==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=23-JUL-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 08-FEB-10 2X5G . COMPND 2 MOLECULE: ORF 131; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS RUDIVIRUS 1; . AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,J.H.NAISMITH, . 91 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6673.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 64.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 16.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 33.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 88 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.0 25.6 12.6 3.9 2 3 A S > - 0 0 58 1,-0.1 4,-2.1 4,-0.0 5,-0.2 -0.263 360.0-106.9 -68.3 165.0 28.8 12.3 1.9 3 4 A L H > S+ 0 0 16 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.898 122.7 52.6 -53.8 -46.5 31.2 15.2 1.1 4 5 A K H > S+ 0 0 93 2,-0.2 4,-3.5 1,-0.2 -1,-0.2 0.917 107.2 51.9 -59.6 -46.0 30.0 15.1 -2.5 5 6 A E H > S+ 0 0 96 2,-0.2 4,-3.1 1,-0.2 -2,-0.2 0.912 113.2 45.4 -56.5 -44.8 26.3 15.3 -1.4 6 7 A I H X S+ 0 0 9 -4,-2.1 4,-3.0 2,-0.2 5,-0.3 0.941 113.3 48.7 -64.2 -47.7 27.2 18.3 0.7 7 8 A I H X S+ 0 0 4 -4,-3.2 4,-2.2 2,-0.2 -2,-0.2 0.949 114.8 45.9 -56.6 -50.0 29.2 19.9 -2.1 8 9 A D H X S+ 0 0 58 -4,-3.5 4,-2.3 1,-0.2 5,-0.2 0.951 114.0 48.2 -60.5 -48.8 26.3 19.3 -4.5 9 10 A E H X S+ 0 0 91 -4,-3.1 4,-1.9 1,-0.2 -1,-0.2 0.900 112.8 47.1 -58.5 -43.4 23.7 20.6 -2.0 10 11 A L H X S+ 0 0 4 -4,-3.0 4,-2.8 2,-0.2 -1,-0.2 0.854 111.2 52.8 -69.1 -34.6 25.7 23.8 -1.2 11 12 A G H X S+ 0 0 11 -4,-2.2 4,-1.1 -5,-0.3 -2,-0.2 0.939 110.7 45.8 -62.7 -50.2 26.3 24.5 -4.9 12 13 A K H X S+ 0 0 141 -4,-2.3 4,-2.3 2,-0.2 -2,-0.2 0.871 116.3 46.8 -60.6 -38.8 22.6 24.2 -5.7 13 14 A Q H X S+ 0 0 73 -4,-1.9 4,-1.4 -5,-0.2 5,-0.2 0.951 108.9 52.0 -72.1 -49.9 21.7 26.5 -2.7 14 15 A A H X>S+ 0 0 0 -4,-2.8 5,-0.6 1,-0.2 4,-0.5 0.722 114.8 46.0 -57.3 -25.5 24.4 29.2 -3.4 15 16 A K H <5S+ 0 0 144 -4,-1.1 3,-0.4 -5,-0.2 -2,-0.2 0.916 109.8 49.9 -83.1 -52.0 23.0 29.3 -7.0 16 17 A E H <5S+ 0 0 141 -4,-2.3 -2,-0.2 1,-0.2 -3,-0.1 0.681 126.0 29.8 -58.5 -19.8 19.2 29.5 -6.2 17 18 A Q H <5S- 0 0 97 -4,-1.4 -1,-0.2 2,-0.2 -2,-0.2 0.486 96.0-130.1-123.2 -8.8 19.9 32.2 -3.7 18 19 A N T <5S+ 0 0 138 -4,-0.5 2,-0.3 -3,-0.4 -3,-0.2 0.883 73.4 90.7 55.6 43.3 22.9 34.1 -5.0 19 20 A K S - 0 0 27 -2,-1.3 3,-1.4 8,-0.1 46,-0.1 -0.510 32.6-111.3 -67.9 122.6 34.8 14.9 10.1 28 29 A K T 3 S+ 0 0 202 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.0 -0.272 92.3 17.1 -61.8 131.9 35.0 11.9 12.5 29 30 A G T 3 S+ 0 0 50 1,-0.3 2,-0.3 2,-0.0 -1,-0.2 0.288 78.8 140.4 100.0 -9.3 37.0 12.4 15.7 30 31 A I < - 0 0 40 -3,-1.4 -1,-0.3 1,-0.2 39,-0.0 -0.525 28.5-173.3 -73.3 130.5 37.2 16.1 15.9 31 32 A K S S- 0 0 160 -2,-0.3 -1,-0.2 35,-0.1 35,-0.1 0.869 72.0 -13.0 -88.8 -39.6 36.8 17.4 19.5 32 33 A R S S+ 0 0 32 1,-0.1 21,-1.2 34,-0.1 2,-0.3 0.676 106.5 83.5-139.4 -36.1 36.6 21.2 19.1 33 34 A I E - B 0 52A 2 19,-0.2 2,-0.4 20,-0.1 19,-0.2 -0.638 61.6-157.5 -80.8 137.2 37.6 22.7 15.8 34 35 A V E - B 0 51A 26 17,-2.9 17,-2.3 -2,-0.3 2,-0.5 -0.939 4.9-146.8-113.7 134.8 34.6 22.5 13.4 35 36 A V E -AB 25 50A 3 -10,-0.5 -10,-2.9 -2,-0.4 2,-0.5 -0.924 14.7-166.2-103.6 130.1 35.3 22.6 9.7 36 37 A Q E -AB 24 49A 28 13,-3.0 13,-2.2 -2,-0.5 2,-0.4 -0.958 11.1-142.8-116.5 131.4 32.6 24.4 7.7 37 38 A L E -AB 23 48A 7 -14,-3.2 -14,-1.9 -2,-0.5 2,-0.4 -0.821 18.2-161.4 -93.6 135.8 32.4 24.1 3.9 38 39 A N E -AB 22 47A 10 9,-3.2 9,-1.9 -2,-0.4 2,-0.6 -0.961 14.9-158.4-122.1 131.0 31.3 27.2 2.0 39 40 A A E -AB 21 46A 0 -18,-3.0 -18,-2.2 -2,-0.4 7,-0.2 -0.946 19.8-168.8-102.8 117.0 30.0 27.6 -1.5 40 41 A V E B 0 45A 45 5,-3.2 5,-2.6 -2,-0.6 -20,-0.1 -0.918 360.0 360.0-116.2 121.0 30.6 31.2 -2.6 41 42 A P 0 0 66 0, 0.0 -1,-0.2 0, 0.0 -26,-0.1 0.793 360.0 360.0-100.9 360.0 29.0 32.6 -5.8 42 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 43 46 A K 0 0 161 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 0.7 30.6 31.0 -10.8 44 47 A I + 0 0 32 -5,-0.0 45,-0.4 2,-0.0 2,-0.3 -0.990 360.0 179.4-113.9 124.2 30.6 28.9 -7.6 45 48 A R E -B 40 0A 117 -5,-2.6 -5,-3.2 -2,-0.5 2,-0.3 -0.930 16.0-137.7-120.2 148.4 33.9 28.5 -5.7 46 49 A Y E +Bc 39 90A 17 43,-2.9 45,-2.2 -2,-0.3 2,-0.3 -0.716 21.6 169.9-107.9 154.9 34.5 26.6 -2.4 47 50 A S E -B 38 0A 21 -9,-1.9 -9,-3.2 -2,-0.3 2,-0.5 -0.983 22.4-137.2-149.2 164.7 36.4 27.3 0.8 48 51 A X E -B 37 0A 53 -2,-0.3 2,-0.3 -11,-0.2 -11,-0.2 -0.979 17.6-172.6-126.6 131.3 36.7 25.8 4.1 49 52 A T E -B 36 0A 53 -13,-2.2 -13,-3.0 -2,-0.5 2,-0.4 -0.873 16.4-134.1-118.6 154.7 36.8 27.7 7.3 50 53 A I E +B 35 0A 64 -2,-0.3 10,-0.4 -15,-0.2 2,-0.3 -0.860 24.2 179.8-110.9 150.9 37.5 26.5 10.8 51 54 A H E -B 34 0A 29 -17,-2.3 -17,-2.9 -2,-0.4 2,-0.3 -0.971 28.0-119.3-146.4 148.9 35.4 27.4 13.9 52 55 A S E -B 33 0A 3 3,-0.6 -19,-0.2 6,-0.4 6,-0.1 -0.706 17.0-139.4 -89.6 144.7 35.4 26.7 17.6 53 56 A Q S S+ 0 0 116 -21,-1.2 3,-0.5 -2,-0.3 -1,-0.1 0.799 104.2 52.9 -71.5 -19.1 32.2 25.1 18.9 54 57 A N S S+ 0 0 93 1,-0.3 2,-0.2 -22,-0.2 -1,-0.2 0.826 123.8 21.6 -92.1 -28.2 32.5 27.4 21.9 55 58 A N S > S+ 0 0 76 3,-0.1 3,-0.7 1,-0.1 -3,-0.6 -0.623 79.2 170.0-128.1 72.4 32.8 30.8 20.1 56 59 A F T 3 S+ 0 0 55 -3,-0.5 -1,-0.1 1,-0.3 -4,-0.1 0.830 72.7 39.0 -64.5 -36.2 31.3 29.7 16.8 57 60 A R T 3 S+ 0 0 222 -3,-0.1 -1,-0.3 -6,-0.1 2,-0.1 0.689 105.2 76.3 -87.4 -17.6 30.9 33.1 15.2 58 61 A K S < S- 0 0 146 -3,-0.7 -6,-0.4 -6,-0.1 2,-0.2 -0.431 97.8 -81.6 -91.2 165.4 34.2 34.6 16.4 59 62 A Q - 0 0 193 -2,-0.1 2,-0.1 1,-0.1 -1,-0.1 -0.455 55.3-107.9 -65.3 135.0 37.7 33.9 15.0 60 63 A I - 0 0 27 -10,-0.4 2,-0.6 -2,-0.2 -1,-0.1 -0.390 22.9-153.4 -68.8 131.7 39.1 30.6 16.5 61 64 A G - 0 0 50 -2,-0.1 2,-0.2 0, 0.0 -1,-0.1 -0.933 17.3-150.0-100.1 114.1 42.0 30.8 19.0 62 65 A I - 0 0 104 -2,-0.6 -10,-0.0 2,-0.0 5,-0.0 -0.526 15.4-176.3 -85.1 149.1 44.0 27.6 18.8 63 66 A T > - 0 0 69 -2,-0.2 3,-2.0 1,-0.0 4,-0.1 -0.840 45.5 -91.0-129.7 175.4 45.8 26.2 21.9 64 67 A P G > S+ 0 0 121 0, 0.0 3,-1.8 0, 0.0 4,-0.2 0.801 119.8 68.1 -62.2 -30.6 48.1 23.2 22.2 65 68 A Q G 3 S+ 0 0 141 1,-0.3 3,-0.4 2,-0.1 4,-0.3 0.637 90.4 66.7 -61.5 -13.7 45.1 20.9 23.0 66 69 A D G <> + 0 0 2 -3,-2.0 4,-2.3 1,-0.2 -1,-0.3 0.455 69.6 100.5 -84.9 0.8 43.9 21.4 19.4 67 70 A A H <> S+ 0 0 49 -3,-1.8 4,-2.0 1,-0.2 -1,-0.2 0.913 82.2 47.4 -52.8 -47.8 47.0 19.5 17.9 68 71 A E H > S+ 0 0 120 -3,-0.4 4,-2.1 1,-0.2 -1,-0.2 0.918 110.4 51.9 -67.1 -40.0 45.0 16.3 17.3 69 72 A D H > S+ 0 0 2 -4,-0.3 4,-2.4 1,-0.2 -1,-0.2 0.918 108.8 51.7 -55.2 -45.4 42.1 18.1 15.7 70 73 A L H X S+ 0 0 72 -4,-2.3 4,-2.3 1,-0.2 -1,-0.2 0.889 109.3 49.9 -64.5 -37.0 44.5 19.8 13.3 71 74 A K H X S+ 0 0 117 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.868 109.9 50.2 -65.3 -40.1 46.0 16.5 12.4 72 75 A L H X S+ 0 0 47 -4,-2.1 4,-2.1 2,-0.2 -2,-0.2 0.846 110.4 50.0 -68.7 -33.3 42.6 15.0 11.7 73 76 A I H X S+ 0 0 18 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.948 110.6 49.8 -68.8 -42.5 41.7 18.0 9.5 74 77 A A H X S+ 0 0 44 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.919 112.0 49.0 -59.2 -47.2 45.0 17.5 7.6 75 78 A E H X S+ 0 0 114 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.893 109.8 50.3 -60.1 -39.1 44.3 13.8 7.2 76 79 A F H X S+ 0 0 25 -4,-2.1 4,-1.9 2,-0.2 -2,-0.2 0.938 110.1 50.7 -68.3 -40.4 40.8 14.5 5.9 77 80 A L H X S+ 0 0 73 -4,-2.6 4,-0.6 1,-0.2 -2,-0.2 0.914 113.4 45.1 -61.3 -46.3 42.2 17.1 3.4 78 81 A E H >< S+ 0 0 151 -4,-2.3 3,-0.6 1,-0.2 4,-0.4 0.877 109.8 55.5 -64.8 -40.0 44.8 14.5 2.1 79 82 A K H 3< S+ 0 0 154 -4,-2.6 4,-0.2 1,-0.2 -1,-0.2 0.884 120.6 29.5 -63.3 -35.2 42.2 11.7 1.9 80 83 A Y H 3X S+ 0 0 76 -4,-1.9 4,-2.7 -5,-0.2 5,-0.3 0.326 89.6 108.0-108.3 6.0 39.9 13.8 -0.3 81 84 A S H S+ 0 0 136 -4,-0.4 4,-1.3 1,-0.2 -1,-0.2 0.927 116.4 49.0 -61.2 -47.4 42.4 14.2 -5.6 83 86 A F H >> S+ 0 0 71 -4,-0.2 4,-1.5 2,-0.2 3,-0.7 0.945 112.8 46.7 -53.6 -53.9 38.6 14.1 -5.6 84 87 A L H 3X S+ 0 0 12 -4,-2.7 4,-2.4 1,-0.2 -1,-0.2 0.879 108.5 55.5 -60.9 -39.2 38.2 17.7 -4.5 85 88 A N H 3< S+ 0 0 90 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.797 115.8 37.5 -72.1 -18.5 40.7 18.9 -7.0 86 89 A E H << S+ 0 0 171 -4,-1.3 -1,-0.2 -3,-0.7 -2,-0.2 0.608 122.6 44.1 -90.4 -19.2 38.7 17.2 -9.9 87 90 A Y H < S+ 0 0 84 -4,-1.5 2,-0.3 -3,-0.2 -3,-0.2 0.842 115.4 20.1-104.2 -34.3 35.3 18.0 -8.5 88 91 A V < - 0 0 14 -4,-2.4 2,-0.4 -5,-0.2 -1,-0.1 -0.827 61.8-127.1-130.8 165.2 35.3 21.7 -7.3 89 92 A K - 0 0 129 -45,-0.4 -43,-2.9 -2,-0.3 2,-0.1 -0.955 31.0-138.3-107.6 136.6 37.2 25.0 -7.7 90 93 A F B -c 46 0A 62 -2,-0.4 -43,-0.2 -45,-0.2 -46,-0.0 -0.465 27.4 -83.8 -91.7 167.0 38.5 26.7 -4.6 91 94 A T 0 0 74 -45,-2.2 -1,-0.1 -2,-0.1 -45,-0.0 -0.380 360.0 360.0 -66.2 139.3 38.5 30.3 -3.5 92 95 A P 0 0 167 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.857 360.0 360.0 -32.1 360.0 41.5 32.4 -4.9