==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAY-05 1X5T . COMPND 2 MOLECULE: SPLICING FACTOR 3B SUBUNIT 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.SATO,K.KUWASAKO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU, . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6780.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 17.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 103 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -86.4 3.2 9.4 -11.0 2 2 A S - 0 0 79 1,-0.1 3,-0.1 3,-0.0 54,-0.1 -0.876 360.0-175.5-172.8 137.8 0.8 10.7 -8.3 3 3 A S S S+ 0 0 119 53,-0.3 2,-0.2 -2,-0.3 54,-0.1 0.814 74.6 1.5-103.5 -48.8 -2.5 12.5 -8.0 4 4 A G - 0 0 33 52,-0.5 -1,-0.1 51,-0.2 53,-0.0 -0.559 68.5-108.2-127.7-167.5 -3.0 13.0 -4.3 5 5 A S + 0 0 110 -2,-0.2 2,-1.8 -3,-0.1 79,-0.2 -0.190 59.7 138.5-120.1 39.2 -1.3 12.3 -1.0 6 6 A S + 0 0 6 49,-0.3 49,-1.2 50,-0.2 2,-0.1 -0.499 30.3 162.4 -85.2 69.9 -3.6 9.5 0.3 7 7 A G E -A 54 0A 6 -2,-1.8 76,-1.5 47,-0.2 77,-0.4 -0.451 26.8-143.6 -88.3 163.3 -0.9 7.3 1.7 8 8 A I E -AB 53 82A 0 45,-3.2 45,-2.2 74,-0.2 2,-0.5 -0.972 5.2-138.2-130.1 143.9 -1.3 4.4 4.2 9 9 A F E -AB 52 81A 58 72,-2.0 72,-1.8 -2,-0.4 2,-0.4 -0.864 18.3-167.7-103.9 130.6 0.9 3.2 7.0 10 10 A I E -AB 51 80A 0 41,-2.5 41,-2.7 -2,-0.5 2,-0.3 -0.940 6.7-179.6-119.5 138.9 1.5 -0.5 7.6 11 11 A G E +AB 50 79A 7 68,-0.8 68,-0.9 -2,-0.4 39,-0.2 -0.887 53.4 40.9-133.5 164.8 3.0 -2.1 10.6 12 12 A N + 0 0 74 37,-0.7 2,-0.4 -2,-0.3 38,-0.2 0.967 69.8 171.9 64.5 55.1 3.9 -5.6 11.9 13 13 A L - 0 0 6 36,-2.4 -1,-0.2 -3,-0.2 62,-0.0 -0.835 36.4-110.4-101.2 132.7 5.3 -6.9 8.6 14 14 A D > - 0 0 20 -2,-0.4 3,-1.8 62,-0.2 35,-0.1 -0.284 18.4-130.7 -59.6 139.1 7.0 -10.3 8.4 15 15 A P T 3 S+ 0 0 66 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.491 105.8 66.5 -69.7 -2.0 10.8 -10.1 7.7 16 16 A E T 3 S+ 0 0 132 58,-0.2 2,-0.2 2,-0.1 -2,-0.1 0.492 82.9 95.1 -96.1 -6.7 10.2 -12.7 4.9 17 17 A I < - 0 0 17 -3,-1.8 2,-0.3 57,-0.1 -4,-0.0 -0.590 58.7-159.1 -87.2 148.1 8.1 -10.3 2.9 18 18 A D > - 0 0 99 -2,-0.2 4,-1.9 1,-0.1 3,-0.3 -0.851 34.7-104.4-124.8 161.0 9.6 -8.2 0.0 19 19 A E H > S+ 0 0 60 -2,-0.3 4,-2.2 1,-0.2 5,-0.1 0.856 121.2 57.3 -49.4 -38.5 8.5 -5.0 -1.8 20 20 A K H > S+ 0 0 167 2,-0.2 4,-1.5 1,-0.1 -1,-0.2 0.951 108.6 44.2 -58.9 -52.5 7.5 -7.2 -4.7 21 21 A L H >> S+ 0 0 76 -3,-0.3 4,-2.9 2,-0.2 3,-1.0 0.987 112.2 49.8 -56.3 -66.8 5.1 -9.3 -2.6 22 22 A L H 3X>S+ 0 0 2 -4,-1.9 4,-2.9 1,-0.3 5,-0.5 0.888 104.3 60.7 -37.8 -57.3 3.5 -6.4 -0.7 23 23 A Y H 3X5S+ 0 0 93 -4,-2.2 4,-2.4 -5,-0.2 -1,-0.3 0.882 116.8 31.4 -38.5 -53.5 2.9 -4.5 -4.0 24 24 A D H X5S+ 0 0 0 -4,-2.9 3,-1.3 -5,-0.3 4,-1.1 0.814 104.2 75.5 -93.5 -38.1 -2.2 -5.0 -1.7 27 27 A S H 3< - 0 0 38 -2,-0.3 4,-0.8 1,-0.1 -1,-0.0 -0.428 24.1-131.9 -70.7 140.7 17.0 -0.7 10.6 42 42 A P T 4 S+ 0 0 122 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.510 103.9 50.4 -69.7 -3.5 20.1 1.5 10.1 43 43 A D T 4 S+ 0 0 143 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.876 128.8 8.8 -96.8 -72.0 22.1 -1.4 11.6 44 44 A T T 4 S- 0 0 104 3,-0.1 -4,-0.0 1,-0.0 0, 0.0 0.853 81.3-152.1 -80.2 -37.3 21.2 -4.6 9.9 45 45 A G < + 0 0 35 -4,-0.8 -5,-0.1 1,-0.0 3,-0.1 0.841 62.0 110.9 67.3 33.5 19.1 -3.0 7.2 46 46 A N S S- 0 0 100 1,-0.2 2,-0.2 -7,-0.0 -6,-0.0 0.841 87.5 -32.3-101.5 -53.5 17.0 -6.2 6.8 47 47 A S - 0 0 31 1,-0.1 -7,-0.3 -31,-0.0 -1,-0.2 -0.735 40.1-166.7-174.8 121.1 13.6 -5.2 8.1 48 48 A K - 0 0 88 -9,-2.3 -8,-0.2 2,-0.3 -1,-0.1 0.965 52.3-105.6 -75.6 -56.6 12.4 -2.8 10.8 49 49 A G S S+ 0 0 19 -10,-0.9 -36,-2.4 1,-0.5 -37,-0.7 0.145 89.1 69.2 151.0 -22.0 8.8 -3.9 11.1 50 50 A Y E -A 11 0A 91 -11,-0.4 -11,-1.8 -39,-0.2 -1,-0.5 -0.910 54.6-169.5-125.0 152.2 6.7 -1.2 9.4 51 51 A A E -AC 10 38A 0 -41,-2.7 -41,-2.5 -2,-0.3 2,-0.4 -0.856 15.7-131.1-134.3 169.1 6.3 -0.1 5.8 52 52 A F E +AC 9 37A 78 -15,-3.2 -15,-2.1 -2,-0.3 2,-0.4 -0.987 25.0 171.0-128.6 128.5 4.8 2.8 3.8 53 53 A I E -A 8 0A 2 -45,-2.2 -45,-3.2 -2,-0.4 2,-0.4 -0.998 16.0-154.7-138.5 140.2 2.5 2.4 0.8 54 54 A N E -A 7 0A 56 -2,-0.4 -21,-1.7 -20,-0.3 -20,-0.5 -0.946 10.6-152.5-117.9 133.7 0.5 4.9 -1.2 55 55 A F B -D 32 0B 0 -49,-1.2 -49,-0.3 -2,-0.4 -51,-0.2 -0.468 29.6-106.6 -96.8 170.7 -2.6 4.1 -3.3 56 56 A A S S- 0 0 33 -25,-2.0 -52,-0.5 -2,-0.1 -53,-0.3 0.964 94.9 -8.7 -60.1 -55.3 -4.1 5.8 -6.3 57 57 A S S >> S- 0 0 67 -26,-0.2 4,-1.5 -54,-0.1 3,-0.7 -0.835 74.6 -97.1-137.8 174.8 -7.0 7.4 -4.5 58 58 A F H 3> S+ 0 0 124 -2,-0.3 4,-3.0 1,-0.2 5,-0.2 0.895 115.6 68.7 -61.2 -41.5 -8.7 7.3 -1.1 59 59 A D H 3> S+ 0 0 143 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.855 104.2 44.3 -45.3 -40.7 -11.3 4.9 -2.4 60 60 A A H <> S+ 0 0 9 -3,-0.7 4,-1.6 2,-0.2 -1,-0.2 0.922 110.9 51.8 -72.1 -46.1 -8.5 2.3 -2.6 61 61 A S H X S+ 0 0 0 -4,-1.5 4,-2.3 1,-0.2 5,-0.2 0.864 105.3 58.4 -58.8 -37.2 -7.1 3.2 0.8 62 62 A D H X S+ 0 0 83 -4,-3.0 4,-1.6 1,-0.2 -1,-0.2 0.948 101.3 53.9 -58.1 -52.0 -10.5 2.8 2.4 63 63 A A H X S+ 0 0 36 -4,-1.3 4,-2.9 -5,-0.2 5,-0.4 0.929 112.7 43.8 -48.2 -54.3 -10.9 -0.8 1.2 64 64 A A H <>S+ 0 0 0 -4,-1.6 5,-2.0 1,-0.2 4,-0.3 0.985 110.6 51.2 -56.1 -66.2 -7.6 -1.8 2.8 65 65 A I H <5S+ 0 0 38 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.741 115.5 48.6 -44.6 -24.1 -8.1 0.0 6.1 66 66 A E H <5S+ 0 0 152 -4,-1.6 -1,-0.3 -3,-0.4 -2,-0.2 0.920 136.0 4.3 -83.4 -50.3 -11.4 -1.8 6.1 67 67 A A T X5S+ 0 0 45 -4,-2.9 4,-0.9 -5,-0.2 -3,-0.2 0.862 129.2 55.0 -99.7 -58.4 -10.1 -5.3 5.3 68 68 A M T 45S+ 0 0 4 -5,-0.4 2,-2.0 -4,-0.3 3,-0.5 0.794 85.0 98.3 -46.9 -30.4 -6.3 -5.1 5.3 69 69 A N T 4 -E 76 0C 24 3,-1.4 3,-3.0 -2,-1.0 -1,-0.0 -0.330 51.0 -36.3 -88.9 174.3 -0.2 -11.8 7.1 74 74 A C T 3 S- 0 0 46 1,-0.3 -1,-0.2 -2,-0.1 -58,-0.2 0.031 121.8 -45.2 -32.2 91.1 2.7 -14.2 6.9 75 75 A N T 3 S+ 0 0 129 -3,-0.2 -1,-0.3 1,-0.1 -3,-0.1 0.864 130.2 93.3 39.4 47.6 2.5 -15.2 10.6 76 76 A R E < S-E 73 0C 101 -3,-3.0 -3,-1.4 -62,-0.1 2,-0.7 -0.685 74.3-132.8-170.4 109.8 2.1 -11.5 11.4 77 77 A P E -E 72 0C 56 0, 0.0 -5,-0.2 0, 0.0 -6,-0.1 -0.537 29.3-151.8 -69.7 108.3 -1.1 -9.4 11.8 78 78 A I - 0 0 0 -7,-1.5 -8,-0.8 -2,-0.7 2,-0.4 -0.322 3.5-150.4 -77.8 163.2 -0.7 -6.3 9.7 79 79 A T E -B 11 0A 65 -68,-0.9 -68,-0.8 -10,-0.2 2,-0.5 -0.924 2.7-158.9-142.0 113.5 -2.4 -3.0 10.6 80 80 A V E +B 10 0A 4 -2,-0.4 2,-0.3 -16,-0.2 -70,-0.2 -0.801 20.6 163.7 -95.3 126.5 -3.5 -0.4 8.0 81 81 A S E -B 9 0A 56 -72,-1.8 -72,-2.0 -2,-0.5 -2,-0.1 -0.966 47.5 -95.0-146.3 125.4 -4.0 3.2 9.2 82 82 A Y E -B 8 0A 79 -2,-0.3 -74,-0.2 -74,-0.2 3,-0.1 -0.049 32.2-136.6 -38.2 123.0 -4.2 6.4 7.2 83 83 A A S S- 0 0 50 -76,-1.5 2,-0.3 1,-0.2 -1,-0.1 0.930 81.9 -3.9 -50.8 -52.2 -0.7 7.9 7.3 84 84 A F - 0 0 173 -77,-0.4 2,-0.3 -79,-0.2 -1,-0.2 -0.998 65.0-173.7-147.9 142.8 -2.1 11.4 8.0 85 85 A K - 0 0 166 -2,-0.3 2,-0.6 -3,-0.1 -79,-0.0 -0.998 17.4-140.0-139.8 141.5 -5.5 13.0 8.2 86 86 A K - 0 0 164 -2,-0.3 -2,-0.0 1,-0.0 0, 0.0 -0.892 32.2-113.1-105.3 117.4 -6.8 16.5 8.6 87 87 A D - 0 0 141 -2,-0.6 2,-0.1 1,-0.1 -1,-0.0 -0.207 37.6-146.2 -48.0 121.5 -9.7 17.1 11.0 88 88 A S - 0 0 111 2,-0.1 2,-0.4 1,-0.1 -1,-0.1 -0.430 17.1-100.0 -89.9 166.9 -12.7 18.2 8.9 89 89 A K + 0 0 202 -2,-0.1 -1,-0.1 1,-0.0 0, 0.0 -0.716 69.9 105.7 -90.4 135.3 -15.4 20.6 9.8 90 90 A G + 0 0 63 -2,-0.4 -2,-0.1 2,-0.1 -1,-0.0 0.091 24.3 171.4 153.9 85.6 -18.8 19.2 10.9 91 91 A S - 0 0 129 1,-0.0 -2,-0.0 3,-0.0 0, 0.0 0.958 42.7-135.5 -73.8 -53.9 -20.0 19.1 14.5 92 92 A G - 0 0 51 2,-0.1 2,-0.7 0, 0.0 -2,-0.1 -0.003 25.6 -66.0 107.7 146.2 -23.6 18.0 13.8 93 93 A P + 0 0 144 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.536 65.5 162.5 -69.7 106.7 -27.1 19.0 15.0 94 94 A S - 0 0 119 -2,-0.7 -2,-0.1 1,-0.1 -3,-0.0 -0.917 30.8-172.9-127.8 153.9 -27.3 18.1 18.7 95 95 A S 0 0 127 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.757 360.0 360.0-110.2 -45.5 -29.5 19.2 21.6 96 96 A G 0 0 118 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.415 360.0 360.0 61.0 360.0 -27.9 17.7 24.7