==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 16-MAY-05 1X5U . COMPND 2 MOLECULE: SPLICING FACTOR 3B SUBUNIT 4 (SPLICEOSOME . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.SATO,K.KUWASAKO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU, . 105 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7330.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 19.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -67.0 18.9 -12.3 -9.1 2 2 A S + 0 0 139 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.186 360.0 123.6 -45.4 102.9 20.7 -12.4 -5.8 3 3 A S + 0 0 121 -2,-0.2 -1,-0.0 1,-0.1 0, 0.0 -0.953 12.1 129.2-156.8 172.3 21.8 -8.8 -5.5 4 4 A G + 0 0 73 -2,-0.3 3,-0.1 2,-0.0 -1,-0.1 0.532 27.7 129.9 133.7 65.5 21.7 -5.7 -3.3 5 5 A S S S+ 0 0 123 1,-0.3 2,-0.5 0, 0.0 -2,-0.0 0.830 77.8 21.9-103.7 -55.8 25.0 -4.0 -2.5 6 6 A S S S+ 0 0 125 2,-0.0 -1,-0.3 0, 0.0 -2,-0.0 -0.931 80.5 131.9-122.3 108.5 24.6 -0.3 -3.3 7 7 A G - 0 0 64 -2,-0.5 0, 0.0 -3,-0.1 0, 0.0 -0.989 46.8-115.7-157.1 145.8 21.0 1.1 -3.4 8 8 A P - 0 0 121 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.007 14.1-138.5 -69.8 179.8 19.0 4.0 -2.1 9 9 A I - 0 0 124 37,-0.0 35,-0.0 35,-0.0 3,-0.0 0.634 15.5-172.1-113.5 -26.9 16.1 3.8 0.4 10 10 A S + 0 0 75 1,-0.2 3,-0.5 2,-0.1 2,-0.3 0.782 34.4 144.5 33.7 35.5 13.7 6.3 -1.2 11 11 A E + 0 0 86 1,-0.2 -1,-0.2 6,-0.0 3,-0.1 -0.221 28.8 106.9 -94.3 43.4 11.7 5.8 2.0 12 12 A R + 0 0 212 -2,-0.3 2,-1.7 1,-0.2 -1,-0.2 0.903 59.9 71.3 -85.4 -48.0 10.5 9.4 2.1 13 13 A N > + 0 0 44 -3,-0.5 4,-0.7 1,-0.2 -1,-0.2 -0.537 57.1 168.8 -74.0 87.6 6.9 8.9 1.1 14 14 A Q T >4 S+ 0 0 91 -2,-1.7 3,-0.9 2,-0.2 78,-0.6 0.939 73.6 54.3 -65.5 -48.8 5.6 7.2 4.3 15 15 A D T 34 S+ 0 0 47 1,-0.3 77,-0.3 -3,-0.2 -1,-0.2 0.941 107.7 48.9 -50.1 -55.3 2.0 7.5 3.3 16 16 A A T 34 S+ 0 0 3 49,-0.1 48,-1.9 75,-0.1 -1,-0.3 0.731 105.8 78.7 -58.5 -21.6 2.5 5.8 -0.0 17 17 A T E << S-A 63 0A 4 -3,-0.9 75,-1.4 -4,-0.7 2,-0.3 -0.594 76.2-138.2 -90.5 152.0 4.3 3.1 2.0 18 18 A V E -AB 62 91A 0 44,-1.0 44,-1.1 -2,-0.2 2,-0.9 -0.849 10.6-128.5-111.8 147.0 2.6 0.4 4.0 19 19 A Y E -AB 61 90A 60 71,-2.7 71,-0.5 -2,-0.3 2,-0.5 -0.810 25.9-167.7 -97.3 103.0 3.5 -0.9 7.4 20 20 A V E +AB 60 89A 0 40,-1.9 40,-1.5 -2,-0.9 2,-0.4 -0.787 8.7 177.8 -93.9 126.6 3.8 -4.7 7.3 21 21 A G E + B 0 88A 18 67,-2.3 67,-1.1 -2,-0.5 38,-0.2 -0.992 53.1 30.3-133.4 132.3 4.0 -6.5 10.6 22 22 A G + 0 0 28 -2,-0.4 2,-0.4 65,-0.2 -1,-0.2 0.925 66.9 173.1 91.1 59.8 4.1 -10.2 11.4 23 23 A L - 0 0 9 35,-2.1 -1,-0.2 -3,-0.2 60,-0.0 -0.858 27.4-126.0-104.5 134.0 6.0 -11.8 8.5 24 24 A D > - 0 0 48 -2,-0.4 3,-0.7 61,-0.1 34,-0.1 -0.247 31.4-101.7 -71.1 162.2 7.0 -15.4 8.5 25 25 A E T 3 S+ 0 0 150 1,-0.3 -1,-0.1 58,-0.1 31,-0.1 0.879 122.4 61.2 -50.8 -41.8 10.6 -16.5 7.8 26 26 A K T 3 S+ 0 0 115 57,-0.1 -1,-0.3 2,-0.0 57,-0.0 0.913 81.5 102.5 -52.4 -47.3 9.6 -17.5 4.3 27 27 A V < - 0 0 3 -3,-0.7 2,-0.3 56,-0.1 29,-0.1 -0.001 55.7-174.2 -39.1 139.9 8.6 -13.8 3.6 28 28 A S >> - 0 0 56 1,-0.1 4,-1.5 28,-0.0 3,-0.7 -0.903 37.1-111.6-138.7 166.2 11.3 -12.0 1.5 29 29 A E H 3> S+ 0 0 83 -2,-0.3 4,-1.2 1,-0.2 3,-0.4 0.976 119.5 43.0 -61.4 -57.9 12.0 -8.5 0.2 30 30 A P H 3> S+ 0 0 101 0, 0.0 4,-0.7 0, 0.0 -1,-0.2 0.425 109.1 66.2 -69.8 3.2 11.5 -9.4 -3.4 31 31 A L H <> S+ 0 0 47 -3,-0.7 4,-2.6 2,-0.1 5,-0.2 0.892 96.2 48.0 -90.1 -49.5 8.4 -11.3 -2.3 32 32 A L H X S+ 0 0 1 -4,-1.5 4,-2.7 -3,-0.4 5,-0.3 0.894 104.3 64.8 -58.7 -41.7 6.2 -8.5 -1.0 33 33 A W H >X S+ 0 0 88 -4,-1.2 4,-2.5 2,-0.2 3,-0.6 0.949 113.5 28.6 -44.9 -70.3 6.9 -6.4 -4.2 34 34 A E H 3X S+ 0 0 145 -4,-0.7 4,-0.8 1,-0.2 -1,-0.2 0.913 119.2 57.6 -59.9 -44.7 5.1 -8.8 -6.6 35 35 A L H 3< S+ 0 0 45 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.790 116.3 37.1 -57.1 -27.9 2.8 -10.0 -3.8 36 36 A F H XX S+ 0 0 1 -4,-2.7 3,-2.5 -3,-0.6 4,-1.5 0.733 91.7 88.1 -94.7 -28.5 1.7 -6.4 -3.5 37 37 A L H 3< S+ 0 0 81 -4,-2.5 -2,-0.2 -5,-0.3 -1,-0.1 0.796 80.5 67.6 -39.3 -34.0 1.9 -5.5 -7.2 38 38 A Q T 3< S+ 0 0 124 -4,-0.8 -1,-0.3 1,-0.2 -2,-0.1 0.909 103.1 42.2 -55.7 -45.1 -1.7 -6.7 -7.2 39 39 A A T <4 S- 0 0 10 -3,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.910 133.7 -38.6 -69.3 -43.7 -2.8 -3.7 -5.1 40 40 A G S < S- 0 0 8 -4,-1.5 2,-2.1 32,-0.1 -1,-0.2 -0.980 79.0 -56.6-169.7 176.6 -0.6 -1.3 -7.0 41 41 A P - 0 0 61 0, 0.0 24,-0.9 0, 0.0 -4,-0.1 -0.446 57.9-146.1 -69.7 79.8 2.7 -0.5 -8.8 42 42 A V E -C 64 0A 7 -2,-2.1 22,-0.3 -9,-0.3 3,-0.1 -0.245 12.9-165.8 -51.0 123.4 5.0 -1.3 -5.9 43 43 A V E - 0 0 47 20,-2.7 2,-0.3 1,-0.3 21,-0.2 0.956 61.9 -25.9 -77.7 -55.4 8.0 1.0 -6.1 44 44 A N E -C 63 0A 54 19,-1.4 19,-2.3 -34,-0.1 2,-0.4 -0.989 57.0-121.6-159.0 156.8 10.4 -0.7 -3.7 45 45 A T E -C 62 0A 13 -2,-0.3 2,-0.4 17,-0.2 17,-0.2 -0.832 19.3-162.7-106.9 143.0 10.4 -3.0 -0.7 46 46 A H E +C 61 0A 58 15,-2.4 15,-1.5 -2,-0.4 -37,-0.0 -0.986 13.6 167.9-128.7 126.1 11.9 -2.3 2.7 47 47 A M - 0 0 10 -2,-0.4 2,-0.3 13,-0.2 13,-0.2 -0.883 25.5-142.0-141.8 106.6 12.7 -4.8 5.4 48 48 A P - 0 0 25 0, 0.0 9,-1.8 0, 0.0 2,-0.4 -0.495 17.6-143.2 -69.7 126.5 14.9 -3.9 8.5 49 49 A K B -D 56 0B 120 -2,-0.3 7,-0.3 7,-0.2 -2,-0.0 -0.752 18.2-115.2 -94.5 137.0 17.2 -6.7 9.5 50 50 A D - 0 0 49 5,-2.3 -1,-0.1 -2,-0.4 6,-0.1 0.048 12.1-136.1 -58.2 174.8 17.9 -7.4 13.2 51 51 A R S S+ 0 0 226 3,-0.1 -1,-0.1 2,-0.1 -2,-0.0 0.724 100.3 41.1-105.5 -33.5 21.4 -6.9 14.7 52 52 A V S S+ 0 0 112 3,-0.1 -2,-0.0 1,-0.1 0, 0.0 0.862 134.1 21.2 -82.6 -39.7 21.7 -10.0 16.8 53 53 A T S S- 0 0 87 2,-0.2 3,-0.1 3,-0.0 -2,-0.1 0.786 91.2-140.6 -97.0 -36.1 20.1 -12.4 14.3 54 54 A G + 0 0 41 1,-0.3 2,-0.3 0, 0.0 -3,-0.1 0.739 63.0 111.3 80.2 23.5 20.7 -10.3 11.1 55 55 A Q S S- 0 0 95 1,-0.1 -5,-2.3 -7,-0.1 -1,-0.3 -0.938 80.7 -67.9-130.5 152.7 17.3 -11.2 9.7 56 56 A H B -D 49 0B 31 -2,-0.3 -7,-0.2 -7,-0.3 -1,-0.1 0.073 42.3-127.0 -34.0 141.2 14.1 -9.3 9.0 57 57 A Q - 0 0 99 -9,-1.8 -1,-0.2 2,-0.5 -35,-0.2 0.093 49.5-100.9 -83.9 24.2 12.4 -8.2 12.2 58 58 A G S S+ 0 0 15 1,-0.1 -35,-2.1 -10,-0.1 2,-0.4 0.016 102.9 88.6 82.2 -31.2 9.2 -9.8 11.0 59 59 A Y + 0 0 59 -38,-0.2 -2,-0.5 -37,-0.2 -38,-0.3 -0.831 52.8 164.1-104.2 138.8 7.8 -6.4 10.0 60 60 A G E -A 20 0A 0 -40,-1.5 -40,-1.9 -2,-0.4 2,-0.3 -0.482 22.8-128.2-130.9-158.4 8.4 -4.9 6.6 61 61 A F E -AC 19 46A 27 -15,-1.5 -15,-2.4 -42,-0.2 2,-0.4 -0.987 0.8-151.2-159.9 152.1 7.2 -2.1 4.3 62 62 A V E -AC 18 45A 0 -44,-1.1 -44,-1.0 -2,-0.3 2,-0.8 -0.900 11.2-153.7-133.9 105.3 6.0 -1.6 0.7 63 63 A E E -AC 17 44A 10 -19,-2.3 -20,-2.7 -2,-0.4 -19,-1.4 -0.675 18.9-159.9 -81.0 109.6 6.6 1.8 -0.9 64 64 A F E - C 0 42A 0 -48,-1.9 -22,-0.2 -2,-0.8 3,-0.1 -0.437 23.8-123.4 -86.3 162.5 3.9 2.3 -3.6 65 65 A L S S+ 0 0 116 -24,-0.9 2,-0.4 1,-0.2 -1,-0.1 0.917 96.8 28.7 -70.6 -44.7 4.1 4.7 -6.6 66 66 A S S >> S- 0 0 43 1,-0.1 4,-1.0 -50,-0.1 3,-0.8 -0.941 77.4-127.2-122.0 142.0 0.8 6.4 -5.7 67 67 A E H >> S+ 0 0 113 -2,-0.4 3,-1.6 1,-0.3 4,-1.3 0.916 110.1 60.4 -48.0 -51.0 -0.8 6.9 -2.3 68 68 A E H 3> S+ 0 0 143 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.881 96.3 61.5 -45.0 -45.9 -4.1 5.5 -3.5 69 69 A D H <> S+ 0 0 21 -3,-0.8 4,-1.6 1,-0.2 -1,-0.3 0.872 103.5 51.6 -50.2 -40.9 -2.2 2.3 -4.3 70 70 A A H XX S+ 0 0 0 -3,-1.6 4,-2.7 -4,-1.0 3,-1.3 0.994 107.3 47.7 -60.8 -66.7 -1.4 2.0 -0.6 71 71 A D H 3X S+ 0 0 109 -4,-1.3 4,-0.7 1,-0.3 -1,-0.2 0.860 113.3 51.4 -42.4 -43.6 -4.9 2.4 0.8 72 72 A Y H 3X S+ 0 0 129 -4,-2.4 4,-0.8 -5,-0.2 -1,-0.3 0.851 112.9 44.7 -64.8 -35.0 -6.1 -0.2 -1.8 73 73 A A H -B 18 0A 39 -2,-0.3 3,-1.2 -73,-0.2 -73,-0.2 -0.305 37.2-142.7 -54.0 119.4 -0.6 3.5 6.8 92 92 A A T 3 S+ 0 0 18 -75,-1.4 4,-0.3 -78,-0.6 3,-0.3 0.846 102.7 57.2 -52.8 -36.2 3.0 4.1 7.7 93 93 A S T > S+ 0 0 48 -76,-0.3 2,-2.1 1,-0.3 3,-0.9 0.820 89.7 75.1 -65.7 -31.3 2.1 7.7 8.5 94 94 A A T < S+ 0 0 75 -3,-1.2 -1,-0.3 1,-0.2 3,-0.1 -0.243 82.9 73.0 -78.0 51.0 -0.5 6.4 11.0 95 95 A H T 3 S+ 0 0 84 -2,-2.1 2,-0.4 1,-0.4 -1,-0.2 0.597 98.2 25.0-128.9 -42.9 2.2 5.6 13.5 96 96 A N S < S- 0 0 141 -3,-0.9 -1,-0.4 -4,-0.3 2,-0.4 -0.979 81.2-107.9-132.4 144.0 3.5 8.9 14.9 97 97 A K + 0 0 181 -2,-0.4 2,-0.3 -3,-0.1 -3,-0.1 -0.548 58.4 136.6 -71.9 122.7 1.9 12.3 15.3 98 98 A N - 0 0 107 -2,-0.4 2,-0.4 -5,-0.1 -2,-0.0 -0.972 32.5-161.3-165.0 151.0 3.5 14.8 12.8 99 99 A L + 0 0 156 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.989 19.1 153.3-143.3 131.1 2.5 17.5 10.4 100 100 A S + 0 0 99 -2,-0.4 -2,-0.0 1,-0.0 3,-0.0 -0.956 11.5 167.2-158.5 136.3 4.3 19.0 7.4 101 101 A G + 0 0 67 -2,-0.3 -1,-0.0 2,-0.1 -2,-0.0 -0.377 10.8 158.4-151.1 65.7 3.4 20.8 4.2 102 102 A P + 0 0 122 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.419 29.8 153.9 -69.7 3.7 6.3 22.5 2.5 103 103 A S - 0 0 108 1,-0.1 -2,-0.1 2,-0.1 0, 0.0 0.077 40.6-148.9 -34.3 141.7 4.3 22.3 -0.7 104 104 A S 0 0 129 1,-0.1 -1,-0.1 0, 0.0 -3,-0.0 0.837 360.0 360.0 -87.0 -38.0 5.3 25.0 -3.2 105 105 A G 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.278 360.0 360.0 61.8 360.0 1.9 25.4 -4.8