==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-SEP-04 1XHS . COMPND 2 MOLECULE: HYPOTHETICAL UPF0131 PROTEIN YTFP; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR J.M.ARAMINI,Y.J.HUANG,G.V.T.SWAPNA,R.K.PARANJI,R.XIAO, . 113 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7132.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 75 66.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 30.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 15.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 87 0, 0.0 57,-1.9 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 171.3 5.1 3.4 -10.6 2 2 A R E +A 57 0A 100 85,-0.5 87,-1.9 55,-0.2 2,-0.3 -0.708 360.0 176.3 -88.0 138.1 5.1 0.7 -8.0 3 3 A I E -Ab 56 89A 11 53,-1.8 53,-1.9 -2,-0.4 2,-0.5 -0.973 30.6-114.3-142.2 151.2 2.4 0.8 -5.3 4 4 A F E -A 55 0A 2 85,-1.8 2,-0.9 -2,-0.3 87,-0.2 -0.764 24.0-141.4 -91.2 127.5 1.2 -1.3 -2.4 5 5 A V E +A 54 0A 26 49,-2.9 49,-1.6 -2,-0.5 3,-0.1 -0.788 33.9 158.4 -92.4 106.4 -2.3 -2.8 -2.7 6 6 A Y + 0 0 14 -2,-0.9 2,-0.4 47,-0.2 -1,-0.1 0.082 54.0 90.5-110.7 20.1 -4.0 -2.7 0.6 7 7 A G S S- 0 0 36 1,-0.4 4,-0.4 47,-0.1 -1,-0.1 -0.549 107.9 -67.4-115.3 66.3 -7.5 -3.0 -0.9 8 8 A S > - 0 0 30 -2,-0.4 3,-1.4 2,-0.2 -1,-0.4 0.449 49.7 -96.8 61.7 152.0 -7.9 -6.8 -0.9 9 9 A L T 3 S+ 0 0 44 1,-0.3 -1,-0.1 -3,-0.1 3,-0.1 0.747 125.7 68.4 -68.2 -20.8 -5.9 -9.1 -3.2 10 10 A R T 3 S+ 0 0 212 1,-0.1 -1,-0.3 2,-0.0 -2,-0.2 0.699 86.3 178.5 -68.4 -19.5 -8.8 -8.9 -5.5 11 11 A H < - 0 0 50 -3,-1.4 2,-0.3 -4,-0.4 -1,-0.1 0.060 29.6 -86.4 44.5-157.9 -7.8 -5.2 -6.0 12 12 A K - 0 0 142 6,-0.1 3,-0.1 1,-0.1 -1,-0.1 -0.989 11.1-145.0-147.7 139.2 -9.8 -3.1 -8.4 13 13 A Q > > - 0 0 82 -2,-0.3 2,-1.2 1,-0.2 5,-1.0 0.663 33.5-169.5 -75.9 -16.4 -9.6 -2.6 -12.2 14 14 A G T 3 5 - 0 0 58 1,-0.2 -1,-0.2 4,-0.2 -3,-0.0 -0.485 65.0 -31.1 67.8 -97.4 -10.7 1.0 -11.7 15 15 A N T 3 5S- 0 0 102 -2,-1.2 -1,-0.2 -3,-0.1 -2,-0.1 0.627 110.1 -63.3-122.3 -37.5 -11.4 2.2 -15.2 16 16 A S T X>5S+ 0 0 52 -3,-0.8 3,-2.2 0, 0.0 4,-0.9 0.012 118.0 78.2-178.6 -51.2 -9.0 0.2 -17.3 17 17 A H H >>>S+ 0 0 62 1,-0.3 4,-1.3 2,-0.2 3,-0.9 0.809 87.4 64.1 -47.0 -39.8 -5.3 1.0 -16.4 18 18 A W H 34 - 0 0 57 -2,-0.3 4,-1.1 -42,-0.2 -1,-0.1 -0.176 38.1-124.9 -52.9 147.1 2.6 2.6 -15.4 60 60 A N H > S+ 0 0 102 2,-0.2 4,-1.5 1,-0.2 3,-0.4 0.906 112.1 47.9 -64.8 -41.9 4.1 5.9 -14.0 61 61 A A H > S+ 0 0 58 1,-0.3 4,-1.5 2,-0.2 -1,-0.2 0.873 105.8 59.2 -67.3 -37.0 1.4 8.1 -15.6 62 62 A T H > S+ 0 0 0 2,-0.2 4,-2.1 1,-0.2 -1,-0.3 0.807 101.2 57.2 -56.9 -30.4 -1.2 5.7 -14.2 63 63 A L H X S+ 0 0 25 -4,-1.1 4,-3.0 -3,-0.4 5,-0.2 0.951 104.1 49.6 -66.5 -49.5 0.3 6.6 -10.8 64 64 A A H X S+ 0 0 62 -4,-1.5 4,-2.2 1,-0.2 -1,-0.2 0.802 108.7 55.9 -58.3 -29.6 -0.3 10.3 -11.3 65 65 A E H X S+ 0 0 54 -4,-1.5 4,-1.3 2,-0.2 -1,-0.2 0.942 110.6 42.3 -68.2 -47.3 -3.8 9.3 -12.2 66 66 A L H X S+ 0 0 21 -4,-2.1 4,-2.3 2,-0.2 -2,-0.2 0.926 116.9 47.5 -63.7 -47.1 -4.4 7.5 -8.9 67 67 A D H X S+ 0 0 28 -4,-3.0 4,-2.4 1,-0.2 5,-0.2 0.937 110.9 50.3 -61.8 -48.4 -2.7 10.2 -6.9 68 68 A A H < S+ 0 0 28 -4,-2.2 4,-0.3 1,-0.2 -1,-0.2 0.766 116.2 43.5 -63.1 -27.7 -4.6 13.0 -8.5 69 69 A L H < S+ 0 0 140 -4,-1.3 -1,-0.2 -3,-0.2 -2,-0.2 0.813 119.6 40.3 -85.0 -33.1 -7.9 11.2 -7.9 70 70 A R H < S+ 0 0 84 -4,-2.3 -2,-0.2 -5,-0.1 -3,-0.2 0.945 127.7 20.0 -85.7 -52.1 -7.2 10.1 -4.4 71 71 A T S >< S+ 0 0 16 -4,-2.4 3,-2.3 -5,-0.2 2,-0.9 0.063 73.7 148.5-116.3 25.2 -5.5 13.0 -2.6 72 72 A R T 3 S+ 0 0 202 1,-0.3 -4,-0.1 -4,-0.3 -5,-0.0 -0.457 81.8 18.2 -61.6 101.2 -6.4 16.0 -4.7 73 73 A G T 3 S- 0 0 87 -2,-0.9 -1,-0.3 0, 0.0 -2,-0.1 0.052 135.6 -63.5 122.6 -22.7 -6.5 18.6 -2.1 74 74 A G S < S+ 0 0 57 -3,-2.3 -2,-0.1 2,-0.0 3,-0.1 0.735 75.5 143.3 106.8 80.7 -4.6 16.9 0.6 75 75 A E + 0 0 42 1,-0.3 19,-0.6 -4,-0.3 2,-0.2 0.747 67.7 8.3-111.4 -46.8 -6.1 13.7 2.0 76 76 A Y E -E 93 0A 26 17,-0.1 -1,-0.3 18,-0.1 2,-0.3 -0.785 68.7-115.0-131.3 172.8 -3.1 11.4 2.7 77 77 A A E -E 92 0A 35 15,-1.8 15,-2.2 -2,-0.2 2,-0.8 -0.841 28.3-117.3-110.3 151.8 0.7 11.4 2.7 78 78 A R E -E 91 0A 146 -2,-0.3 2,-0.8 13,-0.2 13,-0.2 -0.790 26.8-172.2 -92.5 111.9 2.9 9.4 0.4 79 79 A Q E -E 90 0A 53 11,-3.7 11,-2.8 -2,-0.8 2,-0.7 -0.891 11.9-153.2-104.2 104.0 5.0 6.9 2.3 80 80 A L E -E 89 0A 89 -2,-0.8 2,-0.4 9,-0.2 9,-0.2 -0.693 14.0-168.3 -81.1 115.9 7.5 5.4 -0.1 81 81 A I E -E 88 0A 18 7,-3.1 7,-3.2 -2,-0.7 2,-1.0 -0.897 20.1-130.5-110.1 135.0 8.5 2.0 1.2 82 82 A Q E -E 87 0A 139 -2,-0.4 5,-0.3 5,-0.3 -2,-0.0 -0.708 32.3-179.2 -87.1 101.4 11.4 -0.0 -0.2 83 83 A T E > -E 86 0A 2 3,-1.0 3,-2.3 -2,-1.0 -55,-0.0 -0.648 41.8-112.9 -97.1 159.9 10.1 -3.5 -1.1 84 84 A P T 3 S+ 0 0 104 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 0.658 122.4 52.7 -62.3 -14.7 12.3 -6.4 -2.5 85 85 A Y T 3 S- 0 0 101 1,-0.4 2,-0.1 -59,-0.1 -3,-0.0 0.277 133.3 -69.6-101.8 7.2 10.1 -6.0 -5.6 86 86 A G E < - E 0 83A 11 -3,-2.3 -3,-1.0 2,-0.1 -1,-0.4 -0.299 66.2 -55.9 119.7 154.4 10.9 -2.3 -5.8 87 87 A S E - E 0 82A 45 -5,-0.3 -85,-0.5 -2,-0.1 2,-0.3 -0.493 59.3-166.0 -66.0 126.7 10.0 0.9 -3.8 88 88 A A E - E 0 81A 0 -7,-3.2 -7,-3.1 -2,-0.3 2,-0.5 -0.876 21.2-113.2-120.1 148.1 6.2 1.2 -3.6 89 89 A W E -bE 3 80A 64 -87,-1.9 -85,-1.8 -2,-0.3 2,-0.5 -0.687 28.6-169.5 -83.3 124.1 4.0 4.1 -2.6 90 90 A M E - E 0 79A 0 -11,-2.8 -11,-3.7 -2,-0.5 2,-0.7 -0.962 15.0-141.1-111.9 127.8 2.0 3.6 0.6 91 91 A Y E - E 0 78A 4 -2,-0.5 -47,-0.9 -13,-0.2 2,-0.3 -0.807 20.2-158.6 -93.8 118.2 -0.7 6.1 1.5 92 92 A V E - E 0 77A 22 -15,-2.2 -15,-1.8 -2,-0.7 -47,-0.2 -0.736 29.1 -93.9-100.4 142.3 -0.8 6.9 5.2 93 93 A Y E + E 0 76A 85 -49,-0.4 -17,-0.1 -2,-0.3 -1,-0.1 -0.238 42.2 174.0 -46.9 127.2 -3.6 8.3 7.2 94 94 A Q + 0 0 109 -19,-0.6 -1,-0.1 1,-0.2 -18,-0.1 0.338 58.6 61.7-125.8 2.9 -3.2 12.1 7.3 95 95 A R S S- 0 0 144 1,-0.1 -1,-0.2 -20,-0.0 -20,-0.0 -1.000 104.5 -67.0-135.8 138.2 -6.5 13.1 9.0 96 96 A P - 0 0 109 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 0.310 31.0-154.5 -28.4 129.0 -7.6 12.1 12.6 97 97 A V > + 0 0 39 -4,-0.1 3,-2.0 3,-0.1 2,-0.4 0.168 43.6 146.4 -90.8 16.2 -8.4 8.4 13.1 98 98 A D T 3 S+ 0 0 153 1,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.392 73.9 6.6 -60.3 110.5 -10.8 9.3 15.9 99 99 A G T 3 S+ 0 0 74 -2,-0.4 -1,-0.3 1,-0.3 2,-0.2 0.731 98.8 134.5 89.5 24.0 -13.6 6.8 15.8 100 100 A L < - 0 0 56 -3,-2.0 2,-0.4 1,-0.0 -1,-0.3 -0.546 56.4-110.0 -98.5 168.2 -12.2 4.5 13.2 101 101 A K E -D 37 0A 128 -64,-1.7 -64,-2.5 -2,-0.2 2,-0.5 -0.813 28.5-147.9 -99.2 141.9 -12.0 0.7 13.1 102 102 A L E -D 36 0A 75 -2,-0.4 2,-0.9 -66,-0.2 -66,-0.2 -0.931 12.6-162.4-117.2 125.8 -8.6 -1.0 13.4 103 103 A I E +D 35 0A 39 -68,-3.8 -68,-1.8 -2,-0.5 3,-0.3 -0.823 13.2 175.7-101.5 87.9 -7.5 -4.3 11.9 104 104 A E S S+ 0 0 115 -2,-0.9 -54,-0.3 1,-0.2 -1,-0.2 0.611 75.1 69.3 -67.2 -12.8 -4.5 -5.1 14.0 105 105 A S S S- 0 0 39 2,-0.2 -55,-1.8 -56,-0.2 -1,-0.2 0.954 96.9-138.6 -69.4 -50.4 -4.4 -8.3 12.0 106 106 A G + 0 0 0 1,-0.4 -54,-0.7 -3,-0.3 2,-0.3 0.218 66.8 101.3 109.2 -12.8 -3.3 -6.6 8.8 107 107 A D - 0 0 20 -56,-0.2 -1,-0.4 1,-0.1 -2,-0.2 -0.793 67.6-138.5-106.3 151.4 -5.5 -8.6 6.5 108 108 A W S S+ 0 0 44 -2,-0.3 3,-0.1 -56,-0.2 -1,-0.1 0.793 102.0 25.5 -73.5 -31.7 -8.8 -7.5 5.0 109 109 A L S S+ 0 0 108 1,-0.1 2,-3.5 -3,-0.0 -2,-0.0 0.899 71.2 138.9 -99.3 -74.2 -10.5 -10.8 5.5 110 110 A D > + 0 0 71 1,-0.2 3,-2.6 2,-0.1 -1,-0.1 -0.148 51.0 89.8 66.5 -48.3 -8.8 -12.7 8.4 111 111 A R T 3 + 0 0 232 -2,-3.5 -1,-0.2 1,-0.3 -3,-0.0 0.224 68.1 74.1 -81.0 16.0 -12.0 -14.0 9.9 112 112 A D T 3 0 0 124 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.525 360.0 360.0 -89.6 -12.6 -12.0 -17.2 7.8 113 113 A K < 0 0 225 -3,-2.6 -2,-0.1 -4,-0.0 -3,-0.0 0.694 360.0 360.0 52.0 360.0 -9.1 -18.1 10.3