==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-AUG-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 10-FEB-10 2X5T . COMPND 2 MOLECULE: ORF 131; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS RUDIVIRUS 1; . AUTHOR M.OKE,L.G.CARTER,K.A.JOHNSON,H.LIU,S.A.MCMAHON,J.H.NAISMITH, . 93 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6780.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 64.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 16.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 32.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 85 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 117.2 30.7 -22.1 15.5 2 3 A S > - 0 0 63 1,-0.1 4,-2.0 4,-0.0 5,-0.2 -0.329 360.0-105.6 -67.7 162.4 32.9 -19.7 13.6 3 4 A L H > S+ 0 0 19 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.926 121.9 51.8 -55.2 -49.3 31.7 -16.2 12.9 4 5 A K H > S+ 0 0 91 1,-0.2 4,-3.0 2,-0.2 -1,-0.2 0.913 108.2 51.9 -54.2 -49.2 31.0 -17.0 9.2 5 6 A E H > S+ 0 0 92 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.866 111.9 45.7 -55.5 -41.4 29.0 -20.1 10.2 6 7 A I H X S+ 0 0 11 -4,-2.0 4,-2.7 2,-0.2 5,-0.2 0.915 112.0 51.6 -70.7 -43.3 26.9 -17.9 12.6 7 8 A I H X S+ 0 0 3 -4,-3.2 4,-2.4 2,-0.2 -2,-0.2 0.957 111.9 47.2 -52.5 -49.9 26.5 -15.3 9.9 8 9 A D H X S+ 0 0 58 -4,-3.0 4,-2.4 1,-0.2 -2,-0.2 0.911 112.8 47.8 -65.9 -45.4 25.3 -18.0 7.4 9 10 A E H X S+ 0 0 94 -4,-2.3 4,-2.4 1,-0.2 -1,-0.2 0.900 114.0 47.1 -59.9 -42.4 22.9 -19.6 9.9 10 11 A L H X S+ 0 0 3 -4,-2.7 4,-2.3 2,-0.2 -2,-0.2 0.841 112.3 49.5 -71.8 -33.3 21.4 -16.1 10.8 11 12 A G H X S+ 0 0 8 -4,-2.4 4,-2.2 -5,-0.2 -2,-0.2 0.942 113.1 47.1 -66.9 -48.5 21.0 -15.0 7.2 12 13 A K H X S+ 0 0 138 -4,-2.4 4,-2.1 -5,-0.2 -2,-0.2 0.930 115.1 45.4 -53.7 -53.0 19.3 -18.3 6.3 13 14 A Q H X S+ 0 0 72 -4,-2.4 4,-1.6 1,-0.2 6,-0.2 0.915 113.0 49.7 -62.0 -46.3 17.0 -18.2 9.2 14 15 A A H X>S+ 0 0 0 -4,-2.3 4,-1.5 1,-0.2 5,-0.7 0.855 112.1 49.0 -62.1 -36.8 16.1 -14.5 8.7 15 16 A K H <5S+ 0 0 167 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.895 111.9 47.7 -68.6 -42.4 15.4 -15.1 5.0 16 17 A E H <5S+ 0 0 134 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.766 123.3 33.0 -70.8 -25.7 13.1 -18.1 5.7 17 18 A Q H <5S- 0 0 97 -4,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.553 93.5-133.9-109.0 -13.3 11.1 -16.3 8.4 18 19 A N T <5S+ 0 0 122 -4,-1.5 2,-0.3 1,-0.2 -3,-0.2 0.839 75.0 92.8 54.5 36.2 11.1 -12.7 7.1 19 20 A K S - 0 0 30 -2,-1.6 3,-1.2 8,-0.1 8,-0.1 -0.613 31.2-111.6 -77.7 125.2 33.7 -13.4 22.2 28 29 A K T 3 S+ 0 0 203 -2,-0.4 3,-0.1 1,-0.2 -1,-0.1 -0.252 91.8 17.6 -64.1 138.9 36.6 -14.5 24.6 29 30 A G T 3 S+ 0 0 50 1,-0.3 2,-0.4 2,-0.1 -1,-0.2 0.204 79.9 134.4 92.0 -14.6 37.5 -12.3 27.6 30 31 A I < - 0 0 34 -3,-1.2 -1,-0.3 1,-0.2 5,-0.1 -0.583 32.2-173.2 -73.0 122.5 34.3 -10.2 27.8 31 32 A K S S- 0 0 169 -2,-0.4 -1,-0.2 -3,-0.1 37,-0.1 0.874 70.1 -5.8 -86.2 -45.9 33.2 -10.2 31.5 32 33 A R S S+ 0 0 74 35,-0.1 23,-0.2 36,-0.1 2,-0.1 0.708 102.2 88.7-125.1 -40.9 29.8 -8.5 31.5 33 34 A I - 0 0 7 21,-0.1 2,-0.5 35,-0.1 21,-0.2 -0.444 62.4-144.7 -73.0 138.1 28.6 -7.0 28.2 34 35 A V E - B 0 53A 27 19,-3.1 19,-1.9 -2,-0.1 2,-0.5 -0.929 10.9-154.9-104.6 125.3 26.7 -9.5 26.0 35 36 A V E -AB 25 52A 3 -2,-0.5 -10,-2.9 -10,-0.5 2,-0.4 -0.888 11.8-173.2-103.0 131.2 27.3 -9.1 22.3 36 37 A Q E -AB 24 51A 30 15,-2.6 15,-2.6 -2,-0.5 2,-0.4 -0.978 15.2-146.1-130.3 135.7 24.6 -10.3 19.9 37 38 A L E -AB 23 50A 7 -14,-3.2 -14,-2.3 -2,-0.4 2,-0.4 -0.875 20.1-166.1-100.4 134.5 24.7 -10.5 16.1 38 39 A N E -AB 22 49A 9 11,-2.7 11,-1.8 -2,-0.4 2,-0.5 -0.956 16.7-154.3-127.1 137.4 21.5 -9.8 14.3 39 40 A A E -AB 21 48A 0 -18,-2.9 -18,-2.1 -2,-0.4 9,-0.2 -0.970 19.3-167.6-108.4 120.5 20.4 -10.5 10.7 40 41 A V E - B 0 47A 35 7,-3.5 7,-2.6 -2,-0.5 2,-0.3 -0.944 8.5-146.3-116.0 115.2 17.6 -8.0 9.7 41 42 A P E + B 0 46A 28 0, 0.0 5,-0.2 0, 0.0 -21,-0.1 -0.590 28.2 156.3 -78.1 141.4 15.6 -8.5 6.5 42 43 A Q 0 0 84 3,-3.0 4,-0.1 -2,-0.3 0, 0.0 0.542 360.0 360.0-115.8 -75.9 14.3 -5.6 4.4 43 44 A D 0 0 142 2,-0.0 -1,-0.2 0, 0.0 0, 0.0 -0.013 360.0 360.0-102.8 360.0 13.6 -6.3 0.7 44 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 45 46 A K 0 0 128 0, 0.0 -3,-3.0 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 140.3 17.9 -8.1 1.5 46 47 A I E -B 41 0A 44 -5,-0.2 2,-0.4 -4,-0.1 45,-0.4 -0.956 360.0-173.4-117.6 130.5 19.6 -9.0 4.7 47 48 A R E -B 40 0A 52 -7,-2.6 -7,-3.5 -2,-0.4 2,-0.3 -0.969 12.7-143.1-124.2 142.1 21.6 -6.5 6.9 48 49 A Y E +Bc 39 92A 16 43,-2.4 45,-2.0 -2,-0.4 2,-0.3 -0.714 18.4 174.3-106.0 148.3 23.6 -7.3 9.9 49 50 A S E -B 38 0A 30 -11,-1.8 -11,-2.7 -2,-0.3 2,-0.5 -0.975 24.6-135.6-142.7 157.2 24.2 -5.4 13.2 50 51 A L E -B 37 0A 47 -2,-0.3 2,-0.3 -13,-0.2 -13,-0.2 -0.962 24.7-171.1-107.1 132.4 25.9 -6.0 16.5 51 52 A T E -B 36 0A 50 -15,-2.6 -15,-2.6 -2,-0.5 2,-0.3 -0.937 12.6-139.5-120.4 149.6 24.0 -5.0 19.6 52 53 A I E +B 35 0A 52 -2,-0.3 10,-0.5 -17,-0.2 2,-0.3 -0.834 23.0 179.0-112.0 150.1 25.2 -4.9 23.2 53 54 A H E -B 34 0A 24 -19,-1.9 -19,-3.1 -2,-0.3 2,-0.2 -0.984 24.9-121.3-149.2 149.4 23.2 -6.0 26.2 54 55 A S - 0 0 5 3,-0.4 -21,-0.1 -2,-0.3 6,-0.1 -0.489 17.5-135.3 -85.8 161.9 23.4 -6.4 30.0 55 56 A Q S > S+ 0 0 125 -2,-0.2 3,-0.6 -23,-0.2 -1,-0.1 0.810 105.0 50.6 -78.7 -37.3 22.9 -9.7 31.8 56 57 A N T 3 S+ 0 0 133 1,-0.3 -1,-0.1 2,-0.1 2,-0.1 0.783 127.1 20.2 -77.3 -33.3 20.7 -8.1 34.4 57 58 A N T > S+ 0 0 64 1,-0.1 3,-0.9 3,-0.1 -3,-0.4 -0.497 75.0 169.9-135.1 65.7 18.3 -6.4 32.0 58 59 A F T < S+ 0 0 79 -3,-0.6 -4,-0.1 1,-0.3 -1,-0.1 0.813 75.1 41.1 -56.0 -43.3 18.8 -8.3 28.8 59 60 A R T 3 S+ 0 0 240 -6,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.686 103.7 80.0 -82.1 -19.0 15.9 -6.9 26.7 60 61 A K S < S- 0 0 137 -3,-0.9 -6,-0.3 1,-0.1 2,-0.3 -0.204 98.5 -82.7 -76.6 172.2 16.4 -3.3 27.9 61 62 A Q - 0 0 191 -8,-0.1 2,-0.2 1,-0.1 -1,-0.1 -0.612 54.5-105.6 -73.7 139.3 19.0 -0.8 26.5 62 63 A I - 0 0 21 -10,-0.5 2,-0.7 -2,-0.3 -1,-0.1 -0.443 22.5-148.7 -70.5 136.6 22.4 -1.3 28.2 63 64 A G - 0 0 49 -2,-0.2 2,-0.1 -3,-0.0 -1,-0.1 -0.943 20.1-146.4-104.1 109.0 23.5 1.2 30.7 64 65 A I - 0 0 95 -2,-0.7 -10,-0.0 2,-0.0 5,-0.0 -0.455 17.6-174.7 -77.3 144.6 27.3 1.4 30.5 65 66 A T > - 0 0 62 -2,-0.1 3,-2.0 1,-0.0 4,-0.1 -0.838 43.4 -94.4-131.1 170.0 29.4 2.1 33.6 66 67 A P G > S+ 0 0 101 0, 0.0 3,-1.6 0, 0.0 -2,-0.0 0.808 119.2 67.6 -60.4 -27.6 33.2 2.6 34.0 67 68 A Q G 3 S+ 0 0 157 1,-0.3 3,-0.4 2,-0.1 4,-0.3 0.661 89.4 66.4 -64.7 -17.2 33.7 -1.0 34.8 68 69 A D G <> S+ 0 0 2 -3,-2.0 4,-2.4 1,-0.2 -1,-0.3 0.393 70.1 101.7 -81.9 1.4 32.7 -1.9 31.2 69 70 A A H <> S+ 0 0 45 -3,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.931 82.0 45.2 -55.3 -50.0 35.9 -0.2 29.8 70 71 A E H > S+ 0 0 93 -3,-0.4 4,-2.0 1,-0.2 -1,-0.2 0.900 111.7 51.9 -64.0 -43.5 37.8 -3.4 29.2 71 72 A D H > S+ 0 0 3 -4,-0.3 4,-2.1 1,-0.2 -1,-0.2 0.929 108.4 52.7 -53.8 -48.1 34.8 -5.2 27.6 72 73 A L H X S+ 0 0 67 -4,-2.4 4,-2.3 1,-0.2 -2,-0.2 0.880 108.3 49.7 -58.4 -42.7 34.4 -2.2 25.2 73 74 A K H X S+ 0 0 111 -4,-2.0 4,-2.2 1,-0.2 -1,-0.2 0.877 109.7 51.9 -61.3 -40.1 38.0 -2.4 24.1 74 75 A L H X S+ 0 0 37 -4,-2.0 4,-1.8 2,-0.2 -2,-0.2 0.825 108.8 49.9 -68.3 -34.0 37.7 -6.2 23.5 75 76 A I H X S+ 0 0 16 -4,-2.1 4,-2.5 2,-0.2 -2,-0.2 0.946 110.2 51.2 -65.8 -48.3 34.6 -5.5 21.3 76 77 A A H X S+ 0 0 46 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.897 110.9 48.9 -51.2 -44.0 36.6 -2.9 19.4 77 78 A E H X S+ 0 0 111 -4,-2.2 4,-1.8 2,-0.2 -1,-0.2 0.841 108.7 52.3 -68.7 -39.0 39.4 -5.5 18.9 78 79 A F H X S+ 0 0 21 -4,-1.8 4,-1.4 2,-0.2 -2,-0.2 0.927 108.9 51.1 -58.3 -48.1 37.0 -8.1 17.7 79 80 A L H X S+ 0 0 69 -4,-2.5 4,-0.9 1,-0.2 -2,-0.2 0.883 112.2 45.7 -59.8 -41.9 35.6 -5.7 15.2 80 81 A E H < S+ 0 0 153 -4,-1.9 4,-0.4 1,-0.2 -1,-0.2 0.832 109.1 55.3 -69.5 -35.3 39.1 -4.9 13.8 81 82 A K H < S+ 0 0 142 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.779 121.3 29.4 -67.6 -29.7 40.2 -8.5 13.7 82 83 A Y H X S+ 0 0 65 -4,-1.4 4,-3.1 -3,-0.1 5,-0.2 0.419 90.8 104.8-110.4 -2.2 37.2 -9.4 11.5 83 84 A S H X S+ 0 0 43 -4,-0.9 4,-2.2 1,-0.2 5,-0.1 0.804 80.9 45.7 -49.9 -46.3 36.7 -6.1 9.7 84 85 A D H > S+ 0 0 141 -4,-0.4 4,-1.1 2,-0.2 -1,-0.2 0.928 116.7 45.1 -68.8 -47.5 38.2 -7.1 6.3 85 86 A F H >> S+ 0 0 67 1,-0.2 4,-2.8 2,-0.2 3,-0.8 0.966 114.8 48.8 -55.9 -56.6 36.3 -10.4 6.2 86 87 A L H 3X S+ 0 0 13 -4,-3.1 4,-2.9 1,-0.2 -2,-0.2 0.876 106.9 53.6 -54.7 -45.0 33.0 -8.7 7.3 87 88 A N H 3< S+ 0 0 107 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.757 117.9 37.9 -72.3 -20.0 33.1 -5.9 4.9 88 89 A E H << S+ 0 0 173 -4,-1.1 -1,-0.2 -3,-0.8 -2,-0.2 0.808 121.5 44.2 -84.1 -38.5 33.5 -8.4 2.0 89 90 A Y H < S+ 0 0 88 -4,-2.8 2,-0.3 -5,-0.2 -2,-0.2 0.822 118.1 14.1 -86.8 -34.2 31.2 -11.0 3.3 90 91 A V < - 0 0 21 -4,-2.9 2,-0.4 -5,-0.2 -43,-0.1 -0.863 61.6-123.4-137.9 170.1 28.2 -9.1 4.6 91 92 A K - 0 0 137 -45,-0.4 -43,-2.4 -2,-0.3 2,-0.2 -0.952 26.6-144.1-115.2 140.2 26.3 -5.8 4.5 92 93 A F B -c 48 0A 66 -2,-0.4 -43,-0.2 -45,-0.3 -53,-0.0 -0.557 32.4 -84.7 -98.8 159.4 25.4 -3.8 7.7 93 94 A T 0 0 69 -45,-2.0 -1,-0.1 -2,-0.2 -45,-0.0 -0.473 360.0 360.0 -55.2 132.6 22.4 -1.7 8.6 94 95 A P 0 0 157 0, 0.0 -1,-0.1 0, 0.0 -47,-0.0 -0.137 360.0 360.0 -48.5 360.0 23.1 1.8 7.2