 0 0 119 -4,-3.0 4,-0.4 2,-0.2 -1,-0.3 0.803 117.0 35.8 -49.5 -31.0 -0.3 -12.2 -2.3 32 32 A V H XX S+ 0 0 21 -4,-1.5 3,-1.9 -3,-1.2 4,-0.9 0.938 116.8 46.8 -87.4 -61.7 -3.7 -10.8 -1.3 33 33 A F H 3X S+ 0 0 0 -4,-3.0 4,-1.9 1,-0.3 -2,-0.2 0.679 107.5 64.9 -55.4 -15.8 -3.8 -7.3 -2.8 34 34 A S H 3< S+ 0 0 66 -4,-2.4 -1,-0.3 -5,-0.4 -2,-0.2 0.823 95.1 54.6 -77.1 -33.0 -2.5 -9.1 -5.9 35 35 A K H <4 S+ 0 0 146 -3,-1.9 -1,-0.2 -4,-0.4 -2,-0.2 0.724 112.3 45.3 -72.4 -21.6 -5.7 -11.1 -6.4 36 36 A Y H < S- 0 0 70 -4,-0.9 2,-0.3 1,-0.3 -2,-0.2 0.865 128.9 -45.2 -88.1 -42.7 -7.7 -7.9 -6.4 37 37 A G S < S- 0 0 18 -4,-1.9 -1,-0.3 33,-0.0 2,-0.1 -0.909 77.7 -43.1-167.2-166.8 -5.5 -5.9 -8.7 38 38 A Q - 0 0 135 -2,-0.3 2,-0.3 28,-0.1 32,-0.1 -0.459 49.1-154.9 -78.2 150.3 -2.0 -4.8 -9.7 39 39 A I - 0 0 35 22,-0.1 22,-0.2 -2,-0.1 3,-0.1 -0.927 20.1-172.1-127.5 152.1 0.5 -3.8 -7.0 40 40 A S - 0 0 68 20,-3.0 2,-0.3 1,-0.4 21,-0.2 0.772 68.1 -35.3-107.1 -43.8 3.6 -1.5 -7.0 41 41 A E E -C 60 0A 131 19,-2.2 19,-2.1 2,-0.0 -1,-0.4 -0.970 50.1-125.2-173.7 163.7 5.2 -2.2 -3.6 42 42 A V E -C 59 0A 21 -2,-0.3 2,-0.4 17,-0.3 17,-0.2 -0.924 13.0-167.1-124.4 149.1 4.4 -2.9 0.1 43 43 A V E -C 58 0A 66 15,-2.2 15,-2.0 -2,-0.3 2,-0.7 -0.929 0.7-170.9-140.1 113.1 5.5 -1.2 3.3 44 44 A V E -C 57 0A 13 -2,-0.4 13,-0.2 13,-0.2 -18,-0.1 -0.875 20.7-139.8-107.6 104.7 5.1 -2.7 6.8 45 45 A V - 0 0 41 11,-1.0 9,-2.6 -2,-0.7 10,-0.6 -0.329 27.5-179.9 -62.0 138.7 5.9 -0.2 9.5 46 46 A K - 0 0 86 7,-0.3 -1,-0.0 8,-0.2 2,-0.0 -0.867 27.7 -93.8-136.1 169.5 7.8 -1.6 12.5 47 47 A D - 0 0 42 -2,-0.3 -1,-0.1 1,-0.1 7,-0.1 -0.213 21.4-133.6 -77.9 172.6 9.2 -0.6 15.8 48 48 A R S S+ 0 0 219 3,-0.1 -1,-0.1 2,-0.1 -2,-0.0 0.692 100.9 42.6 -99.0 -25.6 12.8 0.6 16.4 49 49 A E S S+ 0 0 189 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.957 133.7 15.0 -83.6 -65.4 13.4 -1.5 19.5 50 50 A T S S- 0 0 99 3,-0.0 -2,-0.1 0, 0.0 -1,-0.0 0.791 85.2-154.8 -80.6 -29.8 11.9 -4.9 18.7 51 51 A Q + 0 0 135 1,-0.1 -3,-0.1 2,-0.0 -5,-0.0 0.919 55.4 118.0 53.7 48.0 11.7 -4.1 15.0 52 52 A R S S- 0 0 140 1,-0.1 2,-0.2 -7,-0.0 -1,-0.1 0.816 77.9 -47.9-104.6 -70.3 8.9 -6.6 14.6 53 53 A S - 0 0 31 1,-0.1 -7,-0.3 -28,-0.0 -8,-0.1 -0.781 28.1-150.2-175.0 126.9 5.7 -4.9 13.4 54 54 A R - 0 0 130 -9,-2.6 -8,-0.2 2,-0.3 -1,-0.1 0.912 57.2-103.1 -67.1 -43.8 3.7 -1.8 14.4 55 55 A G S S+ 0 0 19 -10,-0.6 -35,-2.2 1,-0.5 -36,-1.1 0.399 90.2 63.7 132.2 4.8 0.4 -3.3 13.4 56 56 A F E +B 18 0A 80 -11,-0.4 -11,-1.0 -38,-0.2 -1,-0.5 -0.976 50.5 174.2-151.1 161.2 -0.3 -1.5 10.1 57 57 A G E -BC 17 44A 0 -40,-1.2 -40,-1.7 -2,-0.3 2,-0.3 -0.808 19.2-128.7-151.3-168.4 1.1 -1.1 6.6 58 58 A F E - C 0 43A 40 -15,-2.0 -15,-2.2 -2,-0.2 2,-0.6 -0.945 6.4-150.3-158.8 133.8 0.6 0.3 3.1 59 59 A V E - C 0 42A 0 -2,-0.3 -44,-0.4 -17,-0.2 2,-0.3 -0.922 17.2-142.9-111.5 115.4 0.8 -1.1 -0.5 60 60 A T E - C 0 41A 47 -19,-2.1 -20,-3.0 -2,-0.6 -19,-2.2 -0.594 16.7-155.3 -77.9 130.0 1.8 1.3 -3.2 61 61 A F - 0 0 5 -48,-0.4 -22,-0.1 -2,-0.3 6,-0.1 -0.793 24.1-117.1-107.3 149.4 -0.1 0.8 -6.5 62 62 A E S S+ 0 0 65 -2,-0.3 2,-0.2 4,-0.1 -1,-0.1 0.940 94.7 3.5 -43.9 -66.0 1.1 1.8 -10.0 63 63 A N S > S- 0 0 100 1,-0.1 4,-1.2 -50,-0.1 -2,-0.1 -0.553 81.9-100.6-115.5-178.5 -1.6 4.3 -10.6 64 64 A I H >> S+ 0 0 81 2,-0.2 4,-1.9 -2,-0.2 3,-1.4 0.997 119.1 45.4 -66.5 -67.0 -4.5 5.8 -8.6 65 65 A D H 3> S+ 0 0 106 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.848 106.2 65.1 -45.0 -39.5 -7.4 3.8 -10.0 66 66 A D H 3> S+ 0 0 34 2,-0.2 4,-0.7 1,-0.2 -1,-0.3 0.912 110.7 34.6 -51.3 -47.7 -5.2 0.7 -9.6 67 67 A A H XX S+ 0 0 1 -3,-1.4 3,-2.3 -4,-1.2 4,-2.2 0.984 116.2 51.1 -72.1 -61.6 -5.2 1.1 -5.8 68 68 A K H 3X S+ 0 0 91 -4,-1.9 4,-1.9 1,-0.3 -2,-0.2 0.800 103.4 64.8 -46.4 -31.2 -8.7 2.4 -5.3 69 69 A D H 3< S+ 0 0 67 -4,-2.6 -1,-0.3 -5,-0.4 -2,-0.2 0.865 109.5 36.1 -61.9 -37.0 -9.8 -0.6 -7.4 70 70 A A H XX S+ 0 0 0 -3,-2.3 4,-2.8 -4,-0.7 3,-1.4 0.762 108.4 66.1 -86.4 -28.4 -8.5 -2.9 -4.7 71 71 A M H 3X S+ 0 0 29 -4,-2.2 4,-2.8 1,-0.3 -2,-0.2 0.920 94.5 57.4 -58.8 -46.2 -9.6 -0.6 -1.8 72 72 A M H 3< S+ 0 0 138 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.1 0.608 114.6 42.4 -61.6 -9.5 -13.3 -1.1 -2.6 73 73 A A H <4 S+ 0 0 21 -3,-1.4 -2,-0.2 -5,-0.1 -1,-0.2 0.840 121.1 34.2-101.4 -52.4 -12.5 -4.8 -2.1 74 74 A M H >< S+ 0 0 3 -4,-2.8 3,-1.6 3,-0.1 -3,-0.2 0.913 86.1 109.5 -70.9 -44.2 -10.3 -4.9 1.0 75 75 A N T 3< S+ 0 0 70 -4,-2.8 10,-0.1 -5,-0.3 12,-0.1 -0.049 102.2 1.4 -37.1 93.4 -12.0 -2.0 2.7 76 76 A G T 3 S+ 0 0 58 8,-0.3 -1,-0.3 1,-0.2 2,-0.2 0.862 104.7 136.9 88.7 40.9 -13.7 -4.0 5.4 77 77 A K < - 0 0 102 -3,-1.6 2,-0.5 7,-0.5 -1,-0.2 -0.564 53.9-119.1-111.4 177.0 -12.4 -7.5 4.5 78 78 A S > - 0 0 74 -2,-0.2 2,-1.1 5,-0.2 3,-0.6 -0.893 18.8-162.5-124.1 101.5 -11.0 -10.4 6.5 79 79 A V T 3 S- 0 0 9 -2,-0.5 -58,-0.2 1,-0.3 4,-0.1 -0.708 83.8 -20.4 -86.0 99.7 -7.4 -11.4 5.7 80 80 A D T 3 S- 0 0 106 -2,-1.1 -1,-0.3 1,-0.2 -2,-0.0 0.779 135.9 -42.1 73.7 27.4 -7.0 -14.9 7.1 81 81 A G S < S+ 0 0 70 -3,-0.6 -1,-0.2 1,-0.2 2,-0.1 0.812 109.2 131.8 88.0 33.5 -9.9 -14.4 9.4 82 82 A R - 0 0 84 2,-0.0 -1,-0.2 -61,-0.0 -2,-0.1 -0.427 57.2-136.1-107.0-176.6 -9.1 -10.8 10.5 83 83 A Q + 0 0 160 -64,-0.3 -5,-0.2 -2,-0.1 -63,-0.1 -0.135 47.9 145.8-134.2 37.5 -11.1 -7.6 10.7 84 84 A I - 0 0 5 -7,-0.2 -7,-0.5 -65,-0.1 2,-0.3 -0.279 35.5-139.9 -73.7 162.4 -8.7 -5.1 9.3 85 85 A R E -A 18 0A 183 -67,-0.7 -67,-1.0 -9,-0.2 2,-0.4 -0.866 7.5-154.4-124.4 158.4 -9.9 -2.1 7.2 86 86 A V E +A 17 0A 1 -2,-0.3 2,-0.3 -69,-0.2 -69,-0.2 -0.998 24.8 142.7-136.7 134.7 -8.6 -0.3 4.1 87 87 A D E -A 16 0A 60 -71,-0.7 -71,-3.0 -2,-0.4 2,-0.2 -0.954 58.4 -51.8-157.9 172.9 -9.1 3.3 2.9 88 88 A Q E -A 15 0A 43 -2,-0.3 -73,-0.2 -73,-0.2 -77,-0.0 -0.346 47.1-175.0 -56.3 115.0 -7.3 6.1 1.1 89 89 A A E - 0 0 38 -75,-2.0 2,-0.3 -2,-0.2 -74,-0.2 0.971 26.2-140.8 -77.3 -60.3 -4.0 6.6 3.0 90 90 A G E -A 14 0A 23 -76,-1.0 -76,-0.8 2,-0.0 2,-0.4 -0.986 32.0 -41.2 137.0-147.0 -2.7 9.7 1.2 91 91 A K + 0 0 136 -2,-0.3 2,-0.3 -78,-0.1 -78,-0.0 -0.962 55.4 153.7-130.2 115.8 0.7 10.9 0.1 92 92 A S + 0 0 90 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.897 17.0 127.6-145.6 111.5 3.9 10.4 2.1 93 93 A S - 0 0 102 -2,-0.3 2,-0.4 0, 0.0 -2,-0.0 -0.988 44.5-122.8-158.7 158.3 7.4 10.2 0.6 94 94 A D - 0 0 129 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.878 33.9-107.2-110.6 140.1 10.9 11.7 1.0 95 95 A N + 0 0 167 -2,-0.4 2,-0.3 1,-0.0 -1,-0.1 -0.176 42.8 172.6 -59.5 154.2 12.8 13.4 -1.8 96 96 A R - 0 0 204 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.947 13.6-169.9-165.9 143.6 15.8 11.6 -3.3 97 97 A S - 0 0 114 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.966 4.5-165.5-138.3 153.8 18.2 11.9 -6.2 98 98 A G - 0 0 41 -2,-0.3 -2,-0.0 1,-0.0 2,-0.0 -0.927 29.0 -90.5-138.3 162.9 20.9 9.7 -7.9 99 99 A P - 0 0 134 0, 0.0 3,-0.1 0, 0.0 -1,-0.0 -0.288 28.4-176.1 -69.8 155.4 23.8 10.0 -10.3 100 100 A S + 0 0 132 1,-0.3 2,-0.4 -2,-0.0 0, 0.0 0.726 65.1 44.5-115.9 -61.0 23.4 9.6 -14.0 101 101 A S 0 0 125 1,-0.1 -1,-0.3 0, 0.0 0, 0.0 -0.728 360.0 360.0 -93.7 138.9 26.8 9.7 -15.8 102 102 A G 0 0 128 -2,-0.4 -1,-0.1 -3,-0.1 0, 0.0 -0.036 360.0 360.0-155.0 360.0 29.7 7.8 -14.4