==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 17-MAY-05 1X62 . COMPND 2 MOLECULE: C-TERMINAL LIM DOMAIN PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6537.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 34.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 7.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 130 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 155.0 -23.8 9.6 14.0 2 2 A S - 0 0 117 2,-0.0 3,-0.0 3,-0.0 0, 0.0 0.872 360.0-175.7 -94.4 -49.6 -25.9 8.1 11.2 3 3 A S + 0 0 127 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.870 51.3 106.8 52.2 39.5 -27.3 5.0 12.8 4 4 A G + 0 0 52 1,-0.0 -1,-0.1 2,-0.0 -2,-0.0 0.378 13.2 133.9-111.0-116.4 -28.8 4.1 9.4 5 5 A S + 0 0 138 1,-0.2 2,-0.2 -3,-0.0 -1,-0.0 0.900 44.7 159.2 63.0 42.0 -27.8 1.4 6.9 6 6 A S + 0 0 125 2,-0.0 -1,-0.2 0, 0.0 -2,-0.0 -0.651 9.3 107.4 -97.1 153.9 -31.4 0.3 6.5 7 7 A G - 0 0 58 -2,-0.2 2,-0.3 2,-0.0 0, 0.0 0.059 55.0-125.6 139.7 108.1 -32.8 -1.7 3.6 8 8 A S + 0 0 122 -2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.582 41.0 158.2 -76.7 129.2 -33.9 -5.3 3.2 9 9 A I - 0 0 144 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.984 26.6-153.4-153.7 140.4 -32.2 -7.1 0.4 10 10 A G + 0 0 68 -2,-0.3 -1,-0.1 1,-0.2 0, 0.0 0.580 67.0 6.5 -82.5-125.8 -31.6 -10.8 -0.5 11 11 A N - 0 0 173 1,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.091 68.4-167.0 -55.2 157.3 -28.7 -12.0 -2.6 12 12 A A - 0 0 78 -3,-0.1 3,-0.1 3,-0.0 -1,-0.0 -0.992 29.9 -91.0-152.2 142.8 -26.0 -9.5 -3.7 13 13 A Q - 0 0 180 -2,-0.3 2,-0.0 1,-0.1 0, 0.0 -0.239 55.1 -99.8 -53.6 133.8 -23.2 -9.4 -6.2 14 14 A K - 0 0 207 1,-0.0 -1,-0.1 2,-0.0 0, 0.0 -0.311 43.4-163.7 -58.5 133.9 -19.9 -10.6 -4.7 15 15 A L - 0 0 91 -3,-0.1 2,-1.4 11,-0.0 11,-0.1 -0.967 27.2-110.9-126.7 140.3 -17.7 -7.7 -3.6 16 16 A P - 0 0 30 0, 0.0 9,-0.2 0, 0.0 7,-0.1 -0.506 37.6-143.6 -69.8 91.7 -13.9 -7.6 -2.8 17 17 A M - 0 0 116 -2,-1.4 19,-0.3 7,-0.2 7,-0.3 -0.342 24.1-106.7 -59.4 130.5 -14.0 -6.9 0.9 18 18 A C - 0 0 1 5,-2.5 19,-0.2 1,-0.1 -1,-0.1 -0.072 18.8-148.0 -54.5 158.7 -11.2 -4.6 2.0 19 19 A D S S+ 0 0 46 17,-0.5 18,-0.1 3,-0.1 -1,-0.1 0.814 90.5 56.7 -98.2 -41.9 -8.3 -6.1 3.9 20 20 A K S S+ 0 0 104 1,-0.1 17,-0.1 3,-0.1 -2,-0.0 0.966 132.5 6.7 -54.3 -59.3 -7.2 -3.2 6.1 21 21 A C S S- 0 0 76 2,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.914 98.1-125.3 -90.2 -56.9 -10.7 -2.7 7.6 22 22 A G + 0 0 40 1,-0.3 2,-0.3 0, 0.0 -3,-0.1 0.811 56.4 130.2 108.1 56.5 -12.6 -5.7 6.3 23 23 A T - 0 0 75 -7,-0.1 -5,-2.5 0, 0.0 -1,-0.3 -0.999 66.2 -88.0-141.3 142.2 -15.8 -4.5 4.6 24 24 A G - 0 0 48 -2,-0.3 -7,-0.2 -7,-0.3 2,-0.1 -0.228 48.2-136.4 -49.5 119.7 -17.4 -5.2 1.3 25 25 A I - 0 0 0 -9,-0.2 2,-0.3 2,-0.0 4,-0.1 -0.455 20.5-169.0 -80.2 153.6 -16.0 -2.8 -1.2 26 26 A V - 0 0 115 2,-0.3 2,-0.3 -2,-0.1 -11,-0.0 -0.977 49.0 -15.4-147.7 130.6 -18.1 -0.9 -3.7 27 27 A G S S+ 0 0 56 -2,-0.3 2,-0.1 2,-0.0 -2,-0.0 -0.628 114.8 23.2 84.3-137.6 -17.2 1.2 -6.8 28 28 A V S S+ 0 0 113 -2,-0.3 2,-0.3 2,-0.0 -2,-0.3 -0.404 76.8 143.9 -67.4 139.0 -13.7 2.4 -7.2 29 29 A F - 0 0 79 9,-0.2 2,-0.7 10,-0.1 9,-0.2 -0.975 51.6 -99.9-165.0 170.7 -11.0 0.4 -5.3 30 30 A V E -A 37 0A 40 7,-1.8 7,-1.6 -2,-0.3 2,-0.4 -0.868 32.4-153.5-108.2 102.6 -7.4 -0.9 -5.5 31 31 A K E -A 36 0A 121 -2,-0.7 5,-0.2 5,-0.2 2,-0.1 -0.614 13.3-152.7 -77.3 123.8 -7.3 -4.5 -6.5 32 32 A L - 0 0 6 3,-2.2 -1,-0.0 -2,-0.4 5,-0.0 -0.472 35.1 -86.3 -92.6 166.3 -4.2 -6.3 -5.2 33 33 A R S S- 0 0 205 1,-0.2 -1,-0.0 -2,-0.1 -2,-0.0 0.869 117.8 -15.7 -32.0 -72.0 -2.3 -9.2 -6.7 34 34 A D S S+ 0 0 120 2,-0.0 -1,-0.2 -3,-0.0 2,-0.2 0.371 135.3 63.8-118.0 -2.0 -4.5 -11.8 -4.9 35 35 A R - 0 0 118 -19,-0.0 -3,-2.2 2,-0.0 2,-0.3 -0.640 68.6-137.1-117.1 175.5 -6.1 -9.5 -2.4 36 36 A H E +A 31 0A 47 -19,-0.3 -17,-0.5 -5,-0.2 2,-0.3 -0.984 19.8 172.6-137.1 147.4 -8.4 -6.4 -2.5 37 37 A R E -A 30 0A 3 -7,-1.6 -7,-1.8 -2,-0.3 -19,-0.1 -0.938 34.3 -90.3-147.1 167.4 -8.4 -3.1 -0.7 38 38 A H > - 0 0 31 -2,-0.3 4,-1.9 -9,-0.2 -9,-0.2 -0.340 36.3-113.1 -78.5 161.9 -10.2 0.3 -0.7 39 39 A P T 4 S+ 0 0 55 0, 0.0 -10,-0.1 0, 0.0 -1,-0.1 0.596 120.4 36.7 -69.8 -10.6 -9.1 3.3 -2.7 40 40 A E T >4 S+ 0 0 142 2,-0.1 3,-0.7 3,-0.1 -11,-0.0 0.634 113.2 54.7-112.2 -26.3 -8.2 5.1 0.6 41 41 A C T 34 S+ 0 0 4 1,-0.2 7,-0.0 9,-0.0 0, 0.0 0.782 82.3 86.6 -78.7 -28.6 -7.0 2.1 2.6 42 42 A Y T 3< S+ 0 0 29 -4,-1.9 -1,-0.2 6,-0.0 7,-0.1 0.728 70.5 109.0 -43.5 -22.4 -4.4 1.3 -0.0 43 43 A V S < S- 0 0 18 -3,-0.7 7,-0.2 5,-0.1 20,-0.1 -0.067 88.3 -73.1 -54.6 159.1 -2.3 3.8 1.9 44 44 A C - 0 0 1 5,-1.7 20,-0.2 1,-0.1 -1,-0.1 -0.078 33.9-139.9 -52.5 154.8 0.7 2.5 4.0 45 45 A T S S+ 0 0 50 18,-1.1 19,-0.1 3,-0.1 -1,-0.1 0.805 97.2 49.2 -88.0 -34.0 -0.2 0.7 7.2 46 46 A D S S- 0 0 81 17,-0.2 18,-0.1 3,-0.1 -1,-0.0 0.995 138.1 -4.5 -68.2 -65.9 2.6 2.3 9.3 47 47 A C S S- 0 0 79 2,-0.1 -4,-0.1 18,-0.0 -2,-0.1 0.903 93.5-117.3 -93.8 -63.3 2.1 5.9 8.5 48 48 A G + 0 0 38 1,-0.1 2,-0.3 -6,-0.1 -5,-0.1 0.689 46.3 162.7 122.3 51.6 -0.7 6.1 5.9 49 49 A T - 0 0 42 -7,-0.1 -5,-1.7 1,-0.1 2,-0.7 -0.753 50.5 -96.2-100.8 146.3 0.6 7.6 2.6 50 50 A N > - 0 0 107 -2,-0.3 4,-0.6 -7,-0.2 3,-0.5 -0.432 35.3-173.8 -61.9 104.7 -1.1 7.2 -0.8 51 51 A L H > + 0 0 1 -2,-0.7 4,-0.9 1,-0.2 -1,-0.2 0.259 54.0 111.2 -84.4 12.9 0.7 4.3 -2.3 52 52 A K H 4 S+ 0 0 164 2,-0.1 -1,-0.2 1,-0.1 4,-0.1 0.946 98.5 7.1 -50.2 -57.0 -1.2 5.0 -5.6 53 53 A Q H 4 S+ 0 0 173 -3,-0.5 -2,-0.1 2,-0.1 -1,-0.1 0.870 131.7 55.3 -93.7 -48.4 1.9 6.1 -7.4 54 54 A K H < S- 0 0 151 -4,-0.6 -3,-0.2 1,-0.1 -2,-0.1 0.930 102.8-139.5 -50.7 -51.9 4.7 5.3 -4.9 55 55 A G < - 0 0 18 -4,-0.9 11,-0.4 -5,-0.1 2,-0.3 -0.316 5.1 -93.1 110.0 165.4 3.5 1.7 -4.7 56 56 A H - 0 0 44 9,-0.1 2,-0.3 -2,-0.1 9,-0.2 -0.876 27.5-148.3-120.1 152.7 3.1 -1.0 -2.0 57 57 A F E -B 64 0B 81 7,-1.5 2,-0.6 -2,-0.3 7,-0.6 -0.741 16.8-120.1-115.9 164.9 5.4 -3.7 -0.7 58 58 A F E +B 63 0B 120 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.907 41.9 153.2-110.5 110.4 4.8 -7.2 0.7 59 59 A V S S- 0 0 17 3,-1.7 3,-0.4 -2,-0.6 -2,-0.1 -0.932 73.5 -19.2-141.3 114.6 6.1 -7.7 4.3 60 60 A E S S- 0 0 117 -2,-0.4 3,-0.1 1,-0.2 -1,-0.1 0.893 125.5 -54.7 58.3 41.6 4.6 -10.3 6.7 61 61 A D S S+ 0 0 133 1,-0.2 -1,-0.2 0, 0.0 2,-0.2 0.827 121.5 105.4 62.1 32.0 1.4 -10.5 4.6 62 62 A Q - 0 0 57 -3,-0.4 -3,-1.7 2,-0.0 2,-0.4 -0.782 66.3-120.3-133.0 176.6 1.1 -6.7 5.0 63 63 A I E +B 58 0B 2 -2,-0.2 -18,-1.1 -5,-0.2 2,-0.3 -0.978 33.7 157.3-126.6 135.9 1.6 -3.6 2.9 64 64 A Y E -B 57 0B 14 -7,-0.6 -7,-1.5 -2,-0.4 2,-0.3 -0.925 42.8 -87.2-147.4 170.4 3.9 -0.6 3.5 65 65 A C >> - 0 0 7 -2,-0.3 4,-2.7 -9,-0.2 3,-1.7 -0.642 41.8-111.2 -85.5 138.5 5.6 2.3 1.7 66 66 A E H 3> S+ 0 0 126 -11,-0.4 4,-1.7 -2,-0.3 5,-0.2 0.787 121.6 59.1 -33.4 -36.9 9.0 1.7 0.2 67 67 A K H 3> S+ 0 0 151 2,-0.2 4,-0.7 3,-0.1 -1,-0.3 0.943 120.0 23.8 -61.7 -49.8 10.2 4.0 3.0 68 68 A H H <> S+ 0 0 41 -3,-1.7 4,-2.0 2,-0.2 3,-0.5 0.923 120.0 58.3 -82.0 -49.7 8.9 1.7 5.7 69 69 A A H >X S+ 0 0 0 -4,-2.7 4,-3.1 1,-0.3 3,-0.7 0.923 104.3 52.0 -44.6 -57.4 8.9 -1.6 3.8 70 70 A R H 3X S+ 0 0 145 -4,-1.7 4,-1.7 -5,-0.3 -1,-0.3 0.877 108.7 52.1 -48.8 -42.6 12.6 -1.4 3.1 71 71 A E H 3< S+ 0 0 125 -4,-0.7 -1,-0.3 -3,-0.5 -2,-0.2 0.866 115.4 41.5 -63.4 -37.2 13.1 -0.8 6.8 72 72 A R H << S+ 0 0 98 -4,-2.0 -2,-0.2 -3,-0.7 -3,-0.2 0.971 115.8 45.5 -74.5 -58.0 11.1 -3.9 7.6 73 73 A V H < S+ 0 0 102 -4,-3.1 2,-0.5 1,-0.2 -2,-0.2 0.779 119.3 50.1 -56.6 -26.8 12.4 -6.2 4.9 74 74 A S S < S+ 0 0 80 -4,-1.7 -1,-0.2 -5,-0.5 3,-0.0 -0.942 106.5 21.3-120.4 112.0 15.9 -5.0 5.9 75 75 A G S S+ 0 0 63 -2,-0.5 -3,-0.1 -3,-0.0 -4,-0.0 -0.996 98.1 0.4 142.2-146.7 16.9 -5.1 9.5 76 76 A P - 0 0 128 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.004 60.0-125.5 -69.7-179.3 15.8 -6.9 12.7 77 77 A S - 0 0 114 -3,-0.0 2,-0.7 2,-0.0 -4,-0.0 -0.918 11.1-151.6-138.7 110.1 13.0 -9.5 13.0 78 78 A S 0 0 89 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.705 360.0 360.0 -83.9 115.1 10.1 -9.1 15.5 79 79 A G 0 0 130 -2,-0.7 -1,-0.1 0, 0.0 -2,-0.0 -0.165 360.0 360.0 -47.5 360.0 8.8 -12.6 16.5