==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 17-MAY-05 1X6A . COMPND 2 MOLECULE: LIM DOMAIN KINASE 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR N.NAMEKI,A.SASAGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6522.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 37.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 12.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 146.8 -6.3 -4.0 -26.3 2 2 A S + 0 0 128 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.954 360.0 145.4-137.2 153.2 -6.7 -7.2 -24.2 3 3 A S + 0 0 128 -2,-0.3 2,-0.0 1,-0.0 0, 0.0 -0.913 5.0 145.2-169.3 167.7 -6.5 -8.3 -20.6 4 4 A G + 0 0 70 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 0.041 17.6 161.9 144.8 96.2 -8.3 -10.8 -18.3 5 5 A S + 0 0 112 -2,-0.0 2,-0.2 2,-0.0 -2,-0.0 -0.983 6.5 166.5-135.4 144.0 -6.3 -12.7 -15.6 6 6 A S + 0 0 132 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.664 21.5 131.7-141.1-168.6 -7.6 -14.5 -12.5 7 7 A G + 0 0 62 -2,-0.2 2,-0.2 1,-0.2 16,-0.0 0.581 26.9 149.5 111.9 91.7 -6.7 -17.0 -9.7 8 8 A K - 0 0 130 14,-0.0 -1,-0.2 15,-0.0 14,-0.1 -0.767 40.1-131.1-153.9 105.7 -7.6 -15.8 -6.2 9 9 A D - 0 0 85 -2,-0.2 0, 0.0 13,-0.2 0, 0.0 -0.330 15.2-170.3 -64.7 136.2 -8.5 -18.3 -3.5 10 10 A Y S S+ 0 0 197 -2,-0.1 -1,-0.2 3,-0.0 2,-0.0 0.846 77.4 50.3 -87.2 -49.5 -11.7 -17.7 -1.5 11 11 A W S S+ 0 0 174 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.041 82.1 67.3 -76.9-175.2 -10.9 -20.4 1.1 12 12 A G + 0 0 23 1,-0.2 2,-0.3 2,-0.0 -3,-0.1 0.988 52.1 158.1 59.5 79.8 -7.6 -20.8 2.9 13 13 A K + 0 0 109 1,-0.1 -1,-0.2 3,-0.0 3,-0.1 -0.757 38.8 92.1-138.2 85.8 -7.4 -17.7 5.2 14 14 A F S S+ 0 0 169 -2,-0.3 -1,-0.1 0, 0.0 -2,-0.0 0.385 81.4 48.3-138.3 -50.1 -5.0 -18.4 8.1 15 15 A G S S- 0 0 34 1,-0.1 2,-0.4 -3,-0.0 11,-0.1 0.202 96.1 -86.0 -80.7-159.1 -1.6 -17.1 6.8 16 16 A E - 0 0 65 9,-0.4 9,-2.3 -3,-0.1 2,-0.3 -0.963 37.1-171.5-123.5 139.3 -1.0 -13.7 5.2 17 17 A F B -A 24 0A 39 -2,-0.4 2,-0.5 7,-0.3 7,-0.2 -0.945 37.4 -99.4-128.1 144.1 -1.4 -12.9 1.5 18 18 A C >> - 0 0 0 5,-2.0 4,-3.0 -2,-0.3 3,-1.5 -0.594 32.4-137.4 -65.2 121.1 -0.4 -9.7 -0.4 19 19 A H T 34 S+ 0 0 131 17,-2.9 -1,-0.2 -2,-0.5 18,-0.1 0.868 101.5 55.1 -45.5 -47.2 -3.7 -7.7 -0.6 20 20 A G T 34 S+ 0 0 62 16,-0.2 -1,-0.3 1,-0.2 17,-0.1 0.764 125.1 18.4 -62.2 -30.8 -2.9 -6.9 -4.2 21 21 A C T <4 S- 0 0 44 -3,-1.5 -2,-0.2 2,-0.2 -1,-0.2 0.556 85.4-137.4-118.5 -9.6 -2.4 -10.5 -5.5 22 22 A S < + 0 0 16 -4,-3.0 2,-0.2 1,-0.2 -13,-0.2 0.440 59.7 136.3 63.9 2.8 -4.1 -12.7 -2.8 23 23 A L - 0 0 104 -5,-0.3 -5,-2.0 1,-0.1 -1,-0.2 -0.605 62.2-105.0 -82.7 142.1 -1.0 -15.0 -3.0 24 24 A L B -A 17 0A 90 -7,-0.2 -7,-0.3 -2,-0.2 2,-0.2 -0.330 35.6-154.8 -64.0 140.3 0.5 -16.4 0.2 25 25 A M + 0 0 14 -9,-2.3 -9,-0.4 1,-0.1 4,-0.1 -0.693 22.7 172.7-115.7 168.1 3.8 -14.8 1.4 26 26 A T + 0 0 145 -2,-0.2 -1,-0.1 2,-0.2 3,-0.1 0.494 61.9 57.1-143.9 -37.4 6.5 -16.2 3.7 27 27 A G S S- 0 0 45 1,-0.3 -2,-0.1 0, 0.0 0, 0.0 0.276 104.2 -31.9 -82.9-153.2 9.5 -13.8 3.7 28 28 A P + 0 0 106 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 -0.236 61.8 179.5 -67.2 159.6 9.6 -10.1 4.7 29 29 A F - 0 0 88 9,-0.2 2,-0.3 10,-0.1 9,-0.2 -0.915 23.3-118.4-149.8 172.9 6.5 -7.9 4.1 30 30 A M B -B 37 0B 28 7,-1.5 7,-1.4 -2,-0.3 2,-0.4 -0.922 18.6-154.5-122.5 146.5 5.4 -4.2 4.6 31 31 A V + 0 0 88 -2,-0.3 2,-0.3 5,-0.2 5,-0.1 -0.991 32.2 127.4-129.5 128.7 2.5 -3.0 6.8 32 32 A A > + 0 0 8 3,-0.4 3,-2.1 -2,-0.4 -2,-0.1 -0.941 62.3 28.8-167.9 157.9 0.6 0.3 6.4 33 33 A G T 3 S- 0 0 20 1,-0.3 3,-0.1 -2,-0.3 27,-0.0 0.751 121.6 -74.6 52.3 31.9 -3.0 1.4 6.0 34 34 A E T 3 S+ 0 0 184 1,-0.2 -1,-0.3 0, 0.0 2,-0.2 0.630 112.4 102.9 55.3 22.5 -4.1 -1.6 8.2 35 35 A F < - 0 0 76 -3,-2.1 -3,-0.4 2,-0.0 2,-0.3 -0.439 66.1-127.2-115.9-173.9 -3.5 -3.9 5.1 36 36 A K + 0 0 85 -2,-0.2 -17,-2.9 -19,-0.2 2,-0.3 -0.992 26.7 175.6-140.8 139.9 -0.6 -6.4 4.2 37 37 A Y B -B 30 0B 29 -7,-1.4 -7,-1.5 -2,-0.3 5,-0.1 -0.981 37.0 -98.9-146.2 155.5 1.4 -6.5 1.0 38 38 A H > - 0 0 38 -2,-0.3 3,-2.3 -9,-0.2 4,-0.2 -0.443 45.1-111.0 -65.4 154.8 4.4 -8.3 -0.6 39 39 A P T 3 S+ 0 0 53 0, 0.0 -1,-0.1 0, 0.0 -10,-0.1 0.531 121.2 51.2 -66.0 -5.3 7.6 -6.1 -0.4 40 40 A E T 3 S+ 0 0 144 1,-0.1 -2,-0.1 10,-0.1 12,-0.0 0.272 104.3 56.2-108.7 -2.3 7.3 -5.7 -4.2 41 41 A C S < S+ 0 0 66 -3,-2.3 2,-0.9 10,-0.1 -21,-0.1 0.187 72.1 97.5-123.1 15.8 3.6 -4.5 -4.2 42 42 A F + 0 0 4 9,-0.3 9,-2.6 -4,-0.2 2,-0.3 -0.903 60.8 140.0-103.7 92.9 3.5 -1.5 -2.0 43 43 A A B -C 50 0C 21 -2,-0.9 2,-0.3 7,-0.2 7,-0.2 -0.938 63.7 -82.3-137.7 161.7 3.8 1.2 -4.7 44 44 A C > - 0 0 0 5,-1.6 4,-2.8 -2,-0.3 22,-0.2 -0.534 42.3-138.6 -63.8 124.3 2.4 4.6 -5.8 45 45 A M T 4 S+ 0 0 103 20,-2.5 -1,-0.1 -2,-0.3 21,-0.1 0.925 96.7 37.6 -49.3 -59.8 -1.0 3.8 -7.4 46 46 A S T 4 S+ 0 0 86 19,-0.2 -1,-0.2 1,-0.2 20,-0.1 0.911 128.9 28.9 -62.9 -50.0 -0.6 6.2 -10.3 47 47 A C T 4 S- 0 0 69 2,-0.1 -1,-0.2 1,-0.0 -2,-0.2 0.567 89.1-137.2 -93.9 -13.4 3.2 5.9 -11.1 48 48 A K < + 0 0 151 -4,-2.8 -3,-0.1 1,-0.2 2,-0.1 0.489 44.5 155.5 69.5 8.2 3.9 2.3 -10.0 49 49 A V - 0 0 67 -5,-0.2 -5,-1.6 1,-0.1 2,-0.3 -0.446 46.9-117.5 -64.9 136.7 7.3 3.2 -8.2 50 50 A I B -C 43 0C 72 -7,-0.2 2,-0.4 -2,-0.1 -7,-0.2 -0.625 23.4-142.6 -79.9 131.7 8.1 0.6 -5.5 51 51 A I - 0 0 2 -9,-2.6 -9,-0.3 -2,-0.3 2,-0.2 -0.807 16.9-156.6 -95.3 140.5 8.2 2.0 -2.0 52 52 A E > - 0 0 132 -2,-0.4 2,-2.1 -12,-0.0 3,-1.2 -0.600 39.8 -71.0-112.0 169.6 10.9 0.5 0.3 53 53 A D T 3 S+ 0 0 159 1,-0.3 3,-0.1 -2,-0.2 -23,-0.0 -0.399 128.1 18.9 -67.3 77.3 11.2 0.3 4.2 54 54 A G T 3 S+ 0 0 77 -2,-2.1 -1,-0.3 1,-0.4 2,-0.2 0.050 89.1 120.5 148.7 -27.8 11.8 4.0 4.8 55 55 A D S < S- 0 0 89 -3,-1.2 2,-0.4 1,-0.1 -1,-0.4 -0.471 75.5-101.6 -70.1 130.7 10.6 5.8 1.7 56 56 A A - 0 0 59 -2,-0.2 12,-2.7 -3,-0.1 13,-0.3 -0.358 44.8-175.8 -55.7 103.4 7.8 8.3 2.4 57 57 A Y E -D 67 0D 107 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.508 9.9-149.3 -94.4 170.0 4.4 6.8 1.5 58 58 A A E -D 66 0D 15 8,-2.2 8,-2.5 -2,-0.2 2,-0.3 -0.992 5.1-149.4-143.7 141.5 1.0 8.7 1.7 59 59 A L E -D 65 0D 69 -2,-0.3 2,-0.3 6,-0.2 6,-0.2 -0.796 4.9-145.8-114.7 156.1 -2.5 7.4 2.5 60 60 A V - 0 0 27 4,-1.1 4,-0.3 2,-0.5 11,-0.0 -0.777 31.4-110.6-117.3 158.5 -6.0 8.5 1.4 61 61 A Q S S+ 0 0 160 -2,-0.3 2,-0.2 2,-0.1 -1,-0.0 0.568 107.4 50.1 -63.3 -14.3 -9.4 8.5 3.2 62 62 A H S S- 0 0 144 2,-0.1 2,-1.8 0, 0.0 -2,-0.5 -0.670 117.8 -69.9-116.2 174.3 -10.4 5.8 0.6 63 63 A A S S+ 0 0 83 -2,-0.2 2,-0.3 -4,-0.1 -2,-0.1 -0.494 94.3 107.8 -70.2 84.4 -8.6 2.5 -0.5 64 64 A T - 0 0 38 -2,-1.8 -4,-1.1 -4,-0.3 2,-0.3 -0.973 49.4-156.5-157.9 154.3 -5.7 4.3 -2.4 65 65 A L E +D 59 0D 8 -2,-0.3 -20,-2.5 -6,-0.2 -19,-0.2 -0.998 13.8 175.7-141.7 135.2 -1.9 4.8 -1.8 66 66 A Y E -D 58 0D 57 -8,-2.5 -8,-2.2 -2,-0.3 2,-0.3 -0.730 33.2 -99.4-131.5 173.9 0.4 7.5 -3.1 67 67 A C E >> -D 57 0D 17 -10,-0.2 4,-3.2 -2,-0.2 3,-0.5 -0.779 32.0-118.9 -93.5 150.6 4.1 8.6 -2.8 68 68 A G H 3> S+ 0 0 34 -12,-2.7 4,-0.7 -2,-0.3 -11,-0.1 0.873 113.4 54.8 -58.1 -38.1 4.9 11.6 -0.5 69 69 A K H 34 S+ 0 0 191 -13,-0.3 -1,-0.2 1,-0.2 -12,-0.1 0.872 120.6 29.1 -61.2 -42.5 6.4 13.6 -3.5 70 70 A C H X4 S+ 0 0 52 -3,-0.5 3,-1.9 2,-0.1 4,-0.4 0.720 106.5 67.6 -93.5 -30.0 3.1 13.2 -5.5 71 71 A H H >X S+ 0 0 21 -4,-3.2 3,-1.2 1,-0.3 4,-1.0 0.713 82.3 87.0 -64.4 -14.1 0.4 13.0 -2.8 72 72 A N H 3X S+ 0 0 91 -4,-0.7 4,-2.4 -5,-0.3 -1,-0.3 0.782 82.4 55.2 -50.3 -34.4 1.6 16.7 -2.4 73 73 A E H <4 S+ 0 0 131 -3,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.787 102.5 54.5 -73.4 -32.7 -1.0 17.6 -5.1 74 74 A V H <4 S+ 0 0 76 -3,-1.2 -1,-0.2 -4,-0.4 -2,-0.2 0.678 119.2 34.1 -75.5 -19.4 -3.9 16.0 -3.1 75 75 A V H < S- 0 0 91 -4,-1.0 -2,-0.2 -3,-0.3 -3,-0.1 0.782 77.3-169.1-104.9 -38.0 -3.1 18.1 -0.1 76 76 A S >< + 0 0 56 -4,-2.4 3,-2.7 -5,-0.2 -3,-0.1 0.507 25.0 159.1 55.2 13.7 -1.8 21.4 -1.6 77 77 A G T 3 S+ 0 0 64 1,-0.3 -1,-0.1 -5,-0.2 -4,-0.0 0.749 71.2 30.0 -26.8 -73.2 -0.5 22.5 1.9 78 78 A P T 3 S+ 0 0 126 0, 0.0 -1,-0.3 0, 0.0 2,-0.2 0.135 110.4 88.9 -82.3 14.8 2.1 25.2 0.9 79 79 A S S < S- 0 0 80 -3,-2.7 0, 0.0 1,-0.2 0, 0.0 -0.491 77.1-123.0-104.6 176.8 0.2 26.2 -2.3 80 80 A S 0 0 124 -2,-0.2 -1,-0.2 1,-0.2 0, 0.0 0.925 360.0 360.0 -84.0 -78.6 -2.6 28.7 -3.0 81 81 A G 0 0 113 0, 0.0 -1,-0.2 0, 0.0 -5,-0.0 -0.815 360.0 360.0 100.1 360.0 -5.6 26.9 -4.5